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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97480_cuf3 >transcript:BL97480_cuf3-protein ID=transcript:BL97480_cuf3-protein|Name=transcript:BL97480_cuf3|organism=Branchiostoma lanceolatum|type=polypeptide|length=280bp
HYDIWTGTYSQLLSLYTPSIVFDGLYVFVCLCVCVFVCLSVTMCSRYDVW
TGTWLRMKSMHEKRAHFHLSALGGRLYAVGGRNKEQNLKSVEAFLPRENR
WMYVAPLRGYSTGHAGCVCDGKLYTSGGYGTSMNNVPHERVLQFYDPEQN
AWQCRAPMTTGRIWHCMATLGDKLYVMGGDIGDARLHVLTAESYCPASDQ
WTAIAPMLTGQSEAGVAVIDDKIFLLGGYDWNNRDVIGSSQSYRPEDNIW
RREASLPQAAAGVACCVVRLPTRYSRMAED Run BLAST on NCBI mRNA from alignment at Sc0000011:1514486..1519528+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97480_cuf3 ID=transcript:BL97480_cuf3|Name=transcript:BL97480_cuf3|organism=Branchiostoma lanceolatum|type=mRNA|length=5043bp|location=Sequence derived from alignment at Sc0000011:1514486..1519528+ (Branchiostoma lanceolatum)
CACTATGACATATGGACAGGTACATACAGTCAGCTACTCTCTTTATACAC
TCCAAGTATTGTTTTTGATGGGCTATATGTCTTTGTGTGTCTGTGTGTGT
GCGTGTTTGTCTGTCTGTCTGTGACCATGTGCTCTCGCTACGACGTATGG
ACAGGTACGGACATTGAGCTGCTTCTTTGTATTGTTATCTGTTCTGTGTG
TGCATAAGAACCCACACACTTATCTATAACAGTAGGCATGTGCCCCGGTA
TGAGGATACATGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAG
GGGTGGGTACCGGTACCGTGTACCGGTACAAAACCGGTATTTCTTAATGG
ACCGGTCCAAAAAAAACGGTCCGTAAAAAATCAGTGGACCGGCCTATGGA
CCGATTAGAAAATTCATAGTACCAGGCTACCAGCAGGCGGCCACATAACT
GGTCTAAGAAAATACAAAACAGCAGATTTAACGAGTCGTTTTCGAAGACG
TTAGCTGTGAATCATATCTAGAAACACTTAAAGGATGAGTTAACAGACAG
CGAGGAGAGTATAGTTATAATTTTGAGACAAAGTGCAAACCTAAGAAATT
ATATCGTTCCAGACTTGACGTTTATTTGGAGACTTTTACGTGTGTCTCGC
TCTCCAAAATATGATGTACTGCGACACTACTATAATCAGGTACAGGTACA
GGTCCGGACCTGGACCTGACCCTCTGGACCTGGACCTGGACCGGACCTNT
ACAAGTCCGGACCTGGACCTGACCCCCTGGACCTGGACCTAGGACCTGGA
CCGGACCTGAATTTTATGTACCGGTACCCACCCCTAGTGGGGGTTCTTTT
TGTGTTCCAAGGTGTGGTTTTCCTTAAACACATGCAGGAACTCTGACTTA
ACATCATCTTTCCTTAATATCTAAACCCTTTTTATTTTCTTATCTTGAAG
GCACGTGGCTGCGGATGAAGTCCATGCACGAGAAGCGGGCGCACTTCCAC
CTTAGCGCGCTAGGGGGCAGGCTTTACGCCGTCGGTGGAAGGAACAAGGA
ACAGAACCTCAAGTCTGTGGAGGCCTTCCTTCCGAGGGAGAACAGGTGAC
TGCGTTTTCTTAAGATTCAGAAGTCTGGATTCCTTGGTTCCTCAGAGTAA
AGATTGAGCAAGCTGACAGGACGAAAACAGTCATGAATTGTTTGGAACAG
GTTGGTTAGTTGGAAGTTTGGAAGAAAACGTGCTGCCCTTTTTGCCGCTA
GGCACTACAAGGTGAACAACAACAAGTAATGATTGGTCAATTGGTTTATT
GATTGATTGATGTATTGGTTGATCAATTGACAGATGGATGTACACCCAGT
GCATTTTCATAGACAAGCTTGACCAAAACTTAGACATGTATTGCCTACTC
ATTAGATGATTGATTGATTGATGTATTGATTGATGTATTGACAGATGGAT
GTACGTGGCGCCTCTACGCGGGTACAGTACGGGTCACGCAGGGTGCGTCT
GCGACGGGAAGCTCTACACCAGCGGTGGCTACGGGACCTCCATGAACAAC
GTGCCCCACGAACGCGTTCTACAGTTCTACGACCCCGAACAGAACGCCTG
GCAGTGCCGTGCGCCCATGACGACCGGGCGCATCTGGCACTGCATGGCGA
CGCTCGGAGACAAACTCTACGTAATGGGCGGAGACATCGGCGACGCGAGA
CTTCACGTTCTAACTGCGGAATCGTACTGCCCGGCCTCAGACCAATGGAC
AGCCATCGCGCCGATGCTCACGGGACAGAGCGAAGCGGGCGTGGCGGTTA
TAGACGATAAAATCTTCCTCTTGGGAGGTTACGATTGGAACAATAGGGAC
GTGATCGGCAGTTCACAGTCGTACAGGCCGGAGGATAATATATGGAGACG
GGAGGCGAGCCTACCTCAGGCCGCGGCAGGAGTCGCGTGTTGTGTCGTGA
GACTACCGACAAGATACTCCCGTATGGCGGAGGATTGAGGAACCAAGAAA
GGGGAGAAATCTTTAAGAAATGACAAGTTAGTTAAGAAATGTTTAATGTT
GTTCCTTGGATAAGATTTTGTCAGGCCGTGTTTATTTGTTTACAAGGATG
ACACCCATGCAGGTTTTGTCTGTTTCCCCCACAAAAAAAGTTTTCCACCA
TACAAAGCAGCTGCAAAAATGAGCAAATACTTGCCATATATTGCAAAAAA
ATATTGGGATTTGGATACTGATGTTATAGAATGCAAAAGTCCATTCCAAA
ATCAAAGAAGAATCTATTGTTCTGTATACCGTACTCTGTGTGCATTTGCT
CAACCTTTTTTCGCATACATCCATTAGTTTTTGAAGATGTCATCCATGTA
ATCAAATCAACATGGCCTAACTACAAGGGGTAGATGGTAGATACATGTAC
TTAAGAAATGTTATTAAAGATTAGATAAGACTTTATTACTTAAATTTAAT
AATATAAACTTTAAGATGTATTACTATTCGGATAAGGTTTTGCTAATCAA
AGATATTCAACGTAGATATTCAAGAACTATAAATAATCATAATTACACTT
AGCAGGTAGATGGTTAAGAAATGTTGAATGTAGTTTGGTCTCATTTTTCT
CAAAGAGAAATGTTGTTTTACTTCATTCTAGAGCTTTAACCCTAACCCTC
CTAACTTCTGCTGTTACTGATTCAAATTTGGTTCATGAATGTTTGCCAAG
CATAGAGAAGGTTAAAAGATGATATTGTATCATCCTCAAGAAGACCAATT
ACAAAATGTTTTGTGAAAACATATTCCAGAACTTCGAATTTTCCAAGCAG
ATAGCTTTGTAATGTTGTGTTCTATATTTATATGCCTTGTATCTTTTTAC
GTAGCTATTTGATCAAAACCTGCACTTAGTGCACTCGCTTTTTCACTCAC
TCACTTATTCATTCACTCACTCACTCACTGTCTCATTCTCTCACTCCATC
AAGTTCATTCAAAACCATTCCATAACTTAATGATTTCCATGTATTTCCTT
CCTTCATTCCAGCAACTATTGAATTTCCGTCCACATTTTCATCATGTGTA
AGTTTGTTGATGACATTTGTAGTGTTTTCCTTGGCCTTCTTTGGCTTCTT
TTTTCATTTGTTATCTCCAGCAATGTTAGCTTATTTATGTATGATCTCAG
CCTAGTTCTTCTTTAGCAGTATTTGTTGTCTTTTTATCATACGTAGGTAT
TAAGAGGCTTTAGATGTTACTTTTAGTCAACATTTTTGCAATCTGGTAGG
TTTTATAACTGTCCTAATGTTAGGTAGATAGGCATTGGGAATTTCTTCAA
AGTGAAAAAAAAAATATTTATCCGGTTCTTCTAACTGCTGCTAAGGACTA
AGCTTAAAGGAGACAAAACAATATTTGAAATTTGTACAATGTTAAAAAGC
TGCAGTCTTGTATAGCCCTGCAATATATGATAAATAACTTTTGCAGCTTT
TAATAGTCAAAATAAGGCCATCCCAATTGTATTTCTCGTTTAACCTATTT
CACTATGTTTTAAAAAGATAATCACATGTATCATTCAGAAGCTATATCAA
TCCAGAAAATGGTCATAGTTAAACCAACAATCGGAAAACGCAAAAATTGG
AAATTTTGTGTGGTATACAGGCTATAGGAGATTCTTTTTAAACAGCAATC
TGACCTGCTAATGTTTTGGATACAAACTTAGCCACGTTTGGGACAGTGTT
CTCACCTCAAAAGCACCACCTACATCGGCTACTTACAGCGGTGAGAAGCA
GTACTCCAGTCAGAAGCTCTGAAGAAGGTGTCTGATAGACACTGAAAAGT
TAGCAGGTGAGATTACCTGGTTGTGTAAAAAGAGTCTCCTATACCCTATA
TTCTACTAGCCTGGATACCAGACCCCCAATCTCTAAAATATATATACTCG
ATATATTTTTTAGAGATTGGGGGTCTGGTATCCAGGCTAATATTCTACCA
ACCTGATGAAATTATTTTGGGGTGTGGTATTCAGTTGGAAGAAAAAGCTG
CCCATTATGTAAAGCTTGCTGCTGTAGTCATTTGTTTTAATTAAGAAATG
ATATATAAGACCAATTTTTCTATGAGGTTTATAAATGTTGTGTACATATC
CTAACTTATATATGTTATTTGTGTCGAAGACACAGTTAGTACATGTTTTA
CCTTACATTTAATGGTCAATTCTGATACCCTGGAGCAAGGACATTCCTAT
ATAATGTCCTTGCCTGGAGACAGACCGATTATACTGGACATGTTTTCAGA
AATATGACCAAATTGAGTGTGTTTGTTTGTCTGTCTGTTTGTATTGTATA
CCCAGTAAACTGCCTCATGGCATAACACAGCAGGTTTTTATTGAACAGTA
CAAGCTGCATATCCGGACAGATTTGTTTGATCCACTCACACCAGGAAGGA
CCCCTGTTCTTTTCGAAATGTGTGGTGGATTCTTTTACATGCTCGAGGTG
TGGCTCTCCTCAAACATGACCATGATGTGTTTTAGGTATGCATGTGAAGT
CGTTATGTGGGCAACATTACAAAGGATTCATTTCCATTTACCTGTATTTT
TGCCTCTGCATGTTTATGAAGACTAGACCAAATTTGGAAAAACGTTTTCC
AAGGTTTTAAAGGCCACAGTTTGAATGTCAGGAAATGACTATACAGTGGT
CAGATTCCTATTGAAATTTTTTAAACAATGTTTGACATGAGAAATAAACA
TTTGCTGTTTCGAATTTGGAAGAACTTCTCACAAGTTTAAAATGTCACAT
TTTAAAGACCGTTACAGTTATGATACCACTGGAATTGCCAATGGCTTATT
GAGGCACTATTGGCTACTCCCGCGAGGTGTCGCCAAAAGCGTTTCCATTT
TGTGAATGATCCAAATAAAGCTGCTTCTGTTATTGACTTTGACCATGTGT
CCAACTTTGTCTTAAACTACTACTTCCTCCAATGTTAAGTTAGTTAAAGT
ATCCCAAACATCTTCATTAGACGCATAGGGGTGGCGCCCATCTCCATTTC
TATAGCCCTTAAGCCACACATTTGTGCAAGTCACTACAGCAGG Coding sequence (CDS) from alignment at Sc0000011:1514486..1519528+ >transcript:BL97480_cuf3 ID=transcript:BL97480_cuf3|Name=transcript:BL97480_cuf3|organism=Branchiostoma lanceolatum|type=CDS|length=2529bp|location=Sequence derived from alignment at Sc0000011:1514486..1519528+ (Branchiostoma lanceolatum)
CACTATGACATATGGACAGGTACATACAGTCAGCTACTCTCTTTATACAC
TCCAAGTATTGTTTTTGATGGGCTATATGTCTTTGTGTGTCTGTGTGTGT
GCGTGTTTGTCTGTCTGTCTGTGACCATGTGCTCTCGCTACGACGTATGG
ACAGGCACGTGGCTGCGGATGAAGTCCATGCACGAGAAGCGGGCGCACTT
CCACCTTAGCGCGCTAGGGGGCAGGCTTTACGCCGTCGGTGGAAGGAACA
AGGAACAGAACCTCAAGTCTGTGGAGGCCTTCCTTCCGAGGGAGAACAGA
TGGATGTACGTGGCGCCTCTACGCGGGTACAGTACGGGTCACGCAGGGTG
CGTCTGCGACGGGAAGCTCTACACCAGCGGTGGCTACGGGACCTCCATGA
ACAACGTGCCCCACGAACGCGTTCTACAGTTCTACGACCCCGAACAGAAC
GCCTGGCAGTGCCGTGCGCCCATGACGACCGGGCGCATCTGGCACTGCAT
GGCGACGCTCGGAGACAAACTCTACGTAATGGGCGGAGACATCGGCGACG
CGAGACTTCACGTTCTAACTGCGGAATCGTACTGCCCGGCCTCAGACCAA
TGGACAGCCATCGCGCCGATGCTCACGGGACAGAGCGAAGCGGGCGTGGC
GGTTATAGACGATAAAATCTTCCTCTTGGGAGGTTACGATTGGAACAATA
GGGACGTGATCGGCAGTTCACAGTCGTACAGGCCGGAGGATAATATATGG
AGACGGGAGGCGAGCCTACCTCAGGCCGCGGCAGGAGTCGCGTGTTGTGT
CGTGAGACTACCGACAAGATACTCCCGTATGGCGGAGGATTGACACTATG
ACATATGGACAGGTACATACAGTCAGCTACTCTCTTTATACACTCCAAGT
ATTGTTTTTGATGGGCTATATGTCTTTGTGTGTCTGTGTGTGTGCGTGTT
TGTCTGTCTGTCTGTGACCATGTGCTCTCGCTACGACGTATGGACAGGCA
CGTGGCTGCGGATGAAGTCCATGCACGAGAAGCGGGCGCACTTCCACCTT
AGCGCGCTAGGGGGCAGGCTTTACGCCGTCGGTGGAAGGAACAAGGAACA
GAACCTCAAGTCTGTGGAGGCCTTCCTTCCGAGGGAGAACAGATGGATGT
ACGTGGCGCCTCTACGCGGGTACAGTACGGGTCACGCAGGGTGCGTCTGC
GACGGGAAGCTCTACACCAGCGGTGGCTACGGGACCTCCATGAACAACGT
GCCCCACGAACGCGTTCTACAGTTCTACGACCCCGAACAGAACGCCTGGC
AGTGCCGTGCGCCCATGACGACCGGGCGCATCTGGCACTGCATGGCGACG
CTCGGAGACAAACTCTACGTAATGGGCGGAGACATCGGCGACGCGAGACT
TCACGTTCTAACTGCGGAATCGTACTGCCCGGCCTCAGACCAATGGACAG
CCATCGCGCCGATGCTCACGGGACAGAGCGAAGCGGGCGTGGCGGTTATA
GACGATAAAATCTTCCTCTTGGGAGGTTACGATTGGAACAATAGGGACGT
GATCGGCAGTTCACAGTCGTACAGGCCGGAGGATAATATATGGAGACGGG
AGGCGAGCCTACCTCAGGCCGCGGCAGGAGTCGCGTGTTGTGTCGTGAGA
CTACCGACAAGATACTCCCGTATGGCGGAGGATTGACACTATGACATATG
GACAGGTACATACAGTCAGCTACTCTCTTTATACACTCCAAGTATTGTTT
TTGATGGGCTATATGTCTTTGTGTGTCTGTGTGTGTGCGTGTTTGTCTGT
CTGTCTGTGACCATGTGCTCTCGCTACGACGTATGGACAGGCACGTGGCT
GCGGATGAAGTCCATGCACGAGAAGCGGGCGCACTTCCACCTTAGCGCGC
TAGGGGGCAGGCTTTACGCCGTCGGTGGAAGGAACAAGGAACAGAACCTC
AAGTCTGTGGAGGCCTTCCTTCCGAGGGAGAACAGATGGATGTACGTGGC
GCCTCTACGCGGGTACAGTACGGGTCACGCAGGGTGCGTCTGCGACGGGA
AGCTCTACACCAGCGGTGGCTACGGGACCTCCATGAACAACGTGCCCCAC
GAACGCGTTCTACAGTTCTACGACCCCGAACAGAACGCCTGGCAGTGCCG
TGCGCCCATGACGACCGGGCGCATCTGGCACTGCATGGCGACGCTCGGAG
ACAAACTCTACGTAATGGGCGGAGACATCGGCGACGCGAGACTTCACGTT
CTAACTGCGGAATCGTACTGCCCGGCCTCAGACCAATGGACAGCCATCGC
GCCGATGCTCACGGGACAGAGCGAAGCGGGCGTGGCGGTTATAGACGATA
AAATCTTCCTCTTGGGAGGTTACGATTGGAACAATAGGGACGTGATCGGC
AGTTCACAGTCGTACAGGCCGGAGGATAATATATGGAGACGGGAGGCGAG
CCTACCTCAGGCCGCGGCAGGAGTCGCGTGTTGTGTCGTGAGACTACCGA
CAAGATACTCCCGTATGGCGGAGGATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000011 | genome | Sc0000011:1514486..1519528 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97480_cuf3 |
| Biotype | protein_coding |
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