TCONS_00004157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004157
Unique NameTCONS_00004157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004157 ID=TCONS_00004157|Name=TCONS_00004157|organism=Clytia hemisphaerica|type=transcript|length=503bp
AAGTTTGGTTGTCAGTTTGTGTTTGACAGTTTGGTTTTGGTTTGTATTAT
GTTTTATTGCCTTTTAAATATCTGTACAGAATATAATTATCTCATTAGTG
TTAATGTTTATCTGAAACGATTCGCTTCAACGAGAAAATATTATTGATCC
TGAAAGTTTATAATACACAACGTGTGCTAATACGTAATAGCTAGTTTACT
GCGTCTTCTACCATTtgctttttttgttgttttttgtaagAGTCTCTCAT
GTTTGCTATGGTATAACTGTCTTGTATCTACAGTATGAATTGATTCAGGT
TCATGTGACATAGAATAGATAATACTGTTCAGTACTCAggttgttggttt
ttgtttgttttagattGTTTTTGTGTACACATTGGTTGTTGACATCAGCC
AAATGAAAAAAAGGGAGCGTGGATATCCATAAACTGGAAATACTGATGAT
TGGAATGAATGGGTTTCATAAAAAGGGTAACTTTCATGGTGGCATCCAAA
TAG
Run BLAST on NCBI

transcript from alignment at sc0000039:26962..27464

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004157 ID=TCONS_00004157|Name=TCONS_00004157|organism=Clytia hemisphaerica|type=transcript|length=503bp|location=Sequence derived from alignment at sc0000039:26962..27464 (Clytia hemisphaerica)
CTATTTGGATGCCACCATGAAAGTTACCCTTTTTATGAAACCCATTCATT
CCAATCATCAGTATTTCCAGTTTATGGATATCCACGCTCCCTTTTTTTCA
TTTGGCTGATGTCAACAACCAATGTGTACACAAAAACaatctaaaacaaa
caaaaaccaacaaccTGAGTACTGAACAGTATTATCTATTCTATGTCACA
TGAACCTGAATCAATTCATACTGTAGATACAAGACAGTTATACCATAGCA
AACATGAGAGACTcttacaaaaaacaacaaaaaaagcaAATGGTAGAAGA
CGCAGTAAACTAGCTATTACGTATTAGCACACGTTGTGTATTATAAACTT
TCAGGATCAATAATATTTTCTCGTTGAAGCGAATCGTTTCAGATAAACAT
TAACACTAATGAGATAATTATATTCTGTACAGATATTTAAAAGGCAATAA
AACATAATACAAACCAAAACCAAACTGTCAAACACAAACTGACAACCAAA
CTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002307XLOC_002307Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004157-exon-sc0000039-1491911889:26962..27464TCONS_00004157-exon-sc0000039-1491911889:26962..27464Clytia hemisphaericaexon
TCONS_00004157-exon-sc0000039-1510915933:26962..27464TCONS_00004157-exon-sc0000039-1510915933:26962..27464Clytia hemisphaericaexon
TCONS_00004157-exon-sc0000039-1575043694:26962..27464TCONS_00004157-exon-sc0000039-1575043694:26962..27464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000039supercontigsc0000039:26962..27464 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.353024	1.09305	0.534691	0	0	0	0	0	0	0	0	0.160511	0	0.0685219	0	0.0905885	0	0	0	0.350019	0.170727	0.138361	0.12579	0	0	0.496398	0	0.401812	0.545843
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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