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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003899 ID=TCONS_00003899|Name=TCONS_00003899|organism=Clytia hemisphaerica|type=transcript|length=3552bp
AAGTCTGGACTGCGGGCAGTTGAATTGTATGTAAAACGACGGCATGTAAT
ATACAAAGAACGTCGttcaacaaaagaaagattGCTTCAATTATTGCTCG
TTGATTCACACTTGAGACAAGTTGTTTGAAGATAATTTCATCTCTCAGCT
CCTTATGGTCGTTTCCGAATTCAGTCGCTCGAATTCTCGTTAAAAATCAA
CAATCTATCCTTCAAAGATATTATTTCATGGTCGGTTATCTGCATTGAAG
CATATCTTACCTGATTCTCTGCATCGTTACAAAATATCCAAAGCATCACG
CCGCTCGGCGTTCAATCGAGCCAAAATGCCAATGCTGATACCAAACCACC
AAAGCATCTCGAAAAGTATAGAGAGTATCTCTAAAAACGGAATCGATATA
GATGCGGTAGTCAGGAACAGTCTTTCCAAGTTATCAAAATCACATTCTCA
ATGTGGGTACGCGAAACCATCTGAGGAGCTTCTTAAGCGTGAAACAAAAC
CGAAAGTGCAAAGCGTTTCACCGTGCGATAAAACACGACCCAATAAAGTG
ATGCCACTCACGCCACGGAATAAAAATTCTTCAGACTCTAACAAcgcaaa
caaaaaacaatctaAAGTTTCATCACTCCGCGCTAaaatacaacaacaaa
aactaGCCGCTGAAGGTCTtagtaaaaatattaaaaaagaaaacaggaCT
GAGTCTAATGAGGAGTTAGACGATAGCTTGACTAGCCTGCAATGGCTGAC
TGGTGTTAAAGTAAACGATTTAATGGAGGGCAAACCGATTTCTTACGCAC
CCTTATCTCCCGCCCCATCGAACTGTAGTGACGAGGGTGAAGAACAAAAA
TTCGGGCGTGGATACCGATATCATTCTGATAGTGTTGTAGACTATCGAAC
GAACAGTCGTATCAAACCGCCCTATTCATATGCCGCCCTTATTATCATGG
CAATGAAATCGAAAAGTTGTTCTAAAATGACATTGAGTGAGATTTATAAA
TGGATCACAGATAATTTTGTCTTCTATAAACATGCAGAACCTAGTTGGCA
GAACTCTATTCGTCACAATCTTTCATTAAACAAATGTTTCGCAAAAATAC
CACGTAACAAGGGTGACCCTGGTAAAGGCGGTTACTGGAGTATCGTTCCT
GAATACGCGGACAAACTCCTGGAATCGAACATCCGGAAACGACGTTCCTC
GATGATGGATTACGGCTGTCAAGAATACATTAAACGCCAACGTTTAGATT
TGTTTGAAAGTCaacttttattaaaaatcaaagAAGGTTTACGATCACCG
ACAAACGAAAACGTCTTTCTTGACACGAACAATAATAATGATACGAACAA
TTCAAAACATAGCGATGATCACAATAAAACACTTTATAGAAATATCTATA
AACATGCTTCATCTTCAAGTACATCACCAATGTTTCCGCAACAACACGCG
ACCGCTACACCAGCCGATGCGGAACAATGCCGGATGGACCATCCATACGG
TAAAAATCCGTTTTCACGATTCATCTCCGATGAAGATAACATTAAAGCTT
TAGCTGATTCTTTACAAAGATCATCAAACTCTTTCACAGATCCAACATCT
ACATCATGCTCTAATTTCGATCTCAGTAGTTCTATGTTATTAAACACTTT
CGCAAACGCTATTAGGACGGATTGTAGTTGGAGCGCTGAACANTGTTATT
AAACACTTTTGCAAACGCTATTAGGACGGACTGTAGTTGGAGCGCTGAAC
AAAATTTCAATCATAGCGGAAATACGAGTGATTTGTTAAGCGGCAGTATG
TCGATGGTCAAGGAAGAACTCCTAGAAGCTCGTAATTTAACTTCGGAAGG
TGAACATAGTTCAACTCTCTTAGCTAAAGGACTGACAAGTAGTTTGAATT
CTTCCGGCGGGTTCACGGCAACGTTCTGTTTAAGTCCGCCGTTATCGGGT
GACGACGATACATTGTCGGATGATTTGGACGCCGATGAAGCACCGTTTAA
CGACTTGGATTTAACGATACGTGGTACGAGTATGACGTTGTTGAATCCGA
CACCGGAAATGATGGAGCAACTTGAAAATGACATTAAGGATGAGCCTTTA
TCTCCAGAATCAATTGATATGCAAAGCGAAGAATGAAATTTACCGTCAAA
TGTTGTTAAGGTCGGTGATTCTTGAAAGTTGTAAATTTGGAGAGATAAAA
TGGAAAATGGAGGCTGTTCTTTGGTAGTTGATGGGGTCCGTGCATAAAAC
AACTACATTCCAACGCCGAAAATTGAAGACTGGAAGATTTTACCGCCCTT
TATTTAAGGGCGTGGTCCTCtaatttgaacatttttcatgatttcatgGT
CATATCTGTTCCTTTGTTCTCGTTCGatttttatgaactttctaaTCTAA
AAAAGACACTATAAAAAGCTTATTAACTGAGTGAattaaaatgtttaatt
ttgcaaattttgttaaGAAACTATTACGGTTTTTTCTTTATAGCTAGTTT
TgaatttatacatttttttctcgaatttgCAACCGTTAATTTTTATGCTT
TAAGTTTTTAGCTTTTTATAACGGCAGATATTATGTCCAAATAGTTTACT
TTGCTTAGAAGTTCTTTAGAACTTCTGAAACATTTTCAGTTTCCGAGACA
TTCTCTATCATTTTAGGCTGTTTGCTTTCCTCTACAACTAGTATAATCGA
ATTTTTGCTTCTTACTACtagcggttttgtagaggtctgcgattcagact
tcTATCATCTGAATTTTAAGAATAACATATTCGACAAATACGGTTGACAG
ACGGTCGTTTTAACAACGTCTAACGTTCCATGGATGTTATCTGGATGTAA
AACGGACCTAGATACGACAATTTGTGGGTATGGAACGAACAACCAGGCTA
TTTCTAAAGATTACTAGTATAAAAAAAGCATCAAGTTGAACTTCACGGAA
CAAACTGCTTCCATTTACGGCTAACTACCTATCCAAAAGTTCACACTTAA
CATTTGAAATGATATAACATTCGTCTTAAAAATGCAAACTCGTACCGAAT
ATTTTGATATATTAACCAAGCTTGCCGCTCATAAAACTGTTCAACAATAC
CCTCGCAAAATTATGTGCCAGCGTGGTTTTAACTTATTTCAAAGTAGTTG
TGCCGCAGCACTATCCGAATTTTGGCGATTTTATTAGCTCGTTTGATTGT
AAAGCGAACTTTTGGATTTTCAGCCGTAATTACGGTAACAataatctctt
tttttttcgaatattcTCTTTGAAGAGAAGTAGGATTTAATTTTGGATTT
TCGTTGTTTCATTTATCATACAGTTTTCGTGTTTataaattaatattttc
atttgaaggagaatttgaaaaaataaccatTTAGTCATTATTGTAAAAGC
AATTATTAGGTCCATTATGAAAACAATCATTATTTGTACATAATAAACAT
TTATGgccctgtttttttttgtaaacataCTGAGTggtaaagttaaaaaa
attagattttccatgaaaaataatATCTGAAATATTATTCAGTCTTTTCA
AG Run BLAST on NCBI transcript from alignment at sc0000038:495636..509258+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003899 ID=TCONS_00003899|Name=TCONS_00003899|organism=Clytia hemisphaerica|type=transcript|length=13623bp|location=Sequence derived from alignment at sc0000038:495636..509258+ (Clytia hemisphaerica)
AAGTCTGGACTGCGGGCAGTTGAATTGTATGTAAAACGACGGCATGTAAG
TATTTCATCTGCTgtacatttttatgaaattttttctattcgccatgacg
tcataaaaagGTTACTGCCCATTCCCTAGTTGAAATTTCcattgtataaa
taaaaaaaaaataaaaaaaataaaaaatgtatactGATACAGTATTCCTC
GAATCAAAAAGTAATTTTCTGTCAGACCATCTATTGTGACGTCACTTATC
TGATTTTCGTTAATTTATTAATCTCTCTAAACCCAGAATAGCTTTTCCAT
CAGCTGATTTGACACAGATTTTCTCGGTTCTGTGGATTTTCGCTTAATAA
TGGATGTGATTTCTCATAAATTTGTAAAGGTgcgagaaaataaaaaaaaa
gccgCAAGGATGAACGCGGAATAATATTTGAGTTACAATAGCAGTTGAGA
TTGNAGGTgcgagaaaataaaaaaaagccgCAAGGATAAACGTGGAACAA
TATTTCAGTTACAATGGCAGTCGAGATCGGTACTCACGTATCTCATGGTA
TAAGTTTATCGCtttgtagtacactctgtgcgcattgtctgtttggtaaa
aaaattcccgtacggagccctctgcgatgaagtgtgatttataaatagca
acacttatattatcgtctcccctctctcatcaccaacactccatcgtagc
ggttggtttgaaaagtctcaaatgagaaaagacaatgacaacagaccctc
tacggcaatgaatctTGAAATTAGCtgctgggtctgtgtacagacaagct
CGCTACCAGTAGGGAAAGAATTGGTGGTGACTTTAGAACAAACACACGTT
AGGCTGTCAACTCACTGCTATCGTTTTTAGGGGTAGGGGTAAATCAACAT
TTTTTAGGGGCTATCTTCAAATCATGCTGTGCTAGAGTTTTTTTGATGTG
TTTCtacccaaataacaataatctgaaaaaaaaatacaatttcatgcatt
tttcagGAATTGCCGGACCAAAAACTGCCGATTTTGGTCCCAAAACCCCC
AAAATGGCAATTTCGTCATTTTACTGATATTTCTCCTTGTTTATGATCCC
ATATGAAGCCATTTAGTATTCAAAGTTGTTTGAATATAGTTTAGAAGTAC
TTAAAATATAATTTAGGTGCTTTCAACACCTTATTGGACCAAAAATTAGG
Cagatttgggccaaaaactcaaaaaaaggtaattttttgtcaattttgtt
aTGTAAAAGTTGCTTAAATGCACGTTATAGGCCTGAAAACTGCCATTCAT
TTCAAGGAAATCATTAATGCATCACAAGGAGTCAAGACCAGGGACCTCTg
ggtatagaatgggcttttttttatttatttctttaggaagaacactcaag
cttactcaaaacattgtgttttagaatgaaatacaattccataatggtag
actttggcaaatttctgacccaaaccattttggttttcccagagtatttc
cagaatactttcaacaccgaAAGAtatcaggaccctatttgaagccactt
ttgagattttagcctgagaaaattagagtttagctctaaatattgcgttt
tagtgggaaatgcaattccataatggcggactttggcagctttctaaccc
aaaccattttggttctctcagagtatatccagaatactttcaacaccaaa
agatttcaggacaccatttgaaaccatttttgacattttagcctgagaaa
atcagactttaactctaAATATCGCGTTTTAGTTGGAAATGCAATGCCAT
AATGGCAGACTAGGGCAAATTTCTGACCCAAACCATTTTGATTCTCCCAG
AGTATATCTAGAATACTTTCAACACCAAAAGatttcaggacaccatttga
aaccatttttgagattttagccagaGAAAATTAgtctttaactctaaata
tcgcgttttagttggaaatgcaatgccataatggcagactaggtcaaatt
tctgacccaaaacattttgattctcccagagtattttcagaatactttca
agagccaaagatttcaggacatcatttgaaatcatttttgagattttagc
ccaagaaaaccaagttttagcttgaaatattggcattttgcatgaaaact
caatttctagggcgccattatggacttataggaaatttttgaaaactcaa
gattgatttttcctggagctttctctgaagtgtttcattgctgaaaattt
cgagtgtgtaccttaaaaagtttaaaagttgtgggtcctcaaaaatgctg
ctttcgtgcattttgctacccagaatcggagaaaatcagcctttttagcc
tgaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNcaaaaccatccccactgggtttttaat
cttggaacaatagaatttctatccccatgagcatttcaataggaattttt
attcccaatgaggaaaaaggttccaaaaattaggtgggggtatgtcaaaa
atcatcaacaaaCCTTTTAGTATTTGTcttggattttagtaccgaccccc
cccctgcttataccaactttggatttatttttaaaacattgcTCCCATTT
ATTAAAGAAGCACTATgaagaaaatgatttctttAATACCCTCTCTTAAG
CATGtttaataaattttataaaGACCATTTAAGCTACCAGAAGAAGTTCC
TTACTCAGCAGTagtaaaatctcaaaataaaaaagactttaattctaagg
gcaaaacattaattttcgcactaaagtgaaaaatgtgtcacagaaataat
cgttttttagctttttttgtaaattgtccgaaagcaaccaaaaaataggt
ggtcttcatgacaaattgtcccaaaaacttttactaccagggtagtaaga
tacctcttccaagagtctgggtggtggtatgtaaaaattcataaaaatcc
ttttactactcatatatgtctgagatgtccgaccccccccctgctATAAC
GTGCATTTAAGCAACTTTTAcatgacaaaattgataaaaaattaaattaa
ttttttttgagtttttggcccaaatttgcctagtTTTTGGTCCCAAAAGG
TGTTGAAAGCACCAAAATTATATCTTAAGTACTTCTAAATTATATTCAAA
CAACTTTGAATACTAATTGGCTTCATATGGGATCATAAACAAGGATAAAT
ACCAGTAAAATGacgaaaattgctatttttggggTTTTGGGACCAAAATC
GGCAGTTTTTGGTCCGGCAATTCctgaaaaatgcatgaaattgaattttt
ttttcagattattgttatttgggtaGAACCACATCAAAAAAACTCTAGCA
CAGCATGAATTGAAGATAGCCCCATTTTACCCCCACCCCTATTTTCTCCC
CAAACTGTTCGGGTTGCAACTCTTTCTCTTCAATCATCCCGCCCCTGACT
CCGCCTCCTTACTTCTTTATCTTTGAAATTATTCTTTGACCTATTAAACT
GTGATGTCCCCCACCCTCTAGGGAAATCAGGTTAAAAAGTTAAGTGATCC
GGATGAAGGTTGAAACTAGATAAATATCGCTTGGGGAAAAGAAAGCTAAT
TCTTTTAGGACTTTTAAAGCCAGTTTGACAGTTCATATTTGAGGTCTGTA
TCGCTGGtttaatacacgttttcttttttataagagcatccaacattttt
gaggccttttgagttttaagcctaaaaatgttcttaacatgctcttatgT
TCCCAATTTTGAGAGTATTTATGTCCATTTTTCTGAGAAaacgggtgttt
tagagttatcaaagccctaaaatgttcttaacttgttcttaacatttttg
ccatagaagccttatgttcttatatagtttgttcttgcaAAAAAACGTAT
ATGCTGAGCTTGCAAAAACAGTGTTCCGACAACGAATTGCCTACTATAAA
GTTTGTTGACAATGTTCAAGATTACTGAAATCTGAATATTCGTGCTTCTC
GCACTCAATCCCTTTACTCATTATCAATTTAATACGAAATGGAGGTTTAA
TTACTTCTAATTACCTCAATGTACGAAAATTCACATTATAATGATCGCCT
ATATTTCCCTCGAGAcatatttgaaaatatactaTGAACCGTCATTCATG
GAATGTCTTGGAAATTagtaaaattatatttatttacTCGTCGCTATTGT
ACTAGTGCTAAAGTATGGGGAAAATGTCGTGAGTGAAGAAGAAATCTTTT
TATAGCTAGCAGAAGGAGGTAGATTTTTATAGCTCCTTGTAAAACATGTA
TGGATGACCAACATTTGTTTGTTTCCTTAGTTAGATGAAAGTCCGAGTAA
AGTGTTGTTTTTTAGATAGATGAAGTAGGGTGCCTTTAACTCACATGGGA
AGGAGCGATTGTGTCTTTTTTGTTAGCACGGGGTCCTACCGCCGGGTATG
CGATACGACTTGTGCTAGTACAACCATTCAAGCCAGGGCTGTTTGGATTT
GACTATCGATAAAATCACAGGAAATAGTGTTTATGTGTACCGAGTTAGTG
TTTACGTTACAAAAAATGTCTACATTTAATGAAGGGTGTTATTCAAACGC
CGTGAATGGTGGTCTGAGAATCTTCTCGGTAACAAATATACTGAACTAAC
CCCGGCCAGTCTGtaccactaactcgatcgggaagattcttccgaaatgg
gaagtaCCTTCTCGAACGGGAAGAACTTACTCGAATTTCTGCCGgtttgg
gaagattcttccgggGGAGTGGGCACTCATATTGTCTGATCAACGCATGT
ACCGCCCATAAGGGTAGGTTTTCGATACCATCGAAATTCACTGTAAGGGT
GAACTCTGGATAGAATGCACTATAAGGGTCTTAACTGAGCATTCACCGGG
CTAGAATCTACATATGTCAGTTATGTCAACTTAAcctagaaaactcaaat
caaaattcttgcacatttttcattcagtacaGTACTATATGACACTTATT
TTCATAATTAAGTTTATATCGGTAATCTCCTTCATCTTGGTAGGTCTTTT
CtccaggaaaaaattatttcttaatattttatcaTTACTTGGAAAGGGAG
ATGTCAAACCAATTCTATTTTTGAAATGagaattcataaaaatcattatt
caTTAGACTGATTCTCGATTGAGTAATTCCCATATCATTACTTTATCTTT
TCTTGCATTATTTATAGGATTTTCCTAAAAGCCGACTTTTTCAAATCTGG
TTCTAGAATTCTCGTACATGTATTTCAATCCTTTTTTAACTACCTAGTTT
ACCATAATAACGGCTATCTATCCaaaattttgttcaatattCAAATGAAA
GAATTTCCGTAGAAAATTACCGAATACTTAGATATACGAACGAAGTTCAC
TCATAAAAACCGCTCAGCGAAACCCTCCCAAATTATGTGCTAACTTGGCC
AAATCATGTGCCAAAGTGACTGTGCTGTAGAACTATTCGAATTTTTGTCT
CTTTGGCGCGTTTCACTGTTGCGCGAAAGATAGCCGTGAGTACGGTACCA
GGTTTCAACAAAAAAGCTCTGGTTCTCAGttccaatattttatcaaaTGA
TTTTCACCGGgtaaatgagacaggggtgttttctaGCAGGGATGACTTTT
CCCTTAGTTTTCCAAACactggaaatttttgaaagtttattcttCCACCT
CAGTTgatttttcaaccattttttcCTAGGTGGATAGGGGTCTAACCGGA
TCTGTGACACAGAggtttgtttaatttttgttaCCACTGAAATTGCTCTT
ATTCTGTTCTTATCTTCAAGGCAAGATTTAGCGTGTTTAGGACTTTTTTC
GCTTTTCTATGTACCTTTACCCTCAGTTCTTTTTAAATACATCATCCAAC
ACTTAGCTTTGTctcaaaattgttcttatatctTAAGCGTTTTTGagtct
cattgttcttataaaaagtgtgaTAAACGGGGACGGTGCTAATATGATCA
AGGGGCTGAGTTGGACCTTCCTTGACTGAATTTAACGCAACTCTCTCAaa
tacaaaaaagtaaaaactgcTTATTGCTAGCCTTAATCTTGTGTGTTGGA
TCTCTTTCATTTGAtaggaaagaaaattttaaggagAGTTAGAGGATTGA
GAGTGatgttgaaaatagaaatagtgTATAAGTGTTATTCAGTACGATGT
ATAAATGTGATATTCAcaagaaaaattattgataGCTATCAATTATTTAA
TACAATTTTCTCAATATGAttctttcttcctttttcaagatttttttatt
ttgagagtttacttttttttctcttaagaACGCACTCATTAGGTATATCC
GGTGATTTGGGGCTgttataattgtttttttaaattgtttgttTGCAGCT
TTCCTGCATGTATGATCTATAGGTCCTCTTCTTCGAAAGTTCATAGATAG
AAGTGCTATACCTGATGCATTTAAAAACAACTTTAAGAAATGGTATTATa
ctaatgttcttaaaatgttcttaagatgttcttatgaaGAAATTATATTA
AGTATgagaatattttatttttcgctATTACCAGTACTATgtgtcagttt
tttttaaatgaaaaatgaagaaagaaatatttcatttgTTATTTTATTCG
GGTTCATAGTCAACCTCACTGTAAGTCTGTCTCTGCATCGGCAAGTTTTT
CttggtttttcattttcagaattagGTCATATTTAGATGGATCCTATTGG
AGgctcgttttcgctttgttttaaaattgattGACGGATCGATTATTTCT
GAGAACCTGGTCTGGAGAACCACCAGCAGACTTCGGCGGAAACGGGAGGT
TATTTTTCCCCGAGTTTTTGTTAACTAGATCATTTATCTTTTTTGAAGCT
ATTGTACTCATGTCATTACAACCAATAGTTTCTGATTGAGGGTTAATCTC
GAAACCAAAATCTCAAGGAGTAAAACATATTGGGCGACAAAGCGGTATGT
AGAGTAAAAGAAGTACGGATGTATGACTTAGTTTAAACTGCGTGTAATAC
AGTGATACGAATGCGATAAAAAATATTAGTTTGTATAAcctagaaatttt
ttcattccGTTatgttttgttcaaattttgctCTGTCTGAATTAGTGGGC
TAGTCCAACATGAAGTTCTCGGTgcttttaatattttgaatatcTGGGAA
ATTTTGGGatggatatattatttttctaaaatttttctaCCGGGATACCA
ATCCACAGTTTTATTAGGACCCATCATTTTTTTAAGTTATTCTcaaggga
acaaattttaaGTCGCTTTCATCCTcacaagcccccccccccttcaacGC
GCTGTCTCACCATTGAATTTGTGAGAAAATTGtttctatatatttttaaa
gattgaaTTTTCCAAACGTGGTGAAAATACACTGTTTTTCAGTTTCCATA
AAAAAAAGcactatttcaaattttttataagaaagcaaATACAAAATCAT
CCGAAAGAAATTTCGAGTCACAAAATAACTCCGATtggcgccgaaatatt
tggcacaaaaggggaatttcctcagagttttaacattagacttaagactt
aaagcttaggatctcaggatctaaaagctcaaaaatgttccaataaggct
gagaatatagcttGGAAGCCACTTAatccctcccaaatcgaaaaattcaA
TGAAGCATAAttggaagtactgaaactgcaattctcgcccgatctttaaa
ttctgaaaaaccttaaaatacccaaaattgccaatatatttcggtgcTGG
Ttgtaaaagcaattttttttattgttctatgtattcttttgtttttaacc
tAATTTgattagaatatttttttttcgcatCCTAAAagattcttatgaaa
aaatatgttttattCCCACAGCATGTAAAGTTTTCTCGGAGGGGATTTTG
CTTGTATTTCCTTGTTGCTTCTTCGTTTCCAatccaaaatttacattaat
ttctaatttttcatgttgataattttcctttttttttcattttcttgctA
ATTTTCTTTTCCTAAAATAATATTTTNataattttccttttttttttcat
tttcttgctaattttttttcctaaaataatatttttttgggcCCGTCGAA
ATAATTTAAGgaagtaattttaattttttttttggaatcttttaCAATCA
TATGAAATCGtctttataaatttgtttgaattttgagTTTACTTATAAAT
CGCTTTGAAATCAGGAGATTTAGTGAAACAAGTTTTACGATTTCTAGACT
TAAGTGGAAAATTGAAATGTTGAAGAAACCCAATACTATCAACTTGTAAT
TATACTATAAAATCGAAAccatttcagtgaaaaaaaaagtttcgttATTT
GGAACCTTTGTCAACAATGGTTTCGAGAGTTTGTAGAAGTACCACGTTTC
CTTCCCCAATTTTCGTAATTGATAGTCGGATTGCTTGAAGAataccctct
tctcacagacccagtaggattttttcagccagtgaggATAAAAATAGCGG
ACTGACACTCGACGGGGATTGGTATTCCCATATTatttatgactggggat
ttcaattgttttgttttcaaaccagaaaattcagtggggatggaaaaaat
agcataacATTTTGTAGTGAGGATTAGTTTATCTTATTATCTTCAGTGAG
GAAAAAAAATGGAGGATgcttttccaccggggacgatattttgaacaatt
tttccagtgggaaagggTCCCAGTGattctgtgagaagggggtgtaagaA
TTTATAAAACATCCTCAGTCTAAAAACTAATACGTGTCAGTTCTCATCGT
TTTTGTTTTTCGGTATATGTAACAATTTAACCTATTTTGTCTTTTATTTG
CTTCATCGATATCTAACATAATACAAAACGAAtagcttttttttgttttg
ccaaAGAAATTTcgccaattttgaaatacatgcTAAAATGTTCCGCTACG
GTTTAAACCTCCATGATAATTTAGTGTTTATTTTTATGCTTTATGAAGAG
TTTGTTTGATATCCTTTTTCACTGTTTCAAGGCTTTTTTGGCAAATATAC
CATATTCTTCTCTTTCAAAATTCCTCCTTTGACGATattatttcatgttt
tataAGGGGAGATATATTGAGGTTTAAAGGCCTTTTAAAGGGAATGAATC
TTGGGAAAATAGGAGTCTTTGTAGGTCAAAACTTGTGTTGGATAGGAAGG
AAGCGAGGGAGAAGCTATAATGGAGACAAAATATTATGTAGTTCCTGGTT
GAATAATCTGAATAATTTAAGTGGTCCGGCAAAAACAATGCATCACGTCT
ATCTTTTATCAAATCAAAGTCCATATTTGATATCAAAATAGAACAGTTCC
TTTTAATTCAACCTATAACTGTATTCGTTTTTCGTTTCAGGTAATATACA
AAGAACGTCGttcaacaaaagaaagattGCTTCAATTATTGCTCGTTGAT
TCACACTTGAGACAAGTTGTTTGAAGATAATTTCATCTCTCAGCTCCTTA
TGGTCGTTTCCGAATTCAGTCGCTCGAATTCTCGTTAAAAATCAACAATC
TATCCTTCAAAGATATTATTTCATGGTCGGTTATCTGCATTGAAGCATAT
CTTACCTGATTCTCTGCATCGTTACAAAATATCCAAAGCATCACGCCGCT
CGGCGTTCAATCGAGCCAAAATGCCAATGCTGATACCAAACCACCAAAGC
ATCTCGAAAAGTATAGAGAGTATCTCTAAAAACGGAATCGATATAGATGC
GGTAGTCAGGAACAGTCTTTCCAAGTTATCAAAATCACATTCTCAATGTG
GGTACGCGAAACCATCTGAGGAGCTTCTTAAGCGTGAAACAAAACCGAAA
GTGCAAAGCGTTTCACCGTGCGATAAAACACGACCCAATAAAGTGATGCC
ACTCACGCCACGGAATAAAAATTCTTCAGACTCTAACAAcgcaaacaaaa
aacaatctaAAGTTTCATCACTCCGCGCTAaaatacaacaacaaaaacta
GCCGCTGAAGGTCTtagtaaaaatattaaaaaagaaaacaggaCTGAGTC
TAATGAGGAGTTAGACGATAGCTTGACTAGCCTGCAATGGCTGACTGGTG
TTAAAGTAAACGATTTAATGGAGGGCAAACCGATTTCTTACGCACCCTTA
TCTCCCGCCCCATCGAACTGTAGTGACGAGGGTGAAGAACAAAAATTCGG
GCGTGGATACCGATATCATTCTGATAGTGTTGTAGACTATCGAACGAACA
GTCGTATCAAACCGCCCTATTCATATGCCGCCCTTATTATCATGGCAATG
AAATCGAAAAGTTGTTCTAAAATGACATTGAGTGAGATTTATAAATGGAT
CACAGATAATTTTGTCTTCTATAAACATGCAGAACCTAGTTGGCAGGTAA
GATAGAAAGCTCATAACATTGGTAGACATAATATTTGTCATAAGTTTATA
TTTAAAGAGTATTTGACCGCCTCCAAACCCTCTCTTTTATCATCATTGTG
TGCGACAATAACGGCCATTGTCTCTAACGGCCTTGATACAACATTTATCA
GGGGAAGGGGTAAAATTAGTTTCAGACGTTACATTCTTGGACTCTAGTTA
ACTTTCAGAGTATGCCTTTGACAAGATTTGTTGAGAATTTAGACTTCTTC
ATAACGCGAGCTCGTTTATTTTTCGTCTCGTGCTCAGTCGTGAAATCAAG
CGTTTCCTTCTTTTATTTCCAGAACTCTATTCGTCACAATCTTTCATTAA
ACAAATGTTTCGCAAAAATACCACGTAACAAGGGTGACCCTGGTAAAGGC
GGTTACTGGAGTATCGTTCCTGAATACGCGGACAAACTCCTGGAATCGAA
CATCCGGAAACGACGTTCCTCGATGATGGATTACGGCTGTCAAGAATACA
TTAAACGCCAACGTTTAGATTTGTTTGAAAGTCaacttttattaaaaatc
aaagAAGGTTTACGATCACCGACAAACGAAAACGTCTTTCTTGACACGAA
CAATAATAATGATACGAACAATTCAAAACATAGCGATGATCACAATAAAA
CACTTTATAGAAATATCTATAAACATGCTTCATCTTCAAGTACATCACCA
ATGTTTCCGCAACAACACGCGACCGCTACACCAGCCGATGCGGAACAATG
CCGGATGGACCATCCATACGGTAAAAATCCGTTTTCACGATTCATCTCCG
ATGAAGATAACATTAAAGCTTTAGCTGATTCTTTACAAAGATCATCAAAC
TCTTTCACAGATCCAACATCTACATCATGCTCTAATTTCGATCTCAGTAG
TTCTATGTTATTAAACACTTTCGCAAACGCTATTAGGACGGATTGTAGTT
GGAGCGCTGAACANTGTTATTAAACACTTTTGCAAACGCTATTAGGACGG
ACTGTAGTTGGAGCGCTGAACAAAATTTCAATCATAGCGGAAATACGAGT
GATTTGTTAAGCGGCAGTATGTCGATGGTCAAGGAAGAACTCCTAGAAGC
TCGTAATTTAACTTCGGAAGGTGAACATAGTTCAACTCTCTTAGCTAAAG
GACTGACAAGTAGTTTGAATTCTTCCGGCGGGTTCACGGCAACGTTCTGT
TTAAGTCCGCCGTTATCGGGTGACGACGATACATTGTCGGATGATTTGGA
CGCCGATGAAGCACCGTTTAACGACTTGGATTTAACGATACGTGGTACGA
GTATGACGTTGTTGAATCCGACACCGGAAATGATGGAGCAACTTGAAAAT
GACATTAAGGATGAGCCTTTATCTCCAGAATCAATTGATATGCAAAGCGA
AGAATGAAATTTACCGTCAAATGTTGTTAAGGTCGGTGATTCTTGAAAGT
TGTAAATTTGGAGAGATAAAATGGAAAATGGAGGCTGTTCTTTGGTAGTT
GATGGGGTCCGTGCATAAAACAACTACATTCCAACGCCGAAAATTGAAGA
CTGGAAGATTTTACCGCCCTTTATTTAAGGGCGTGGTCCTCtaatttgaa
catttttcatgatttcatgGTCATATCTGTTCCTTTGTTCTCGTTCGatt
tttatgaactttctaaTCTAAAAAAGACACTATAAAAAGCTTATTAACTG
AGTGAattaaaatgtttaattttgcaaattttgttaaGAAACTATTACGG
TTTTTTCTTTATAGCTAGTTTTgaatttatacatttttttctcgaatttg
CAACCGTTAATTTTTATGCTTTAAGTTTTTAGCTTTTTATAACGGCAGAT
ATTATGTCCAAATAGTTTACTTTGCTTAGAAGTTCTTTAGAACTTCTGAA
ACATTTTCAGTTTCCGAGACATTCTCTATCATTTTAGGCTGTTTGCTTTC
CTCTACAACTAGTATAATCGAATTTTTGCTTCTTACTACtagcggttttg
tagaggtctgcgattcagacttcTATCATCTGAATTTTAAGAATAACATA
TTCGACAAATACGGTTGACAGACGGTCGTTTTAACAACGTCTAACGTTCC
ATGGATGTTATCTGGATGTAAAACGGACCTAGATACGACAATTTGTGGGT
ATGGAACGAACAACCAGGCTATTTCTAAAGATTACTAGTATAAAAAAAGC
ATCAAGTTGAACTTCACGGAACAAACTGCTTCCATTTACGGCTAACTACC
TATCCAAAAGTTCACACTTAACATTTGAAATGATATAACATTCGTCTTAA
AAATGCAAACTCGTACCGAATATTTTGATATATTAACCAAGCTTGCCGCT
CATAAAACTGTTCAACAATACCCTCGCAAAATTATGTGCCAGCGTGGTTT
TAACTTATTTCAAAGTAGTTGTGCCGCAGCACTATCCGAATTTTGGCGAT
TTTATTAGCTCGTTTGATTGTAAAGCGAACTTTTGGATTTTCAGCCGTAA
TTACGGTAACAataatctctttttttttcgaatattcTCTTTGAAGAGAA
GTAGGATTTAATTTTGGATTTTCGTTGTTTCATTTATCATACAGTTTTCG
TGTTTataaattaatattttcatttgaaggagaatttgaaaaaataacca
tTTAGTCATTATTGTAAAAGCAATTATTAGGTCCATTATGAAAACAATCA
TTATTTGTACATAATAAACATTTATGgccctgtttttttttgtaaacata
CTGAGTggtaaagttaaaaaaattagattttccatgaaaaataatATCTG
AAATATTATTCAGTCTTTTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003899-exon-sc0000038-1491911889:495636..495680 | TCONS_00003899-exon-sc0000038-1491911889:495636..495680 | Clytia hemisphaerica | exon |
| TCONS_00003899-exon-sc0000038-1510915933:495636..495680 | TCONS_00003899-exon-sc0000038-1510915933:495636..495680 | Clytia hemisphaerica | exon |
| TCONS_00003899-exon-sc0000038-1575043694:495636..495680 | TCONS_00003899-exon-sc0000038-1575043694:495636..495680 | Clytia hemisphaerica | exon |
| TCONS_00003899-exon-sc0000038-1491911889:505426..506431 | TCONS_00003899-exon-sc0000038-1491911889:505426..506431 | Clytia hemisphaerica | exon |
| TCONS_00003899-exon-sc0000038-1510915933:505426..506431 | TCONS_00003899-exon-sc0000038-1510915933:505426..506431 | Clytia hemisphaerica | exon |
| TCONS_00003899-exon-sc0000038-1575043694:505426..506431 | TCONS_00003899-exon-sc0000038-1575043694:505426..506431 | Clytia hemisphaerica | exon |
| TCONS_00003899-exon-sc0000038-1491911889:506758..509258 | TCONS_00003899-exon-sc0000038-1491911889:506758..509258 | Clytia hemisphaerica | exon |
| TCONS_00003899-exon-sc0000038-1510915933:506758..509258 | TCONS_00003899-exon-sc0000038-1510915933:506758..509258 | Clytia hemisphaerica | exon |
| TCONS_00003899-exon-sc0000038-1575043694:506758..509258 | TCONS_00003899-exon-sc0000038-1575043694:506758..509258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:495636..509258 + |
Blast
BLAST of TCONS_00003899 vs. Swiss-Prot (Human)
Match: FOXJ1 (Forkhead box protein J1 OS=Homo sapiens GN=FOXJ1 PE=1 SV=3) HSP 1 Score: 181.03 bits (458), Expect = 1.487e-48 Identity = 94/208 (45.19%), Postives = 122/208 (58.65%), Query Frame = 2
Query: 650 KLAAEGLSKNIKKENRTESNEELDDSLTSLQWLT-----GVKVNDLMEGK---------PISYAPLSPAPSNCSDEGEEQKFGR------------GYRYHSDSVVDYRTNSRIKPPYSYAALIIMAMKSKSCSKMTLSEIYKWITDNFVFYKHAEPSWQNSIRHNLSLNKCFAKIPRNKGDPGKGGYWSIVPEYADKLLESNIRKRR 1195
+L+ G ++ E E + LDDSLTSLQWL K L G P S AP SP ++ + G+ G+ G + VDY TN +KPPYSYA LI MAM++ +K+TLS IYKWITDNF +++HA+P+WQNSIRHNLSLNKCF K+PR K +PGKGG+W I P+YA++LL +KRR
Sbjct: 7 RLSGAGPAEEAGPEGGLEEPDALDDSLTSLQWLQEFSILNAKAPALPPGGTDPHGYHQVPGSAAPGSPLAADPACLGQPHTPGKPTSSCTSRSAPPGLQAPPPDDVDYATNPHVKPPYSYATLICMAMQASKATKITLSAIYKWITDNFCYFRHADPTWQNSIRHNLSLNKCFIKVPREKDEPGKGGFWRIDPQYAERLLSGAFKKRR 214
The following BLAST results are available for this feature:
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