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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96898_cuf1 >transcript:BL96898_cuf1-protein ID=transcript:BL96898_cuf1-protein|Name=transcript:BL96898_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=135bp
YMYKELLLNGFHLTVPCGPGTYHDTLDGFCRACEYASYQDESGQTKCKPC
PDETTTEGAGSKNISDCKVFDDCNCGSNPCILSATGYFCYCLRGYKLANG
TCVDIDECEDPNICPNARCINRPGSYSCQCLPGYD Run BLAST on NCBI mRNA from alignment at Sc0000143:607794..611347- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96898_cuf1 ID=transcript:BL96898_cuf1|Name=transcript:BL96898_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3554bp|location=Sequence derived from alignment at Sc0000143:607794..611347- (Branchiostoma lanceolatum)
TCTACATGTACAAAGAATTATTGCTAAATGGTTTCCATTTGACAGTTCCC
TGTGGCCCGGGGACGTATCATGACACCCTTGACGGTTTCTGCCGGGCGTG
CGAGTACGCCTCTTACCAAGACGAATCTGGACAAACCAAGTGTAAGCCTT
GCCCAGACGAAACAACAACTGAAGGGGCAGGGTCAAAGAATATTAGCGAT
TGCAAAGGTTCGTAAATATCATTGACACTTTTGGACGTACTCATGAACCT
ATATTTCGTTGTCATTGACATAAAGGAAAAAAAGTCTCATCTCCCAATAG
CTTGAATGTCTCAAATTCTTTTTCCCCGTTTAATTCTAACTTGTGTTTCT
CTCCCGTATGTACGTCTAAAACTTGAATGAGCGGTCGGTCTCAATTTGCG
ACTCTCACTTTTTCGTTGACTTTGCGCTTAATGTACTCGACAAATTATTT
TAATTTTACATGCACGTCAATGCTCTCAAACGTAGCCCTTGTCAAATACC
GTAGGCTTGAAGAAATGTTGGAACCAGCTTGTGGTCATTTTTTATAAACT
TTTAGAAGGATTATAATGTTCAGATAAACATTCCTTGGATGAGAGTAACA
ATATTTCTCATATGTCTCACCGTTACCAAAGTTAGGATAATGCATAGTAT
GATTTGTCTTCTTTGCAGTATTCGACGACTGCAACTGTGGTAGCAACCCG
TGTATCTTAAGCGCGACTGGCTATTTCTGTTATTGTCTTCGTGGGTATAA
GCTGGCTAATGGGACATGTGTTGGTAGGTATTGTGATTACGTTCATGTTG
ATACCACACCGTTGTAGCGAGTTAAGATTAATCAATGTAATCAATGTGTT
CACTTCTTGCTCATCTGATACCATCGATCCCTGTCTTTGCTTAGACTCCG
TCTGGGAAAGATGGCTAAATTCAGTCAAAGCAGCTGCGGACAAATTCATA
CCCAAAAAAGTCATCAAGGACATGACCGCACCACCGTGGATTGATTCGGA
AGTAAGGCATTTAAAAAAATGCAAACGCACTGCCTGGGCTAAAGCCAAAC
GAACAGACAAACCAAATCACTGGGCCAAGTTCAGACGTCTCCGCAACAAA
TTGAAGAAAATGTTAAATGCTAAATATGCAAATCATTTGATTAATCTGGG
AGACATCGCACTGAGTAACCCTAAAAGATTTTGGTCCTTCTTCCACTCTA
AGACAAAGTCTAAAAATCTACCAGACAGAATGAAACTTCAGGATGAGTCT
GCTGAGTCTGCTCAGGAGAAGGCAGAATTGTTCAATAACTTCTTTTACTC
TTTTTTTAACTGTACCGATGGGGAAACCCCGTTGCCCGACTTGATTGATA
CTTCTAGTGTGCCAAAAATCTCTTCAGTTACATTTTCTGTTAGCACCATT
GAATCTATTCTCAAAAACCTGGAAGTTACAAAGGCCACAGGGCCGGACGA
TCTCCCAGCGATGGTATTAAACAAGTGTGCAGCCCAATTAGCACCATCTT
TGGAAAAACTGTTTCAATTATGTGTGAGCAATGCAAAAATTCCGAGTATG
TGGAAAAAAGCTAATATTACTCCTGTTTTTAAGAAGGGTGATAAGAGTGC
CGTATCTAATTACAGACCTGTGTCGTTATTATGTATTACAAGCAAAGTTT
TCGAAAGATGTATTTTCAACTCTCTTTATCCATTATTGTCGAACACTCTT
TATCCCCTTCAACATGGTTTCGTCAAGGGTAAATCCACTACCACCCAACT
TTTAGAAGTTTACGAGGAAATTGGTGAAGTACTGGATAAATCTGGGCAAG
TTGACGTAATATTCTTGGATTTTTGCAAAGCATTTGATAGTGTCTCTCAT
AAACTCCTAGTACACAAATTGAAATCTTTTGGGTTCTCCAGACAACTACT
TGCTTTATTTAACGACTATCTTTCAGAACGTTTTCAAAGAACTGTCATAG
AAGGCGAAATGTCTGATTACTTACCTGTGTTGTCAGGTGTCCCCCAGGGA
TCCATATTAGGGCCATTCTTGTTTCTATTATTCGTTAATGATTTACCTGA
CTGTGTTGAATTTGGTAAAATGGCCATGTTTGCAGATGACGCTAAATGTT
TTAGAAGAATTACTTCGATTTTTGATTGTTTTAAATTTCAGTCCGACTTA
GATCGTCTTGTGGCCTGGGGGAAAACCTGGGAGATGGTATTTCATCCATC
TAAGTGTTCAGTTGTTAGTATGACACGTAAAACTTCACCTGTTGAATACC
CTTATAGCATGTCAGATTCTGTACTCAGTCGACAAGATAGTTATAATGAC
TTAGGAGTTCATGTACAACATAACTTATCCTGGAATTCTCATGTACTTAA
GAAGATATCAACATGTAACTCAAGACTTGCAATGATCAAGAGATCAGTAG
GCTTTAATGCCCCATTTACTGTTAAACTCAATTTGTATCGATCACTGGTG
ATACCACATTTAGACTACTGTTCTCAGGTATGGGCACCGCATACAAGATT
GTATCAGCGCAAAGTAGAAGGTGTTCAAAGACGTGCTACCAAGTACATCT
GTAATGATTACGAACTTAACTATAAGGACAGATTAACCCATACCAACCTT
CTACCATTGTGTTACAGACGAGAACTTTTTGATATCTTATTTCTTTTCAA
ATGTTTCCGCAACGTGTACTGTACCAACATTTCTCATGTCCTCAATGTAT
CCAGACCTACTAGATCACTTCGCTCTACAGACCAATTCCAACTTGTACCA
CGGCCATGTAAAACTGAATCATTCTCATTCTCTTACTTTAGTCGTATTGC
CGTCATCTGGAACAATTTACCACTAGACATTCGCCAACATATGTACTCAA
ACCTCACTCTACAGTCCGTTAAAAAACTCTTGATTTCATATTATAGATCC
CGATTAAGTGACACATTTTCTGTTGATAACTTATGTACTTGGACGACCAC
TTGTCGTTGCTCATCTTGCATAGTGACATAGCTTAACCGTTTACCCTGTT
TTCCTTATCATTTGACCTTATTACTCTCATTTTTTTAATGTACTTCTTTC
AGTATTTGATGTCTTTCATTTATTGTTTTTATCTCAACTTTGTAAATTTT
CTGGGGGAGTCGGCCTCGTAGAGGAACTAGATTCCTGTTGCCGGCTCCCC
TCAGATTGTACGCAATCTGTGAATTTGAATAAATAAAAATATTCCAATAC
ATTGTTTCTTTTAATGAATAATCAGCGTCCTTCTAAGCTATTCTTCTCAG
GAATCTTAGCTTAGTTTGATGCATGATTAAACGATTCTGGTGTCGTCAAA
AATACAAAAACAACTACACTACCTTTTTGATTTGGCTGAACATTGTAGGT
AGCTAGAAAAGTTCATTAGATATATATCATACATTTGGTCATTCACCTAG
ACACAGGTGATTAGACCCAATTACTAAATTCAAAGTCTTTTTTTTACAAC
ATACATAGACATAGATGAGTGCGAAGATCCAAACATCTGCCCCAACGCCA
GGTGCATCAACCGTCCTGGAAGCTACTCCTGTCAGTGTCTGCCGGGATAT
GATG Coding sequence (CDS) from alignment at Sc0000143:607794..611347- >transcript:BL96898_cuf1 ID=transcript:BL96898_cuf1|Name=transcript:BL96898_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1215bp|location=Sequence derived from alignment at Sc0000143:607794..611347- (Branchiostoma lanceolatum)
TACATGTACAAAGAATTATTGCTAAATGGTTTCCATTTGACAGTTCCCTG
TGGCCCGGGGACGTATCATGACACCCTTGACGGTTTCTGCCGGGCGTGCG
AGTACGCCTCTTACCAAGACGAATCTGGACAAACCAAGTGTAAGCCTTGC
CCAGACGAAACAACAACTGAAGGGGCAGGGTCAAAGAATATTAGCGATTG
CAAAGTATTCGACGACTGCAACTGTGGTAGCAACCCGTGTATCTTAAGCG
CGACTGGCTATTTCTGTTATTGTCTTCGTGGGTATAAGCTGGCTAATGGG
ACATGTGTTGACATAGATGAGTGCGAAGATCCAAACATCTGCCCCAACGC
CAGGTGCATCAACCGTCCTGGAAGCTACTCCTGTCAGTGTCTGCCGGGAT
ATGATTACATGTACAAAGAATTATTGCTAAATGGTTTCCATTTGACAGTT
CCCTGTGGCCCGGGGACGTATCATGACACCCTTGACGGTTTCTGCCGGGC
GTGCGAGTACGCCTCTTACCAAGACGAATCTGGACAAACCAAGTGTAAGC
CTTGCCCAGACGAAACAACAACTGAAGGGGCAGGGTCAAAGAATATTAGC
GATTGCAAAGTATTCGACGACTGCAACTGTGGTAGCAACCCGTGTATCTT
AAGCGCGACTGGCTATTTCTGTTATTGTCTTCGTGGGTATAAGCTGGCTA
ATGGGACATGTGTTGACATAGATGAGTGCGAAGATCCAAACATCTGCCCC
AACGCCAGGTGCATCAACCGTCCTGGAAGCTACTCCTGTCAGTGTCTGCC
GGGATATGATTACATGTACAAAGAATTATTGCTAAATGGTTTCCATTTGA
CAGTTCCCTGTGGCCCGGGGACGTATCATGACACCCTTGACGGTTTCTGC
CGGGCGTGCGAGTACGCCTCTTACCAAGACGAATCTGGACAAACCAAGTG
TAAGCCTTGCCCAGACGAAACAACAACTGAAGGGGCAGGGTCAAAGAATA
TTAGCGATTGCAAAGTATTCGACGACTGCAACTGTGGTAGCAACCCGTGT
ATCTTAAGCGCGACTGGCTATTTCTGTTATTGTCTTCGTGGGTATAAGCT
GGCTAATGGGACATGTGTTGACATAGATGAGTGCGAAGATCCAAACATCT
GCCCCAACGCCAGGTGCATCAACCGTCCTGGAAGCTACTCCTGTCAGTGT
CTGCCGGGATATGAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000143 | genome | Sc0000143:607794..611347 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96898_cuf1 |
| Biotype | protein_coding |
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