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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96969_cuf1 >transcript:BL96969_cuf1-protein ID=transcript:BL96969_cuf1-protein|Name=transcript:BL96969_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=282bp
DSESHTCQKCRRQFRQAHHFKKHVKTCTSAKTKTRRTYGSFTCKTCEKVF SRSDWLRRHQEVHSKERPFRCKLCSASYKRRDALQRHELIQHTWPDEQVK KAAASEARCVKCGKVYMAGEIPRHMAMSHSYNPDSENISDSENMSHSTPS EQPHADAELSHSAQLGQQTTDPDSENISHFTRSEQLQSGLDVAKFSNFAP SGQSQADLGPTFENKLSTTNSDMVEGEAHKIYPALGIGQRITESEQKQVL VNTDSGNNHCELIDETKGKQLAPAQQDTDSQS Run BLAST on NCBI mRNA from alignment at Sc0000044:519602..522224+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96969_cuf1 ID=transcript:BL96969_cuf1|Name=transcript:BL96969_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2623bp|location=Sequence derived from alignment at Sc0000044:519602..522224+ (Branchiostoma lanceolatum) GACTCCGAGTCCCACACCTGCCAGAAGTGCAGAAGACAGTTCAGACAGGC
CCACCACTTTAAGAAGCACGTCAAGACGTGCACCTCTGCCAAGACGAAGA
CGCGGCGCACCTACGGCTCCTTCACCTGTAAGACGTGTGAGAAAGTCTTC
AGCCGCTCTGATTGGCTAAGACGTCACCAGGAGGTTCATAGCAAGGAGCG
CCCGTTTAGGTTGGTCAAATTAAACACAACCTGTAGAATAGGCGTCATGA
TCATGATGGTTGATGTTACATAAACGTAAGACTGTTATTGTTAGGGAAGT
TATAATCGGTGATGATTGTATTACTAGTATCACCGGTACCTGGGACCCAC
CCTCCCCCCCACCCAAAGGACAATAACTGTTCCTATGGTGTTGTCTTACC
ATAGGAACCTTCCCATCTTGTTTTACATTTCAATTCCTCTTATGCATGAC
TGTGTGATTTGCCATGTAAAACCGTTTTTTCTAGTTATTGTAAATAAGTA
CTGGTTAGTTCTGCTAGTTCATATTAGTGACGCTGAAGATCTAGAAGAGT
GATGGATGTCACTCGAAACTTCCGGAAATAAATCTCCGAATTCTTATCCA
GTTGTAGAATCTGAATTCTCTTTATTAACATACGTACTACAAAAAACACA
ATGTAGTATTAGCGTTTGTATTGTTGAAGCAGAGTGTTTCCGTGTGTCGT
TTACAAAACTATGGCAACTTCATTGCAAATATAATGATAATCAACAGTAA
ATTATCTCGTATTTCATCCCTCTATAATACATGTACAGCTGTCAGGAGGC
ATGTAAGCCTTGTTGTTGTTGATATGAACCAATAAACTAGTCTACTACTG
ACTACAGATGTAAGCTGTGTTCGGCGTCGTACAAGCGCCGAGACGCGCTA
CAGCGGCACGAGCTGATCCAACACACCTGGCCCGACGAACAGGTAACTCC
ACACCTTTGTTTCTTTGTTTATCACAGGTGTTTTTTTTTTAGTCAGAATT
GCCCTGATGAAAGTGACAGGCGGTCATCGAAATGTCACAGTGCATAAAGC
AGCTGGTTGTGTACGAAATTTGTTGTTGTTGTTATTCATCACACAGGTCT
GCCTGCTCATCTTTGTCTGGTGTTGTGTTGGCCGGGTAACGGTTAGGGTG
TTTGGTCTGGAGCCCAAAGGTCCTGGGTTCAAATCCCTGAAGCCTATAAA
TAGGCCGCCGATGTTGTGTTCTCCGGAAAGGCTCTTATTTGAATTATTAT
TTATGATTGTGTTAATACATAAAGTTTATGTGAAGTTTATTTTGTCGTAA
CAATTTACCCGTGACTCCTGCCCCTCCACTTCAACCTTGTTGAAAAGTGG
CCCGTGTGGCTGAACAAGCATTCGAAAGGATATAAAGGCTTTGACTTGAC
TTGACTTGACACGACTTTACTCACAACACGGTACCTGACGTTGGTTGGGG
TCAGGTAAAGGCTTCGCCTTCCAACTGCAATCATCATCATCAGATATTGG
AGCTTTCTTTTAACACAACCAGTAACTTTCACCTGCTGACGTTTCAGTGT
CTATCAGACACCTTCCTCAGAGCTTCTGACTTAAGTGCTTCTTCTCACCG
CTATAAGTAGCTGATGTAGGGCGAGTTTGTTTGGCAAGAATGCAATCCCG
AACGTGGCTAATCATCATCATCAGTCCACTGGCTGCCAATTGCAATACTG
TGCCCTATGTATATCATGTATGAATAGACACAGTGAATAACAACCCACCT
ACTGCCTCAATAAGGCCATCAATCAATAAATCAATCAATCAAAATTGTTT
ATTTATTATAAAAAGGCATTGCAGCCAAAGGCTGAATTGTGCCCTCTGTA
CATATTGCACTTTGTTTTCACCATCAAGACATTACACAAATCATTTAAAA
TTATTTACAGTGGTATTAGAACAGTTTCAATGCATTGGCATTAAGTTCGT
CTATCTGATATCCATTTGCTTATCATATAGACAGTTCAATCCGTTTCATT
TTGTAGCATTCAGGAGCGGTAACAAAGATAGGCCATGGGACTGCCTTTAC
CTTAACCATCTTGTGTTGCAGGTGAAGAAAGCAGCAGCTAGCGAGGCCAG
GTGTGTGAAGTGCGGGAAGGTGTACATGGCAGGGGAGATCCCACGTCACA
TGGCCATGTCGCACTCTTACAACCCGGACTCGGAAAACATTTCGGACTCT
GAAAATATGTCGCACTCCACACCATCAGAGCAGCCACACGCTGACGCAGA
ATTGTCACACTCTGCACAATTGGGACAACAAACAACTGACCCGGACTCTG
AAAATATTTCTCACTTCACACGATCAGAACAACTACAGAGCGGCCTAGAC
GTTGCAAAATTTTCAAACTTTGCACCATCAGGACAGTCACAAGCAGATCT
AGGGCCTACCTTTGAAAACAAGCTCAGCACGACAAACTCAGATATGGTGG
AGGGTGAAGCGCACAAGATATATCCAGCTTTAGGGATTGGACAACGCATC
ACGGAGTCGGAACAAAAACAGGTACTAGTAAATACCGACTCAGGAAACAA
TCATTGTGAGCTGATAGATGAAACAAAAGGCAAGCAACTAGCCCCTGCGC
AGCAAGACACAGACTCACAAAGC Coding sequence (CDS) from alignment at Sc0000044:519602..522224+ >transcript:BL96969_cuf1 ID=transcript:BL96969_cuf1|Name=transcript:BL96969_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=2538bp|location=Sequence derived from alignment at Sc0000044:519602..522224+ (Branchiostoma lanceolatum) GACTCCGAGTCCCACACCTGCCAGAAGTGCAGAAGACAGTTCAGACAGGC CCACCACTTTAAGAAGCACGTCAAGACGTGCACCTCTGCCAAGACGAAGA CGCGGCGCACCTACGGCTCCTTCACCTGTAAGACGTGTGAGAAAGTCTTC AGCCGCTCTGATTGGCTAAGACGTCACCAGGAGGTTCATAGCAAGGAGCG CCCGTTTAGATGTAAGCTGTGTTCGGCGTCGTACAAGCGCCGAGACGCGC TACAGCGGCACGAGCTGATCCAACACACCTGGCCCGACGAACAGGTGAAG AAAGCAGCAGCTAGCGAGGCCAGGTGTGTGAAGTGCGGGAAGGTGTACAT GGCAGGGGAGATCCCACGTCACATGGCCATGTCGCACTCTTACAACCCGG ACTCGGAAAACATTTCGGACTCTGAAAATATGTCGCACTCCACACCATCA GAGCAGCCACACGCTGACGCAGAATTGTCACACTCTGCACAATTGGGACA ACAAACAACTGACCCGGACTCTGAAAATATTTCTCACTTCACACGATCAG AACAACTACAGAGCGGCCTAGACGTTGCAAAATTTTCAAACTTTGCACCA TCAGGACAGTCACAAGCAGATCTAGGGCCTACCTTTGAAAACAAGCTCAG CACGACAAACTCAGATATGGTGGAGGGTGAAGCGCACAAGATATATCCAG CTTTAGGGATTGGACAACGCATCACGGAGTCGGAACAAAAACAGGTACTA GTAAATACCGACTCAGGAAACAATCATTGTGAGCTGATAGATGAAACAAA AGGCAAGCAACTAGCCCCTGCGCAGCAAGACACAGACTCACAAAGCGACT CCGAGTCCCACACCTGCCAGAAGTGCAGAAGACAGTTCAGACAGGCCCAC CACTTTAAGAAGCACGTCAAGACGTGCACCTCTGCCAAGACGAAGACGCG GCGCACCTACGGCTCCTTCACCTGTAAGACGTGTGAGAAAGTCTTCAGCC GCTCTGATTGGCTAAGACGTCACCAGGAGGTTCATAGCAAGGAGCGCCCG TTTAGATGTAAGCTGTGTTCGGCGTCGTACAAGCGCCGAGACGCGCTACA GCGGCACGAGCTGATCCAACACACCTGGCCCGACGAACAGGTGAAGAAAG CAGCAGCTAGCGAGGCCAGGTGTGTGAAGTGCGGGAAGGTGTACATGGCA GGGGAGATCCCACGTCACATGGCCATGTCGCACTCTTACAACCCGGACTC GGAAAACATTTCGGACTCTGAAAATATGTCGCACTCCACACCATCAGAGC AGCCACACGCTGACGCAGAATTGTCACACTCTGCACAATTGGGACAACAA ACAACTGACCCGGACTCTGAAAATATTTCTCACTTCACACGATCAGAACA ACTACAGAGCGGCCTAGACGTTGCAAAATTTTCAAACTTTGCACCATCAG GACAGTCACAAGCAGATCTAGGGCCTACCTTTGAAAACAAGCTCAGCACG ACAAACTCAGATATGGTGGAGGGTGAAGCGCACAAGATATATCCAGCTTT AGGGATTGGACAACGCATCACGGAGTCGGAACAAAAACAGGTACTAGTAA ATACCGACTCAGGAAACAATCATTGTGAGCTGATAGATGAAACAAAAGGC AAGCAACTAGCCCCTGCGCAGCAAGACACAGACTCACAAAGCGACTCCGA GTCCCACACCTGCCAGAAGTGCAGAAGACAGTTCAGACAGGCCCACCACT TTAAGAAGCACGTCAAGACGTGCACCTCTGCCAAGACGAAGACGCGGCGC ACCTACGGCTCCTTCACCTGTAAGACGTGTGAGAAAGTCTTCAGCCGCTC TGATTGGCTAAGACGTCACCAGGAGGTTCATAGCAAGGAGCGCCCGTTTA GATGTAAGCTGTGTTCGGCGTCGTACAAGCGCCGAGACGCGCTACAGCGG CACGAGCTGATCCAACACACCTGGCCCGACGAACAGGTGAAGAAAGCAGC AGCTAGCGAGGCCAGGTGTGTGAAGTGCGGGAAGGTGTACATGGCAGGGG AGATCCCACGTCACATGGCCATGTCGCACTCTTACAACCCGGACTCGGAA AACATTTCGGACTCTGAAAATATGTCGCACTCCACACCATCAGAGCAGCC ACACGCTGACGCAGAATTGTCACACTCTGCACAATTGGGACAACAAACAA CTGACCCGGACTCTGAAAATATTTCTCACTTCACACGATCAGAACAACTA CAGAGCGGCCTAGACGTTGCAAAATTTTCAAACTTTGCACCATCAGGACA GTCACAAGCAGATCTAGGGCCTACCTTTGAAAACAAGCTCAGCACGACAA ACTCAGATATGGTGGAGGGTGAAGCGCACAAGATATATCCAGCTTTAGGG ATTGGACAACGCATCACGGAGTCGGAACAAAAACAGGTACTAGTAAATAC CGACTCAGGAAACAATCATTGTGAGCTGATAGATGAAACAAAAGGCAAGC AACTAGCCCCTGCGCAGCAAGACACAGACTCACAAAGC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
Sc0000044 | genome | Sc0000044:519602..522224 + |
Properties
Property Name | Value |
Transcript id | BL96969_cuf1 |
Biotype | protein_coding |
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