TCONS_00003885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003885
Unique NameTCONS_00003885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length514

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003885 ID=TCONS_00003885|Name=TCONS_00003885|organism=Clytia hemisphaerica|type=transcript|length=514bp
TTACAGATAAgactaaaaacaaaataaataaaatacaaatgaaACAACAA
AATTAATATACAAATCAACATTTCTGGTTGGACTGACCAAAGAAATTTGA
ACAAGAAAGTATGGCGAACACGAAGACAGAGAAGAACACAGGAGATGGTG
ATGACAATAAAAATATGACGAGTCAGAAAAAACACCTGGAAAAAGTCAAA
TATCTTTATGAAAaATGGCGTCAAAATCGTAAATTATACGAAGAACAGTT
GAAAACAGGGAAAGATAATGGAATATATTTTTGCAAAACCAAACAACGCC
ACAAGAACTTTCTAGATTTCACACCGCTGAACGTTAAAGAGTACATAAGG
GACTGGGAACTAGAAAATGACTGAGACTGGTTCACAAAAAGCCGTGATAC
AAAGGAATATTTTGGGATATTATACATAGGGTTGTTTATAACACACTGTA
TACTGCCATAGTCAACTTATAGATTACAACGTCTTGCTTGTACAATAAAC
TTCTATGAACCTAC
Run BLAST on NCBI

transcript from alignment at sc0000038:353992..355672+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003885 ID=TCONS_00003885|Name=TCONS_00003885|organism=Clytia hemisphaerica|type=transcript|length=1681bp|location=Sequence derived from alignment at sc0000038:353992..355672+ (Clytia hemisphaerica)
TTACAGATAAgactaaaaacaaaataaataaaatacaaatgaaACAACAA
AATTAATATACAAATCAACATTTCTGGTTGGACTGACCAAAGAAATTTGA
ACAAGAAAGTATGGCGAACACGAAGACAGAGAAGAACACAGGAGATGGTG
ATGACAATAAAAATATGACGAGTCAGAAAAAACACCTGGAAAAAGTCAAA
TATCTTTATGAAAGTAAGGGACTTTGTGTTACGAAGTAAATATAAttggc
tgttccattaaaaaaccattcAGGGGGTcaacgaaccttttcaagtcaaa
aaattcaaaatgtgtcgataccccctggaaaatggtgAAATTTGCAAAAG
TACCCGGGTTGGAACGGTTCCTTTAATACCTTAAAGTGAGAGTGGACGAA
CTGAAATCGGTCTTTTACGCCGTAAGATTTTGAGAATAGCTATTTACCcc
ctttggaaaaatgaaaaaagacccgctggaaatttttctcggattaccct
ctagaaatgttcgtccaccccctgtatggatataaaatggaatggcccaa
tgttcGTCCGTTCATGATAGTATGAGAAATAACAATTTGCATATTATCAA
CTtctcaaagtctttcaaagttctTAAAACGTTTTAACCTCTTAGTCTTT
AGAATCTCTGTATTTTGTCGTACTAATGgttctctttctttctttatttt
cagaATGGCGTCAAAATCGTAAATTATACGAAGAACAGTTGAAAACAGGG
AAAGATAGTAAGTTGAAACAGTTTTCCCTGTTGGAATCAGTAGTCTTTGT
ATCTGGATATTAATCTTGGCATTATTTGTTTCTACATTTTCTGCTGGGAA
GCGATGATATTTCGCTGGGCAATTTTATCTCTATTGTACGAGCAGCTAAC
AAGCACATTTCttcgaaatttgaaatttcaaggcAAGAAGATTTCCTTAA
AACTAGCTGTTTTCCCTCAGCAGATGAAAACAGACCAATATTTCTAGGGG
ATGACGTTATAAATAGTTAAAAATGTATTTCTAAATAGATGATATTGCAT
ACATTAACATTCCTTTTTTCAGATGGAATATATTTTTGCAAAACCAAACA
ACGCCACAAGAACTTTCTAGGTAAGCTGAAaactcatttttggacctacc
gcgGAGGCCCTTTGAATTAACCCATGTCTAGCTGTTCGTTCGTGTGTTCG
Tcggttaccagcttttctcgggattggcttattatttttttctgattttt
tgctcaatgatgcaaaatggcactACCCAAAATgcgacggagcccgattt
tcgagaaaaaaaatattgttagGGAAATTTTGGCAGAAAACTGCCTAAGA
ATTAGTAAAGCTCGAAGGATAATTAATGGATAAAGCTATAAACGaagttg
ttgttatttttaaacaagGCCAAGGTCATTGCATGAGGGTACTAGAATGG
AATTTCAACAtactttcacttttttttcataGATTTCACACCGCTGAACG
TTAAAGAGTACATAAGGGACTGGGAACTAGAAAATGACTGAGACTGGTTC
ACAAAAAGCCGTGATACAAAGGAATATTTTGGGATATTATACATAGGGTT
GTTTATAACACACTGTATACTGCCATAGTCAACTTATAGATTACAACGTC
TTGCTTGTACAATAAACTTCTATGAACCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002180XLOC_002180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003885-exon-sc0000038-1491911889:353992..354204TCONS_00003885-exon-sc0000038-1491911889:353992..354204Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1510915933:353992..354204TCONS_00003885-exon-sc0000038-1510915933:353992..354204Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1575043694:353992..354204TCONS_00003885-exon-sc0000038-1575043694:353992..354204Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1491911889:354695..354748TCONS_00003885-exon-sc0000038-1491911889:354695..354748Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1510915933:354695..354748TCONS_00003885-exon-sc0000038-1510915933:354695..354748Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1575043694:354695..354748TCONS_00003885-exon-sc0000038-1575043694:354695..354748Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1491911889:355064..355111TCONS_00003885-exon-sc0000038-1491911889:355064..355111Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1510915933:355064..355111TCONS_00003885-exon-sc0000038-1510915933:355064..355111Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1575043694:355064..355111TCONS_00003885-exon-sc0000038-1575043694:355064..355111Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1491911889:355474..355672TCONS_00003885-exon-sc0000038-1491911889:355474..355672Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1510915933:355474..355672TCONS_00003885-exon-sc0000038-1510915933:355474..355672Clytia hemisphaericaexon
TCONS_00003885-exon-sc0000038-1575043694:355474..355672TCONS_00003885-exon-sc0000038-1575043694:355474..355672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:353992..355672 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
136.909	143.15	69.1446	75.8937	48.9418	40.1619	33.0502	31.2212	18.624	19.305	20.5056	16.8107	10.9853	10.5246	14.0027	11.6247	13.2728	15.3048	6.18256	11.6453	14.8454	12.1782	66.9521	55.4128	44.9597	44.5839	12.7599	10.5537	34.3424	37.7518
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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