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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL82988_cuf0 >transcript:BL82988_cuf0-protein ID=transcript:BL82988_cuf0-protein|Name=transcript:BL82988_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=127bp
MPLTSRMTVRRLAGLMTSLFLAGFTYAVFRTDRLFIRREYSWSLHARCLL
LQHQLLLVGVPGWSPEGHACRQLNGTELTLNATELLQNAAVTATKGPEPL
ENPKPAVEPPMPFDRVNRLMGYVGVPN Run BLAST on NCBI mRNA from alignment at Sc0000016:1179946..1183141- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL82988_cuf0 ID=transcript:BL82988_cuf0|Name=transcript:BL82988_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3196bp|location=Sequence derived from alignment at Sc0000016:1179946..1183141- (Branchiostoma lanceolatum)
CAGCTGACCGCACCTGGTAACATCTGACGGTCCGCGCCATGCCGCTCACA
TCCAGGGTAGGTGACCTCCACGTTCTCATGTCGGTATCTTCTTTCCCCAT
AGTCTACACTATTAATTAAAATCCTCCCACACCATAAGGTGTATAGGGCG
GTACCCTTTCCCGTTACATAGCCCTGGGCCACTCTGTGGTGCAATCACTG
CAGCAGGGGGCTAGTCCACTGGCAGTAGAGTGTGTTTAACTACCATACTG
TTTCAGAAGTATGTACCATTTTTATAAAGTCTTTGGTATGACTCAATTCG
CCTCTTGTCCAGATGTGTCGTACCTGGGAGTTGAACTCGGGCCTTCTGGT
TCCAAGTAATCAGAACCAGATGTGGTTAGTAACAGAAGCGCAGACCACGA
CACCACCACAGGGACACTCCGTTACTCTACACTATATCAGCTGAGATTTA
CCTTCGCCGAGAAAGTCTTTCATTCATTCACGGTTGTAAATGACTTGTAA
AAAAAAAAGACATCCAGGTCACCTTTTGCCTTCAGCGGAGTACGTAACTG
TTACTGACCTACTTAACAGACAGTGACGATAACAACTAAAGCCAACTGTG
GTAAGCTGTCTTAAGTAACTTTTAACTCAAAGCACCGGAACACGCAAGAT
TTGTGCATAACAATTCCTGTCCCTCGAGTTGTTTGCTTCTTATACCTAAA
TGTGATTTGATTCGTTTTTTTCTAAATTCTTTGTCCGTTTGTGCGTCCCT
GTCCCGTAATGTAGGGCACGGGTCAGTAGAAATTGGCACTGGTGACGGGG
TGTGTCGAAACTATATCTAATTTCAAGCCTTTTTCAATTTAGATAGCTCG
CTCGCTCGGTCATAAAACGGATTTTCAACAAGACTAAGTAATCCTCCGTA
GAGTTGGGTTCATGCATATAAAAGAACACTAAGACGTAGTTGCCTTTTCT
CTTATTTGTCTCCTCTCAAATGTGGCCTTGTCTTGTTAGTAGGGCACAAG
TTATGCTAGGGTCACATTTCCAATCCGGGGCCCGGCCGGGCAGTCTTTGG
GAACGAAAAGTATGATATAAAAGACAATAAAACACAAAACGTACCCAAAA
TTATTTAAGACCATAGCTTGTGCAAATTTATTGACATACATTTTGATTTT
TCGCTTCCTCAAACAGCCCGGCCGGGCCCCGGTTAGGAAATGTGACCCTA
GCATTAGTGGGGGTGACACGGCAAGATAGTTATAGGATGGCTGATGGTTA
CGGGCTGGCTGCAAAAAGTGTATTATTTAGCCCCCCAAAAAGGCCGATTA
GAGCTGGCTGTGGAGGCCAGGTGACACTGATGTGTTGAAAGCTTTGGCGA
GGTGGGATTTATTTATTTTTGAAAATGTCCTTTTTTTCCTTTTCTTCTTT
ACGCAACAGAAGTTGTAAAACCATCCTGTAATTAAGAAATCGTGACCTAT
TTTGCGTAAATGTCAAAAATGAACAAAGCCAACTGAAATATTAATGACTT
ATTCTAATGTAATTGACCCTTCTTTGTTCGCACGACAATATAGGATTAGC
GTCGTGAAATGTCAGGATAGTAGTGCAAAGACAGTGGAATTTTATTTATT
TGTTGTCAAATGCAACAAGCACACACACACACATACGCACACACACACGC
ACACACACGCACACACACACACACACAGCTAGACAGTGGAATACATTGTT
GACTACGGTGTCTCTGTATCCGATCTGTTTGTCTGTGTGTTTGTCTTTTT
TTGGGGGGGTTAACGTCTGTTCGTATTTATCTGAATTCATTATCAGTAGA
GTGACAGGAAGTACAGGTCAGAGGAAGTAGAACAAGTGGTTAGTCGGACA
TGACAGTCTAGGTCATGGGGTCAATGGAATAGGCTACTAATTAACGGGGA
GGTATTATACGGTATTTGGTCCGTCTGTTTTCTGTGCATTTCCTGACAGG
GCTCGAAATTCATTTTCAAATAAACTTGAATTTCAGCAAAACATAATACC
AAAGTTTAATGCTACTGTCTCTCCTAAGAACTTCAATCTGTGATTCTATA
GCTAACTTGAAAATTTCAAACAAGCAATACATCAAATAAAGTAGAATAAA
ATGATATAATGCTTTTTCGGATAATTACATTTGAAGAATATTCTGTCTAC
TAGTGTACAATGGTACCTTTACCCTATAGCAAAAATATATAAAAATATAT
ATATAAATGAAATGAAATGAAATGAAATAGCCTACAAAAATATCTAGGTG
CACAGTTAAAAGTAAGGTGCACAGCTCCAATTTTGGGTTCACAAAGGTGT
ACATGCACCCATTATTTCGAGCCCTGTTATGATGTGATAGAAAAGCACCA
ACCAAAGAAAAAGAAAAAAAAACAACGCACGTCATATTTCTCTCTTCCAG
ATGACGGTGCGCAGGTTAGCTGGGTTGATGACGTCACTTTTCCTGGCTGG
ATTCACCTACGCCGTTTTCAGGACTGACAGACTGTTCATTAGACGGGTGA
GTGAGGCTGTTGAAGAATTTCCCCTTTTTCAGCAAAGAAATACCCTGTAT
GTTTCCTCTTCGTCCGGCTGGACCCAATAAATCCCGTGCAGCATACAGTC
AAACCTGTCCATTGTGAATACTCCAAGGATACAATTTCTCAACCTCAGAT
AGGCTTCTCAATGCGTGGATCGATGGCAAAAAAAATTATCAAAAGGACTA
CAAAGAGCGGCCACATGGGCAGGTGGTTCTCGTGCAGAGGTGATCTCTGG
TTCAGGTTTGACTGTACATCAATGGCCAGGTGGCCAGGTGGTCCTTATGT
AGAGGTGATCACTTGTACAGGTTTGACTGTATATCAATGGCCAGGTGATC
GTTATCCAGAGGTTGTACTAAGCACAGATTTTTGTCTTTCGTTTAAAGTG
AATGACGTGAAACTCCTGTACATTTGCAGGAGTATAGCTGGTCACTACAC
GCGAGATGTCTGCTGCTACAGCATCAGCTGTTGCTTGTAGGGGTCCCAGG
ATGGAGCCCTGAGGGACACGCATGTCGGCAGCTAAACGGCACAGAGCTGA
CGCTAAACGCAACAGAACTGTTACAAAACGCCGCAGTGACAGCAACAAAA
GGTCCTGAACCGTTGGAGAATCCGAAACCCGCGGTTGAACCCCCGATGCC
CTTTGACCGGGTCAACCGTCTCATGGGTTACGTCGGAGTACCGAAC Coding sequence (CDS) from alignment at Sc0000016:1179946..1183141- >transcript:BL82988_cuf0 ID=transcript:BL82988_cuf0|Name=transcript:BL82988_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=1143bp|location=Sequence derived from alignment at Sc0000016:1179946..1183141- (Branchiostoma lanceolatum)
ATGCCGCTCACATCCAGGATGACGGTGCGCAGGTTAGCTGGGTTGATGAC
GTCACTTTTCCTGGCTGGATTCACCTACGCCGTTTTCAGGACTGACAGAC
TGTTCATTAGACGGGAGTATAGCTGGTCACTACACGCGAGATGTCTGCTG
CTACAGCATCAGCTGTTGCTTGTAGGGGTCCCAGGATGGAGCCCTGAGGG
ACACGCATGTCGGCAGCTAAACGGCACAGAGCTGACGCTAAACGCAACAG
AACTGTTACAAAACGCCGCAGTGACAGCAACAAAAGGTCCTGAACCGTTG
GAGAATCCGAAACCCGCGGTTGAACCCCCGATGCCCTTTGACCGGGTCAA
CCGTCTCATGGGTTACGTCGGAGTACCGAACATGCCGCTCACATCCAGGA
TGACGGTGCGCAGGTTAGCTGGGTTGATGACGTCACTTTTCCTGGCTGGA
TTCACCTACGCCGTTTTCAGGACTGACAGACTGTTCATTAGACGGGAGTA
TAGCTGGTCACTACACGCGAGATGTCTGCTGCTACAGCATCAGCTGTTGC
TTGTAGGGGTCCCAGGATGGAGCCCTGAGGGACACGCATGTCGGCAGCTA
AACGGCACAGAGCTGACGCTAAACGCAACAGAACTGTTACAAAACGCCGC
AGTGACAGCAACAAAAGGTCCTGAACCGTTGGAGAATCCGAAACCCGCGG
TTGAACCCCCGATGCCCTTTGACCGGGTCAACCGTCTCATGGGTTACGTC
GGAGTACCGAACATGCCGCTCACATCCAGGATGACGGTGCGCAGGTTAGC
TGGGTTGATGACGTCACTTTTCCTGGCTGGATTCACCTACGCCGTTTTCA
GGACTGACAGACTGTTCATTAGACGGGAGTATAGCTGGTCACTACACGCG
AGATGTCTGCTGCTACAGCATCAGCTGTTGCTTGTAGGGGTCCCAGGATG
GAGCCCTGAGGGACACGCATGTCGGCAGCTAAACGGCACAGAGCTGACGC
TAAACGCAACAGAACTGTTACAAAACGCCGCAGTGACAGCAACAAAAGGT
CCTGAACCGTTGGAGAATCCGAAACCCGCGGTTGAACCCCCGATGCCCTT
TGACCGGGTCAACCGTCTCATGGGTTACGTCGGAGTACCGAAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000016 | genome | Sc0000016:1179946..1183141 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL82988_cuf0 |
| Biotype | protein_coding |
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