|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003873 ID=TCONS_00003873|Name=TCONS_00003873|organism=Clytia hemisphaerica|type=transcript|length=550bp
AATCGAAGTAGGATGAGTTTTTACTTTGCTTAGACATGAATGTAATCATA
TGACCTGCAATATCATAGGAGAACAAACTAATttttaaaagttgtttttt
agTTAACGGGAAGAGGAGGATTCAgCAAGATGGGTACCTCACAATCAAAG
TGCAGTTACTGTCAGAATCACGAATCTGACAATCACTCTAGCTACTGGTG
TGAGGGATCTTTCTCGTGCACTTGTAAGTGCAATGTTGGTGGTGATCACG
ATGTGGCGCAGAAAACTGCTGCGATAGCCGGTGGCGTTGGTGCTGCAGTA
GGTGGCGTTGCTCTGACTGTCTTGACTGGTGGTATTGGTGGTATGGCTCT
TGGTGCAGGCGTATCTTCTGCAACAAATGGAATCACAGCtattgcaaaaa
aaagaaaaaatgaatgctgCTTCTTATGTTTTGGACATTGAAGTAGGTAA
ACTTGGTGGTGCACTGACTGGTGGAGCGGGTAGCGCTGCTACCCAAGCCG
CTACAACCGGTGGCAAGATTGCTGCTGGTGCAGTACTTGGAGCAGTGGCT Run BLAST on NCBI protein sequence of TCONS_00003873-protein >TCONS_00003873-protein ID=TCONS_00003873-protein|Name=TCONS_00003873-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MGTSQSKCSYCQNHESDNHSSYWCEGSFSCTCKCNVGGDHDVAQKTAAIA
GGVGAAVGGVALTVLTGGIGGMALGAGVSSATNGITAIAKKRKNECCFLC
FGH Run BLAST on NCBI transcript from alignment at sc0000038:250955..254974+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003873 ID=TCONS_00003873|Name=TCONS_00003873|organism=Clytia hemisphaerica|type=transcript|length=4020bp|location=Sequence derived from alignment at sc0000038:250955..254974+ (Clytia hemisphaerica)
AATCGAAGTAGGATGAGTTTTTACTTTGCTTAGACATGAATGTAATCATA
TGACCTGCAATATCATAGGAGAACAAACTAATttttaaaagttgtttttt
agTTAACGGGAAGAGGAGGATTCAggtaatttttcattattttcaatttt
attaataAAGGAATGGAAAAACGCGAACCTTCTATTCTACTGATTTCACA
GCTTGATACATCCTAATGacaataaaccagctgcgctggaaggtcagcct
aaattgcttaatatgattagaaagatatgttgttaaaaattgatatgatt
CACTAAAACGAGAGTAATCATCAAATTTACGGTTGTATACAATATGGATT
AACGAAAATATGCCATGTTACAATCTGTATGACAGAATAATTATTCGTCT
CTTAATTNtgaaagttttaaattagtctctctaagggtcagaaaattcag
gatttttatttagtccatttatatacatttattatttatcattaaTATTC
CAGAATGTTTAAGTGTCCGCCATCAAATCGCAGTGAAAagcgcaagtcta
gaaaaaatcatttttacgtcaataatttgatgaagaacttcgttctttct
caaatttacataggagctgtactttaatatacttgattaatttccattaa
cgctttatcataattatctcaaATTCGGTccaaaaaacaaacgtaactgc
cagtgaaaaacgcaagtctagaaaaaaatcatttttgcgtcNGAATCCTT
GCAAGGAAATTAAATGCAAggcatacatgttttttttttataagcaagtc
tatgccccttggtcaggctcgtgtatgcttaagttctcaaagcatccagg
catagtttatgcttattatatgcttaagaatcatgcttatgattcaNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgct
gtactttaatatacttgatcaatttccattaacgctttatcataattatc
tccagtcggtccaaaaaacaaacgtaactgccagtgaaaaatgCACACAA
AGTctaggaaaaaatcatttttgcgtcaataatttgatgaagaacttcgg
tctttctcaaattcacataggagcggtactttaatatacttgatcaattt
ccatttacgctttatcataattatctccagtcggtccaaaaaacaaatgt
aactgccagtgaaaaacgcacaAACACACAAAGTctaggaaaaaatcatt
tttgtgtcaataatttgatgaagaacttcagtctttctcaaattcacata
ggagcggtactttagtatacttgatcaatttccatttacgctttatcaat
attatctccAGTCGGTCCgaaaaacaaacgtaactgccagtgaaaaacgc
acaAACACACAAAGTctaggaaaaaatcatttttgcgtcaataatttgat
gaagaacttcagtctttctcaaattcacataggagcggtactttagtata
cttgatcaatttccacttacgctttatcaatattatctccaagtccagaa
gaacaagcatataaaatgtctatcaaatcaaaagaaaacaccaagttcga
gaaaacattatttttgtgaataatcagataattaagctgtgaactgtaat
ataccgtgagattgggtaacttgcatcagtggaggctaacatgcatagcc
ctcaaatgaaagacctggctggtcattaaaataaaaagttaaatcaaaac
aaaagtggtagagtagagctgcaagtggagctgcgtagttctattttaat
gaccagccaggtcattcatttgagggctatgcatgttagccttcactgat
gcaagttacccaatctcacggtatatacactccatcaaattccagtaatt
gttggtggttattctatattcaagtccaaaatgaaaaaatatgttttcat
gctacaaaaaaataatgaggtctacaggtaaaaaaataactcacaattca
ggaaaaaacttgagcaaataagttaaaatcttcatactttaaagaaaaga
acatcctTATAATCTAACTCCAGTGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGTATCCCAACCGGAACGCTGCCCTAAAAAAGCT
GCAGAGCAAATACACAGATCGGGAAACCAAACTTAACCCGATcggataaa
aactttagaaatcggggaaacacgtttttttttctgaccctgCTTCTTAC
TTCTTCTGCTGCTGCGGAATAATAGCGAAATGAATGCTCAGCTGGGGCTG
accaaaaactttcttttacattctctatttatttacaatacAATGGCTTC
Ttacaatttattgaataaataaaaaaaatcatttttcactttcttctttt
taattatagtgttcttttattattatgCGCAAATCACGCAAATGTGTTTC
TTTTGtcttccaagaaaaaatatttttcgcgccaaatttttcccgataac
ttgttttccgaaaataatccgaaaacGGAATTATAAGTTGAGTCttaaac
gaagaaaaaaatcgtgaaagagatttgaagggtcaccggggctgaccaat
AAAGCTCGGTTCAGCATCAAAGTTCTGTGAAGAAATAGGTAGAAGATGTA
AGTGAAAGAACGAAATTCAACGTATTTTTTGAACTAGCTTTTTAACTGAA
CTAAAAATGGGAATTCGTTCAATCACCTTCCGTCCGATTCATGATGATAA
TGCATCATTGTAATGTCCtccatcacggacccaacagctgatttgtTGAA
ACGTATTGACtgtttttacgtcacttacaaccaatcagctgttgggtacG
TGGAAGAcgttgcaatggtgcatatcatgaattaacaCAAAATGACACTT
TCCCTGGTTGCACAACCTGCATAAAAActtgtgttttattttcagCAAGA
TGGGTACCTCACAATCAAAGTGCAGTTACTGTCAGAATCACGAATCTGAC
AATCACTCTAGCTACTGGTGTGAGGGATCTTTCTCGTGCACTTGTAAGTG
CAATGTTGGTGGTGATCACGATGTGGCGCAGAAAACTGCTGCGATAGCCG
GTGGCGTTGGTGCTGCAGTAGGTGGCGTTGCTCTGACTGTCTTGACTGGT
GGTATTGGTGGTATGGCTCTTGGTGCAGGCGTATCTTCTGCAACAAATGG
AATCACAGCtattgcaaaaaaaagaaaaaatgaatgctgCTTCTTATGTT
TTGGACATTGAAGTAGGTAAACTTGGTGGTGCACTGACTGGTGGAGCGGG
TAGCGCTGCTACCCAAGCCGCTACAACCGGTGGCAAGATTGCTGCTGGTG
CAGTACTTGGAGCAGTGGCT Coding sequence (CDS) from alignment at sc0000038:250955..254974+ >TCONS_00003873 ID=TCONS_00003873|Name=TCONS_00003873|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000038:250955..254974+ (Clytia hemisphaerica)
ATGGGTACCTCACAATCAAAGTGCAGTTACTGTCAGAATCACGAATCTGA
CAATCACTCTAGCTACTGGTGTGAGGGATCTTTCTCGTGCACTTGTAAGT
GCAATGTTGGTGGTGATCACGATGTGGCGCAGAAAACTGCTGCGATAGCC
GGTGGCGTTGGTGCTGCAGTAGGTGGCGTTGCTCTGACTGTCTTGACTGG
TGGTATTGGTGGTATGGCTCTTGGTGCAGGCGTATCTTCTGCAACAAATG
GAATCACAGCtattgcaaaaaaaagaaaaaatgaatgctgCTTCTTATGT
TTTGGACATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003873-exon-sc0000038-1491911889:250955..251079 | TCONS_00003873-exon-sc0000038-1491911889:250955..251079 | Clytia hemisphaerica | exon |
| TCONS_00003873-exon-sc0000038-1510915933:250955..251079 | TCONS_00003873-exon-sc0000038-1510915933:250955..251079 | Clytia hemisphaerica | exon |
| TCONS_00003873-exon-sc0000038-1575043694:250955..251079 | TCONS_00003873-exon-sc0000038-1575043694:250955..251079 | Clytia hemisphaerica | exon |
| TCONS_00003873-exon-sc0000038-1491911889:254550..254974 | TCONS_00003873-exon-sc0000038-1491911889:254550..254974 | Clytia hemisphaerica | exon |
| TCONS_00003873-exon-sc0000038-1510915933:254550..254974 | TCONS_00003873-exon-sc0000038-1510915933:254550..254974 | Clytia hemisphaerica | exon |
| TCONS_00003873-exon-sc0000038-1575043694:254550..254974 | TCONS_00003873-exon-sc0000038-1575043694:254550..254974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000038 | supercontig | sc0000038:250955..254974 + |
Blast
The following BLAST results are available for this feature:
|
