transcript:BL96851_cuf3 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL96851_cuf3
Unique Nametranscript:BL96851_cuf3
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL96851_cuf3

>transcript:BL96851_cuf3-protein ID=transcript:BL96851_cuf3-protein|Name=transcript:BL96851_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=170bp
KTSPMYYGIIYACGSASAALGYVVSSVFLSFFVDFDRVDTASVTINPYDS
RWIGAWWLGFLCVGVPTVIVSFPFFCFPKSLPVPDEEEEEDERNVKQKPQ
SGDDPGIIKGIFVQGRSVLTNTVYMVMLCASIFSVAIVQGFTLYIPKLVE
VNFGLTASAASLFTGAICIP
Run BLAST on NCBI

mRNA from alignment at Sc0000007:5587743..5590239+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL96851_cuf3 ID=transcript:BL96851_cuf3|Name=transcript:BL96851_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=2497bp|location=Sequence derived from alignment at Sc0000007:5587743..5590239+ (Branchiostoma lanceolatum)
AGAAAACGTCCCCTATGTACTATGGTAGGTTTTTAATTATATCGTTGTTT
GGTTGAAATTCACATTTTGTTAATTGTCTCTTTGTTTCATTATGTATACA
GGAAGACCCTTGTTTAACAGTGTGAAATGTCATTTTGTTAAAACTAAACA
CAGCTATACAAGAGTAAGGCATGTTAAGGAGGACCAGAAAACCTAAAACT
TTAGTCATTAACATGGTGATGAGGGGGATATGAACTCAGATACGTTTGGG
ACCGCATTCTTCACAATGCAGCAGCGACACCTAGCTGCAGTGCGAATTAG
AACCAGGCAGTATTGCACCAAGGATGGTAGCAGACAGATGTACAAGGAAG
TTTGTTAAACCTGTCGAAATGGCACTACGTTTCAGGTATCATCTACGCCT
GTGGGTCAGCATCTGCGGCCCTGGGTTATGTGGTCAGCTCCGTTTTCCTG
TCGTTCTTTGTGGACTTCGACAGAGTGGACACCGCCTCGGTCACCATCAA
TCCCTAGTACTTGAAATTACTTGTATACAGTATAATGTTTCCAGTAGTAC
GTTATAAGGCCTTATGATGGCAACGTGGTATTGTGGTTAGAGTTGTTGAC
TTACAATCCAAAGGTTCTAGGTTCTCCTAGAAAGTTCACGGGAAATACAT
ACTCTACCAACTAGTAGATATAAACGAGTACCTAGCTTCAGTTAGGAACG
TCCTAACGCATGGGACGTATACGTAACGCCGGAAGTCCCATGTTTCAGTA
AAGCCACACCTCGAGCACGTCAAAGAACCCGCAACATTTTCGGATAAGAG
TGACTGTTTCTTTATTAGTTAATAAAATAAATGAAAATAAATAGATTAAA
TAACTTGTCTCTTTATTTGCGTTAATTGTTCACTGCATTCAAACATTGAA
ATTATACGTCGGAACTGGCCGTGATATGATTATTATCGTCATCATCATAT
CACGGCTTTGTTGGATGACACGAATGTTTGAATATTCTAGCTGAATAATT
TGTTTTACTGCCACTTTTTCCACAGTGACTCCCGGTGGATCGGCGCCTGG
TGGCTGGGGTTCCTGTGTGTGGGCGTGCCGACAGTCATCGTCTCCTTCCC
CTTCTTCTGCTTCCCCAAGTCTCTTCCGGTACCGGACGAGGAGGAGGAGG
AAGATGAAAGGAACGTCAAGCAAAAACCGCAAAGTGGCGATGATCCAGGG
ATTATCAAAGGTACGGGGTTTCACGCTCACGTGACTATGACGTCATGATT
GTCCGCCATGTTGGATGGTTAACTTTCCTCCAATGGTACCTTCAGCGGCT
TCAGCCCTATATTCACCATGTCTTGATAGATTGCACATTCATTTTCACTC
ATTTTGGGACGCAAAACTGGTAGCCTCGAGTATTCAGGAGTGCCATACCT
CTGCACGTAACCCACATGTAACCCACAGCGAGTTTAGAGCAGGTGTTTTA
ACAAGTTTTCTTCAACCTGTACATTTGTTTGACACCCCTCCCTCTTTCCA
CAGGGATATTTGTACAAGGGCGGAGCGTTTTGACCAACACAGTCTACATG
GTGATGCTTTGCGCAAGTATCTTTTCTGTGGCCATAGTGCAGGGCTTCAC
CCTCTACATACCCAAACTGGTGGAAGTGAACTTCGGCCTGACAGCATCGG
CAGCAAGTCTCTTCACTGGTTAGTGACAATCAAATAATTAATCAATAGAT
CAATCGATTAGTCAACCCATCTTTTATCACAGCCCGGCTAGCTCAGTCGG
TAGNCTCTACACTGGTTAGTGACAATCAAATAATTAATTAATAGATCAAT
CGATCAGTCAACTAATCTTTTATCACAGTCCGGCTAGCTCAGTCGGTAGA
GCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGCCCCGCGTTGGGCG
AGCATTGTTTTTCCTTTTTTGTTGTCTTTTCATATAGTTTTCCTGACTTT
TATCATAGACATGCCGTCCGACCTAAAGACCATGCACAACACTCAATATT
CTATTATATTAGATTTTGAGTGTTGCTGTAAGTCTCATATTTGTAAAGTG
CTGCAGTGATCCAAGCAACAATTTACGCGTCGTAACAGTTACTCAACTGG
ATTGATTTCGGAAACGGTCAGCATCCACTACCTTTCGTCAGTAATTTCCG
AAAGATCTGAGGTTCACAAGGTTTTGATTAAAACTACGTATTATTTAATG
ATAAATTATATGTAAATGAGGGAAGACAAATTTCAAAAAGCCCAATAGCA
AACAAATATACGTCAAGACAAGGTTTATTTTAATGAATAAATTAGCATCT
GTCGTCTGAGTAAAGGAGCTAATGTTTCCTCGCGGGGTAGTAGCGCAGGG
CCCAGGCCCAGTTCGATACGTAGGCCTCCTTTCCTGTTGAGAGTGGGATT
CATATCTACGTATCAAGCAACCATGGATATCAGATAGTAGTAATTAATGA
AGATAAACGGATTGTATTGTTTTGTCCAGGAGCTATCTGCATTCCTG

Coding sequence (CDS) from alignment at Sc0000007:5587743..5590239+

>transcript:BL96851_cuf3 ID=transcript:BL96851_cuf3|Name=transcript:BL96851_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2550bp|location=Sequence derived from alignment at Sc0000007:5587743..5590239+ (Branchiostoma lanceolatum)
AAAACGTCCCCTATGTACTATGGTATCATCTACGCCTGTGGGTCAGCATC
TGCGGCCCTGGGTTATGTGGTCAGCTCCGTTTTCCTGTCGTTCTTTGTGG
ACTTCGACAGAGTGGACACCGCCTCGGTCACCATCAATCCCTATGACTCC
CGGTGGATCGGCGCCTGGTGGCTGGGGTTCCTGTGTGTGGGCGTGCCGAC
AGTCATCGTCTCCTTCCCCTTCTTCTGCTTCCCCAAGTCTCTTCCGGTAC
CGGACGAGGAGGAGGAGGAAGATGAAAGGAACGTCAAGCAAAAACCGCAA
AGTGGCGATGATCCAGGGATTATCAAAGGGATATTTGTACAAGGGCGGAG
CGTTTTGACCAACACAGTCTACATGGTGATGCTTTGCGCAAGTATCTTTT
CTGTGGCCATAGTGCAGGGCTTCACCCTCTACATACCCAAACTGGTGGAA
GTGAACTTCGGCCTGACAGCATCGGCAGCAAGTCTCTTCACTGGAGCTAT
CTGCATTCCTAAAACGTCCCCTATGTACTATGGTATCATCTACGCCTGTG
GGTCAGCATCTGCGGCCCTGGGTTATGTGGTCAGCTCCGTTTTCCTGTCG
TTCTTTGTGGACTTCGACAGAGTGGACACCGCCTCGGTCACCATCAATCC
CTATGACTCCCGGTGGATCGGCGCCTGGTGGCTGGGGTTCCTGTGTGTGG
GCGTGCCGACAGTCATCGTCTCCTTCCCCTTCTTCTGCTTCCCCAAGTCT
CTTCCGGTACCGGACGAGGAGGAGGAGGAAGATGAAAGGAACGTCAAGCA
AAAACCGCAAAGTGGCGATGATCCAGGGATTATCAAAGGGATATTTGTAC
AAGGGCGGAGCGTTTTGACCAACACAGTCTACATGGTGATGCTTTGCGCA
AGTATCTTTTCTGTGGCCATAGTGCAGGGCTTCACCCTCTACATACCCAA
ACTGGTGGAAGTGAACTTCGGCCTGACAGCATCGGCAGCAAGTCTCTTCA
CTGGAGCTATCTGCATTCCTAAAACGTCCCCTATGTACTATGGTATCATC
TACGCCTGTGGGTCAGCATCTGCGGCCCTGGGTTATGTGGTCAGCTCCGT
TTTCCTGTCGTTCTTTGTGGACTTCGACAGAGTGGACACCGCCTCGGTCA
CCATCAATCCCTATGACTCCCGGTGGATCGGCGCCTGGTGGCTGGGGTTC
CTGTGTGTGGGCGTGCCGACAGTCATCGTCTCCTTCCCCTTCTTCTGCTT
CCCCAAGTCTCTTCCGGTACCGGACGAGGAGGAGGAGGAAGATGAAAGGA
ACGTCAAGCAAAAACCGCAAAGTGGCGATGATCCAGGGATTATCAAAGGG
ATATTTGTACAAGGGCGGAGCGTTTTGACCAACACAGTCTACATGGTGAT
GCTTTGCGCAAGTATCTTTTCTGTGGCCATAGTGCAGGGCTTCACCCTCT
ACATACCCAAACTGGTGGAAGTGAACTTCGGCCTGACAGCATCGGCAGCA
AGTCTCTTCACTGGAGCTATCTGCATTCCTAAAACGTCCCCTATGTACTA
TGGTATCATCTACGCCTGTGGGTCAGCATCTGCGGCCCTGGGTTATGTGG
TCAGCTCCGTTTTCCTGTCGTTCTTTGTGGACTTCGACAGAGTGGACACC
GCCTCGGTCACCATCAATCCCTATGACTCCCGGTGGATCGGCGCCTGGTG
GCTGGGGTTCCTGTGTGTGGGCGTGCCGACAGTCATCGTCTCCTTCCCCT
TCTTCTGCTTCCCCAAGTCTCTTCCGGTACCGGACGAGGAGGAGGAGGAA
GATGAAAGGAACGTCAAGCAAAAACCGCAAAGTGGCGATGATCCAGGGAT
TATCAAAGGGATATTTGTACAAGGGCGGAGCGTTTTGACCAACACAGTCT
ACATGGTGATGCTTTGCGCAAGTATCTTTTCTGTGGCCATAGTGCAGGGC
TTCACCCTCTACATACCCAAACTGGTGGAAGTGAACTTCGGCCTGACAGC
ATCGGCAGCAAGTCTCTTCACTGGAGCTATCTGCATTCCTAAAACGTCCC
CTATGTACTATGGTATCATCTACGCCTGTGGGTCAGCATCTGCGGCCCTG
GGTTATGTGGTCAGCTCCGTTTTCCTGTCGTTCTTTGTGGACTTCGACAG
AGTGGACACCGCCTCGGTCACCATCAATCCCTATGACTCCCGGTGGATCG
GCGCCTGGTGGCTGGGGTTCCTGTGTGTGGGCGTGCCGACAGTCATCGTC
TCCTTCCCCTTCTTCTGCTTCCCCAAGTCTCTTCCGGTACCGGACGAGGA
GGAGGAGGAAGATGAAAGGAACGTCAAGCAAAAACCGCAAAGTGGCGATG
ATCCAGGGATTATCAAAGGGATATTTGTACAAGGGCGGAGCGTTTTGACC
AACACAGTCTACATGGTGATGCTTTGCGCAAGTATCTTTTCTGTGGCCAT
AGTGCAGGGCTTCACCCTCTACATACCCAAACTGGTGGAAGTGAACTTCG
GCCTGACAGCATCGGCAGCAAGTCTCTTCACTGGAGCTATCTGCATTCCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL96851gene:BL96851Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL96851_cuf3transcript:BL96851_cuf3-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL96851_cuf3-E1BL96851_cuf3-E1-1564476830-78591Branchiostoma lanceolatumexon
BL96851_cuf3-E2BL96851_cuf3-E2-1564476830-78593Branchiostoma lanceolatumexon
BL96851_cuf3-E3BL96851_cuf3-E3-1564476830-78595Branchiostoma lanceolatumexon
BL96851_cuf3-E4BL96851_cuf3-E4-1564476830-78597Branchiostoma lanceolatumexon
BL96851_cuf3-E5BL96851_cuf3-E5-1564476830-78600Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000007genomeSc0000007:5587743..5590239 +
Properties
Property NameValue
Transcript idBL96851_cuf3
Biotypeprotein_coding