TCONS_00004022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004022
Unique NameTCONS_00004022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004022 ID=TCONS_00004022|Name=TCONS_00004022|organism=Clytia hemisphaerica|type=transcript|length=1408bp
CAGATatatcccaaattttagtcatttttcaagcaatgttaagaaaaatt
tccttttttgaatttaatattTAAAAGAATAATAGGATGGTACTGGAAGA
AATCTTTCCTAAGCCAACTAGAACAAACTATTGGAGCGAACATGAGAAAT
GGAAATGGACTATCAATCTTTGTATTGGCTCAGTTCTATTATTTTCCACC
AGGAACTCAATGGCCGTATGTGTGCCTGCTATAAGTAAAGAACTTGGATG
GGATAAAGAAATTTCTGGCACTGCTTTGTCATCCTTCTTTGTAGGATACA
TTGGTTCTAACCTAGTTGGTGGTTCTTTTGCAGATCGATTTGGTGGCGCA
AAAACAATTTTGTATTCTTCCCTTGTCTGGTCCTCACTGACTATTGTATT
GCCTATTTTTGCAAATTCACAGGGTATTTTCACATCTAGcaattatgata
tttttgctatTAGATTTTTGACAGGATGCTCTCAAGGTTTTTACTACACT
TCATTTGCTGCCTTGATTTCAAGGTATGTGAGAACTGATGATAAAGGACT
TATTGCTGGTATCGTTTATTCTGGATGTGCTGTTGGTATTATTCTGACCG
GGTTTTTTGGATCACTTTTAATAGAAGCTGGTCATTGGTCTTATGTCTTC
ACAATAAGTGGATTTTCTTCATTGTTATGGCTTATTTGGTTCCAAAACCT
CTCAAGAGAGACAATTCAAAaagaaacaatagaaaatttcaACTCTGGTA
ATGAAGCTGTCGATACCAGGAAATTCATAAAAAGTATACTATGCGAGAGA
TCAATTCTGGCACTTTTAATTGCTTACTTCGGGTCAGGCTGTACATATGG
CGTTTTGAATTCTTGGACCCCTGTATATTTTCATGATATGTTTCCGAACA
GTAAAGGATGGATATTCAATGTTATACCATGGTtgacaagttttattttt
gagcttGTAACTGGATACTTTGCAAATAATCtgctaaaaaatggaaaatc
tgTATTATTTGTACGCAAAACATATGCTGCTTTTCTTTTTCTAGGAACAG
CATTTTTTTCAATACTTTTAACCAAAGTGAAGATATTCGAACAAGCTTTA
CTATTGATGAGCTTAGTAGCTGGATTTTCTGCATTTGGCTCAAGCTCGAT
ATCCATGAATCCTCAAGATGTTTGTCCAAACAAAGCTGGTTCTTTGTTCG
GGCTATCAAACGCTATAGCCTCTTTTGGAGGTACTATTGGTGTTTATCTC
ACTGGACTGGTATTGGAAACCAATAATAACTGGTCATTGATTTTTATTTG
TAATGCAATAATatcaattttatcatttttagtttttcaattATTCGGCT
CCACTAAGCCAATTGATAACTTATAGTACCTTTtggatttttaatttcat
aTAAAGAA
Run BLAST on NCBI

protein sequence of TCONS_00004022-protein

>TCONS_00004022-protein ID=TCONS_00004022-protein|Name=TCONS_00004022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=429bp
MVLEEIFPKPTRTNYWSEHEKWKWTINLCIGSVLLFSTRNSMAVCVPAIS
KELGWDKEISGTALSSFFVGYIGSNLVGGSFADRFGGAKTILYSSLVWSS
LTIVLPIFANSQGIFTSSNYDIFAIRFLTGCSQGFYYTSFAALISRYVRT
DDKGLIAGIVYSGCAVGIILTGFFGSLLIEAGHWSYVFTISGFSSLLWLI
WFQNLSRETIQKETIENFNSGNEAVDTRKFIKSILCERSILALLIAYFGS
GCTYGVLNSWTPVYFHDMFPNSKGWIFNVIPWLTSFIFELVTGYFANNLL
KNGKSVLFVRKTYAAFLFLGTAFFSILLTKVKIFEQALLLMSLVAGFSAF
GSSSISMNPQDVCPNKAGSLFGLSNAIASFGGTIGVYLTGLVLETNNNWS
LIFICNAIISILSFLVFQLFGSTKPIDNL
Run BLAST on NCBI

transcript from alignment at sc0000039:316625..319855+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004022 ID=TCONS_00004022|Name=TCONS_00004022|organism=Clytia hemisphaerica|type=transcript|length=3231bp|location=Sequence derived from alignment at sc0000039:316625..319855+ (Clytia hemisphaerica)
CAGATatatcccaaattttagtcatttttcaagcaatgttaagaaaaatt
tccttttttgaatttaatattTAAAAGAATAATAGGATGGTACTGGAAGA
AATCTTTCCTAAGCCAACTAGAACAAACTATTGGAGCGAACATGAGAAAT
GGAAATGGACTATCAATCTTTGTATTGGCTCAGTTCTATTATTTTCCACC
AGGAACTCAATGGCCGTATGTGTGCCTGCTATAAGTAAAGAACTTGGATG
GGATAAAGAAATTTCTGGCACTGCTTTGTCATCCTTCTTTGTAGGATACA
TTGGTTCTAACCTAGTTGGTGGTTCTTTTGCAGATCGATTTGGTGGCGCA
AAAACAATTTTGTATTCTTCCCTTGTCTGGTCCTCACTGACTATTGTATT
GCCTATTTTTGCAAATTCACAGGGTATTTTCACATCTAGcaattatgata
tttttgctatTAGATTTTTGACAGGATGCTCTCAAGGTTTTTACTACACT
TCATTTGCTGCCTTGATTTCAAGGTATGTGAGAACTGATGATAAAGGACT
TATTGCTGGTATCGTTTATTCTGGATGTGCTGTTGGTATTATTCTGACCG
GGTTTTTTGGATCACTTTTAATAGAAGCTGGTCATTGGTCTTATGTCTTC
ACAATAAGTGGATTTTCTTCATTGTTATGGCTTATTTGGTTCCAAAACCT
CTCAAGAGAGACAATTCAAAaagaaacaatagaaaatttcaACTCTGGTA
ATGAAGCTGTCGATACCAGGAAATTCATAAAAAGTATACTATGCGAGAGA
TCAATTCTGGCACTTTTAATTGCTTACTTCGGGTCAGGCTGTACATATGG
CGTTTTGAATTCTTGGACCCCTGTATATTTTCATGATATGTTTCCGAACA
GTAAAGGATGGATATTCAATGTTATACCATGGTtgacaagttttattttt
gagcttGTAACTGGATACTTTGCAAATAATCtgctaaaaaatggaaaatc
tgTATTATTTGTACGCAAAACATATGCTGCTTTTCTTTTTCTAGGAACAG
CATTTTTTTCAATACTTTTAACCAAAGTGAAGATATTCGAACATGCTTTA
CTTTTGATGAGCTTAGTCGCTGGATTTTCTGCTTTTGGCTCAAGCTCATT
ATGTCTGAATCCTCAAGATGTTTGTCCAAACAAAGCTGGTTCTTTATATG
GATTAACACATGCTGTAGGATCTTTTGGAGGTACTATTGGTGTTTATTTT
ACTGGACTGGTATTGGAAACCAATAATAACTGGTCATTGATTTTTGTTTG
TAATGCaataatatcaattttttcttttttagtttttcaattATTCGGCT
CCACTAAGcctattgaaaatttttgaagataatgaaaatgaaaatctcac
AATCCTGATTCTTATTTCATTCAACCTAATGCTTTGAATTGAGTAAATAG
CAAAAAAatgtcaaggattttgcagatAACCCTTTAAATTTGTCTTCAAT
AATAATTCTTATGTTTCTACTGTACTTCACGAGATTGTTTGAGCCAGTgg
gatttctttatttttgtttgcttgtgaTTTACAGTTTTACTTTATTTTAA
GAATAGATTTAGATAGACttaatgaaatatttaaaatctaatttcaatAC
CATATAATAAACTTCCTTTCGGTGCCGCAAAGTTAATTTAGactattttg
gtgaaaagaaTACATTGTGGTTTTCCTGTAAAGTTTCCATCAAAAGATAC
GATTTATGAAGGGGCATAACTCATATATGTTAAATTTATAAATCAACTTG
CTTTTTGTTTTGCGCTTACAAATTAAGGATGAAAACGATTTTGTATGACT
TTCTTGtttaaattttgtattttttataaccACCACTtcgatttttaaag
gttggAAGAATGACAACAGTTGAGATATTTCCTAAACAAACCAAAGGAGA
TTATTGGAATGAAACAAACAAATGGAAATGGACCATCAATCTTTGTGTTG
GCTCAGTTCTATTATTTTCTACTAGAAACTCAATGGCTGTATGTGTACCT
GCTATTAGTAAAGAACTTGCATGGAATAAAGAAATTTCTGGAATGGCTCT
TTCGTCTTTCTTTTTTGGATATGTTGGTTCTAATATTGTCGGTGGTTATT
TTGCAGATCGATTTGGTGGAGCAAAGACAATTTTGTACTCTTCTCTTATA
TGGTCTTCACTGACTTTCATTTTGCCTCATTTTGCAAATTCGCAGGGTAT
TTTCATATCTggtaattttgacatttttgcgATAAGATTTTTAACAGGAT
GTTCTCAAGGTTTTTTCTACCCTTCCTTTGTAGCCTTGATTTCAAGGTAC
GTGAGAACTGATGATAAAGGATTTGTTGTTGGCATTGTTTATTCTGGATG
TGCTATTGGTATTATTCTGACCGGTTTTTTTGGATCACTTTTAATAGAAG
CTGGCCATTGGTCCTATGTTTTTATGATAAGTGGATTTTCTTCATTGCTA
TGGCTTATTTGGTTTCGAAACCTTTCTCGCGAGACGATTCAACAAGAAAC
AGTAGAAAATTTCAACTCTGGAAGTAAATCCACGGATACCACGAAATTCA
TAAAAAGTTTACTCTGCCAGCCATCAATTTGGGCACTTTTAATTGCCTAC
TTTGGATCTGGCTGCACTTATGCTGTATTGAATTCTTGGACCCCTGTATA
TTTTCATGATGTGTTTCCAAACAGTAAAGGATGGGTATTCAATGTCATAC
CATGGTTGACCAGTTTTATCTTTGAGCTTGTAACTGGTTATTATGCAAAT
GGTTTATTGAAAAGTGGAAAATCTGTATTATTTGTTCGAAAAACTTATGC
TGCTATTCTTTTCATTGGAACAGCACTGTTTTCTGTGCTTTTAaccaaag
taaaaattttcgaaCAAGCTTTACTATTGATGAGCTTAGTAGCTGGATTT
TCTGCATTTGGCTCAAGCTCGATATCCATGAATCCTCAAGATGTTTGTCC
AAACAAAGCTGGTTCTTTGTTCGGGCTATCAAACGCTATAGCCTCTTTTG
GAGGTACTATTGGTGTTTATCTCACTGGACTGGTATTGGAAACCAATAAT
AACTGGTCATTGATTTTTATTTGTAATGCAATAATatcaattttatcatt
tttagtttttcaattATTCGGCTCCACTAAGCCAATTGATAACTTATAGT
ACCTTTtggatttttaatttcataTAAAGAA

Coding sequence (CDS) from alignment at sc0000039:316625..319855+

>TCONS_00004022 ID=TCONS_00004022|Name=TCONS_00004022|organism=Clytia hemisphaerica|type=CDS|length=2580bp|location=Sequence derived from alignment at sc0000039:316625..319855+ (Clytia hemisphaerica)
ATGGTACTGGAAGAAATCTTTCCTAAGCCAACTAGAACAAACTATTGGAG
CGAACATGAGAAATGGAAATGGACTATCAATCTTTGTATTGGCTCAGTTC
TATTATTTTCCACCAGGAACTCAATGGCCGTATGTGTGCCTGCTATAAGT
AAAGAACTTGGATGGGATAAAGAAATTTCTGGCACTGCTTTGTCATCCTT
CTTTGTAGGATACATTGGTTCTAACCTAGTTGGTGGTTCTTTTGCAGATC
GATTTGGTGGCGCAAAAACAATTTTGTATTCTTCCCTTGTCTGGTCCTCA
CTGACTATTGTATTGCCTATTTTTGCAAATTCACAGGGTATTTTCACATC
TAGcaattatgatatttttgctatTAGATTTTTGACAGGATGCTCTCAAG
GTTTTTACTACACTTCATTTGCTGCCTTGATTTCAAGGTATGTGAGAACT
GATGATAAAGGACTTATTGCTGGTATCGTTTATTCTGGATGTGCTGTTGG
TATTATTCTGACCGGGTTTTTTGGATCACTTTTAATAGAAGCTGGTCATT
GGTCTTATGTCTTCACAATAAGTGGATTTTCTTCATTGTTATGGCTTATT
TGGTTCCAAAACCTCTCAAGAGAGACAATTCAAAaagaaacaatagaaaa
tttcaACTCTGGTAATGAAGCTGTCGATACCAGGAAATTCATAAAAAGTA
TACTATGCGAGAGATCAATTCTGGCACTTTTAATTGCTTACTTCGGGTCA
GGCTGTACATATGGCGTTTTGAATTCTTGGACCCCTGTATATTTTCATGA
TATGTTTCCGAACAGTAAAGGATGGATATTCAATGTTATACCATGGTtga
caagttttatttttgagcttGTAACTGGATACTTTGCAAATAATCtgcta
aaaaatggaaaatctgTATTATTTGTACGCAAAACATATGCTGCTTTTCT
TTTTCTAGGAACAGCATTTTTTTCAATACTTTTAACCAAAGTGAAGATAT
TCGAACAAGCTTTACTATTGATGAGCTTAGTAGCTGGATTTTCTGCATTT
GGCTCAAGCTCGATATCCATGAATCCTCAAGATGTTTGTCCAAACAAAGC
TGGTTCTTTGTTCGGGCTATCAAACGCTATAGCCTCTTTTGGAGGTACTA
TTGGTGTTTATCTCACTGGACTGGTATTGGAAACCAATAATAACTGGTCA
TTGATTTTTATTTGTAATGCAATAATatcaattttatcatttttagtttt
tcaattATTCGGCTCCACTAAGCCAATTGATAACTTATAGATGGTACTGG
AAGAAATCTTTCCTAAGCCAACTAGAACAAACTATTGGAGCGAACATGAG
AAATGGAAATGGACTATCAATCTTTGTATTGGCTCAGTTCTATTATTTTC
CACCAGGAACTCAATGGCCGTATGTGTGCCTGCTATAAGTAAAGAACTTG
GATGGGATAAAGAAATTTCTGGCACTGCTTTGTCATCCTTCTTTGTAGGA
TACATTGGTTCTAACCTAGTTGGTGGTTCTTTTGCAGATCGATTTGGTGG
CGCAAAAACAATTTTGTATTCTTCCCTTGTCTGGTCCTCACTGACTATTG
TATTGCCTATTTTTGCAAATTCACAGGGTATTTTCACATCTAGcaattat
gatatttttgctatTAGATTTTTGACAGGATGCTCTCAAGGTTTTTACTA
CACTTCATTTGCTGCCTTGATTTCAAGGTATGTGAGAACTGATGATAAAG
GACTTATTGCTGGTATCGTTTATTCTGGATGTGCTGTTGGTATTATTCTG
ACCGGGTTTTTTGGATCACTTTTAATAGAAGCTGGTCATTGGTCTTATGT
CTTCACAATAAGTGGATTTTCTTCATTGTTATGGCTTATTTGGTTCCAAA
ACCTCTCAAGAGAGACAATTCAAAaagaaacaatagaaaatttcaACTCT
GGTAATGAAGCTGTCGATACCAGGAAATTCATAAAAAGTATACTATGCGA
GAGATCAATTCTGGCACTTTTAATTGCTTACTTCGGGTCAGGCTGTACAT
ATGGCGTTTTGAATTCTTGGACCCCTGTATATTTTCATGATATGTTTCCG
AACAGTAAAGGATGGATATTCAATGTTATACCATGGTtgacaagttttat
ttttgagcttGTAACTGGATACTTTGCAAATAATCtgctaaaaaatggaa
aatctgTATTATTTGTACGCAAAACATATGCTGCTTTTCTTTTTCTAGGA
ACAGCATTTTTTTCAATACTTTTAACCAAAGTGAAGATATTCGAACAAGC
TTTACTATTGATGAGCTTAGTAGCTGGATTTTCTGCATTTGGCTCAAGCT
CGATATCCATGAATCCTCAAGATGTTTGTCCAAACAAAGCTGGTTCTTTG
TTCGGGCTATCAAACGCTATAGCCTCTTTTGGAGGTACTATTGGTGTTTA
TCTCACTGGACTGGTATTGGAAACCAATAATAACTGGTCATTGATTTTTA
TTTGTAATGCAATAATatcaattttatcatttttagtttttcaattATTC
GGCTCCACTAAGCCAATTGATAACTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002260XLOC_002260Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004022-proteinTCONS_00004022-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004022-exon-sc0000039-1491911889:316625..317716TCONS_00004022-exon-sc0000039-1491911889:316625..317716Clytia hemisphaericaexon
TCONS_00004022-exon-sc0000039-1510915933:316625..317716TCONS_00004022-exon-sc0000039-1510915933:316625..317716Clytia hemisphaericaexon
TCONS_00004022-exon-sc0000039-1575043694:316625..317716TCONS_00004022-exon-sc0000039-1575043694:316625..317716Clytia hemisphaericaexon
TCONS_00004022-exon-sc0000039-1491911889:319540..319855TCONS_00004022-exon-sc0000039-1491911889:319540..319855Clytia hemisphaericaexon
TCONS_00004022-exon-sc0000039-1510915933:319540..319855TCONS_00004022-exon-sc0000039-1510915933:319540..319855Clytia hemisphaericaexon
TCONS_00004022-exon-sc0000039-1575043694:319540..319855TCONS_00004022-exon-sc0000039-1575043694:319540..319855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:316625..319855 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.67735	4.38278	1.96625	1.84126	3.02849	2.25683	2.9632	4.9017	3.31503	2.17385	2.35113	2.0818	1.91732	3.89278	3.38625	3.18889	3.34459	4.39319	1.55161	3.35408	3.07728	4.01494	7.18056	5.27906	4.13863	2.35004	2.11044	2.51464	3.50705	4.56785
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00004022 vs. Swiss-Prot (Human)
Match: S17A9 (Solute carrier family 17 member 9 OS=Homo sapiens GN=SLC17A9 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.561e-67
Identity = 146/438 (33.33%), Postives = 231/438 (52.74%), Query Frame = 3 
Query:  108 PKPTRTN-----YWSEHEKWKWTINLCIGSVLLFSTRNSMAVCVPAISKELGWDKEISGTALSSFFVGYIGSNLVGGSFADRFGGAKTILYSSLVWSSLTIVLPIFANSQGIFTSSNYDIFAI--RFLTGCSQGFYYTSFAALISRYVRTDDKGLIAGIVYSGCAVGIILTGFFGSLLIEAGHWSYVFTISGFSSLLWLIWFQN---LSRETI--------QKETIENFNSGNEAVDTRKFIKSILCERSILALLIAYFGSGCTYGVLNSWTPVYFHDMFPNSKGWIFNVIPWLTSFIFELVTGYFANNLLKNGKSVLFVRKTYAAFLFLGTAFFSILLTKVKIFEQALLLMSLVXXXXXXXXXXISMNPQDVCPNKAGSLFGLSNAIASFGGTIGVYLTGLVLETNNNWSLIFICNAIISILSFLVFQLFGSTKPID 1367
            P   R +      WS  E   WT  L +G+ LL+  R+SM +C  ++S++ GW+K+ +G  LSSFF GY  + +VGG   DR GG K IL S+  W S+T V P+ A+      SS +  F    R L G  QG Y+ +  +L+S+ VR  ++     IV +G   G +LTG  GSLL+E   W  +F  SG  +LLW +W+     LS + +        Q   +   N     V  R+  +    + ++ A +++   + C++ +L SW P +F + FP++KGWIFNV+PWL +    L +G+ +++L+  G   + VRK         ++ F++ L     F ++++  S   G   F  S IS+N QD+ P+ AG LFG++N   +  G +GV L G ++ET  +W+ +F   AIIS L    F +FG  + +D
Sbjct:    5 PDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGSITAVTPLLAH-----LSSAHLAFMTFSRILMGLLQGVYFPALTSLLSQKVRESERAFTYSIVGAGSQFGTLLTGAVGSLLLEWYGWQSIFYFSGGLTLLW-VWYVYRYLLSEKDLILALGVLAQSRPVSRHNR----VPWRRLFR----KPAVWAAVVSQLSAACSFFILLSWLPTFFEETFPDAKGWIFNVVPWLVAIPASLFSGFLSDHLINQGYRAITVRKLMQGMGLGLSSVFALCLGHTSSFCESVVFASASIGLQTFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLGGYLMETTGSWTCLFNLVAIISNLGLCTFLVFGQAQRVD 428
The following BLAST results are available for this feature:
BLAST of TCONS_00004022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S17A92.561e-6733.33Solute carrier family 17 member 9 OS=Homo sapiens ... [more]
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