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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96938_cuf4 >transcript:BL96938_cuf4-protein ID=transcript:BL96938_cuf4-protein|Name=transcript:BL96938_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=262bp
KNSISLSPPAPLAGEGSCGTPAIPPSLTRVVGGTVSVPGSWPWQISLRYR
GSHTCGGTLIHPDWVLTAAHCVDGRASPEPWTILLGKEHRNAEDPTQQTR
SVTKVIVHESWNSNTVQNDLTLMKLSSPVVLTDQVSPACLPESDTPAGTE
CYTTGWGSTGSGLSEVLLQGKVPIVAPSTCVSYLGASSIDTNTMICAGYD
QGGVDACQGDSGGPLVCQRADGTWELAGVVSWGIGCAQARKPGVYTRVFN
YVDWIGYKMETN Run BLAST on NCBI mRNA from alignment at Sc0000307:276858..279598- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96938_cuf4 ID=transcript:BL96938_cuf4|Name=transcript:BL96938_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=2741bp|location=Sequence derived from alignment at Sc0000307:276858..279598- (Branchiostoma lanceolatum)
GAAAAATTCGATCTCTCTTTCTCCCCCAGCTCCTCTGGCCGGAGAAGGTT
CGTGCGGCACCCCCGCCATCCCGCCGTCTCTGACGCGCGTGGTGGGCGGG
ACCGTGTCGGTGCCCGGCAGCTGGCCCTGGCAGATCTCCCTTCGCTACCG
CGGCTCGCACACGTGCGGCGGCACTCTCATCCACCCGGACTGGGTCCTCA
CCGCCGCGCACTGCGTGGACGGGTACGAACAGTTATTCCGGTTTGGCGAG
TAATGTAAAGACACGTTCGATTACTTTGTAGCATTGTATGTTTCGTCCGT
AAGTATCTCTGCTAAAGAAGGCAAGTAATTAGCTCGCCCCTTAGGCGTCG
CCAAAAACGACTTTTCTACTCTGTGATCGCAGAGGTACCCGCAGGCTAAA
TGGCACGGATAGGCATGCATATTGAATTTGCAGGTTTGACGTGTCATCGT
GATCAATGTTTTCTGATACTTGACATGAAGTAAACTTACTTCCGTCTTGT
TCGGTGCACAAAACAGCTCTTTATAATGGGGTTTTTCTTTCCCCACACCC
CAGGAGAGCAAGCCCCGAGCCATGGACCATCCTCCTCGGGAAAGAACACC
GCAACGCAGAGGACCCCACACAGCAGACCCGCAGTGTGACAAAGGTCATC
GTGCACGAGGTAAACGCCCAAAACGTCATAGTGAAAGACTACCTGCTACA
TGTATGTTTGAGCTACAGTATGTGACTTTTGGCCTTTTTTGTCCATTGCC
CTTCATCTATGATTGATCCAACATCATCCCTGGAAACTGAAGGGACTGTG
AAAATTCCTGAGAACAGAGCAGTCCGACACAAGCTGAAATCACATTTAGT
GAAAACATGGAACAACTGAATTTTTAGCCTGACATTCAAGCCTTCTGTAG
TTGCCGAGATCTATTTGCAAAGAGGCCGAAGACGACCAAGACTCGACAGC
TATAGTAGGTTTGGATACCAGGTCACTGAATNGACAGCTATAGTAGGTTC
GGATACCAGGCCACTGAATTGTATGGTTGCGGACAAGCACGAAGGTCTAT
TAACAAGCCATTTGTTCTTGCCCTGCTCTCCCACCTACCTAACAGAGCTG
GAACAGCAACACCGTCCAGAACGACCTGACGCTGATGAAGCTGAGCTCAC
CTGTCGTGTTGACGGACCAGGTGAGCCCCGCCTGTCTACCTGAGTCGGAC
ACACCTGCCGGGACCGAGTGTTACACCACCGGCTGGGGAAGCACAGGTAA
GTGCATATGCCAGTGTGTCTGTGTGAAAATGATGGAACATTAATTTACTG
ACACTTTTGTTAAAAACGTTTTTACTTGGGGTGGACTTCTCAAGTACAAT
CGTCCCCGGTCCCAGGGAAAAAATACACCGGATTCAAGTCGTAACCTAAT
CGTGAATACATCGACTGGGTTCCCGCCGGGACCCGGTTGATTTTAAGTGC
GAATTAAGATCAACCGGGGGCCCAATTGAGCTCCTTAGATAGCTGGTAGT
CCCACGGGCCCGAAGGCGCAAACAAAACCAACCCGTATCATACCCGGCGG
GGCATCGGTTTTGAAATGTTACTGTAGCATGGCAGTGAAAGTCGCTGTCA
ATGAAAGGACCTAACATACTGCATTGCCACAGGGTCTGGCCTGTCGGAGG
TCCTGCTGCAGGGTAAAGTGCCCATCGTGGCTCCGTCCACCTGTGTGAGT
TACCTGGGCGCCTCCTCCATCGACACCAACACCATGATCTGTGCCGGGTA
CGACCAGGGCGGGGTCGACGCCTGCCAGGTAGACAACACAAGTCTCTATG
TGTATTTCTTAAGCATGAGAACATACTGCGTCTTACTTTTTGGCCTATTC
AAAATTAAATCATAACTTGAAATTTTATAGAACATGATTCATCACCATCA
TCGTGTAATTGCTTGGCCATATTTCTTACTATCTCCTGTTGTCGTCTTAT
TTCTTATCCTATTCAAAATAAATCCTAACTTTAAGCGCATAACAAGTTGA
CAAAACTTCACAAGTTCGACACTAACAACAATGGATCTTGCCGCCTGCCC
AGGGCGACAGCGGCGGCCCCTTGGTGTGCCAGCGTGCCGACGGGACCTGG
GAGCTGGCCGGGGTGGTCAGCTGGGGGATCGGCTGTGCGCAGGCCCGCAA
ACCCGGCGTCTACACACGGGTCTTTAACTACGTGGACTGGATCGGCTACA
AGATGGAGACTAACTAGAGTACAGGAGGCACAGTTCTTAATTCATTCATA
TCAGTTCATTTTAAACCCCTAATAACGGCGCATATGCATATAATCAACGA
AAAGGCCGAACTTTGTCATTCTAGTTACAGTGAAAAAAGTAAAGGTGTGA
AGATGAAAAGATGAAAAATGAAAAATGCAAAGCAGCAGATAGATATGCGA
TAGTCCACAATATTAGACGTGCTTCCTTGAAAAAAAAAGGGCCTATCGTG
TCTGTAATGTTTCAATGTTCTTGTCGAGTGTTCTTTTAGAGAGAGAAGCC
ATAGTTCTTCAGCTGTTGCGTTTGTGCCTTATCTTCAATAAAAAGTGACC
AAGCTAGCACATCACGGTCATAACACGATTAACGTCATTAATCAACCAGC
AGCCTTCCCTGTAAGACAATGAGAATAATGTAATAGTTACTAATAAATGA
GACATAGCTTAGAACGAGATATCGTTGCTTACGCGAAAGGCTTGAAAAAC
ATTGTTAATGGTGACATGTTGCAAATCAGTCGAATAAACAC Coding sequence (CDS) from alignment at Sc0000307:276858..279598- >transcript:BL96938_cuf4 ID=transcript:BL96938_cuf4|Name=transcript:BL96938_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=3945bp|location=Sequence derived from alignment at Sc0000307:276858..279598- (Branchiostoma lanceolatum)
AAAAATTCGATCTCTCTTTCTCCCCCAGCTCCTCTGGCCGGAGAAGGTTC
GTGCGGCACCCCCGCCATCCCGCCGTCTCTGACGCGCGTGGTGGGCGGGA
CCGTGTCGGTGCCCGGCAGCTGGCCCTGGCAGATCTCCCTTCGCTACCGC
GGCTCGCACACGTGCGGCGGCACTCTCATCCACCCGGACTGGGTCCTCAC
CGCCGCGCACTGCGTGGACGGGAGAGCAAGCCCCGAGCCATGGACCATCC
TCCTCGGGAAAGAACACCGCAACGCAGAGGACCCCACACAGCAGACCCGC
AGTGTGACAAAGGTCATCGTGCACGAGAGCTGGAACAGCAACACCGTCCA
GAACGACCTGACGCTGATGAAGCTGAGCTCACCTGTCGTGTTGACGGACC
AGGTGAGCCCCGCCTGTCTACCTGAGTCGGACACACCTGCCGGGACCGAG
TGTTACACCACCGGCTGGGGAAGCACAGGGTCTGGCCTGTCGGAGGTCCT
GCTGCAGGGTAAAGTGCCCATCGTGGCTCCGTCCACCTGTGTGAGTTACC
TGGGCGCCTCCTCCATCGACACCAACACCATGATCTGTGCCGGGTACGAC
CAGGGCGGGGTCGACGCCTGCCAGGGCGACAGCGGCGGCCCCTTGGTGTG
CCAGCGTGCCGACGGGACCTGGGAGCTGGCCGGGGTGGTCAGCTGGGGGA
TCGGCTGTGCGCAGGCCCGCAAACCCGGCGTCTACACACGGGTCTTTAAC
TACGTGGACTGGATCGGCTACAAGATGGAGACTAACTAGAAAAATTCGAT
CTCTCTTTCTCCCCCAGCTCCTCTGGCCGGAGAAGGTTCGTGCGGCACCC
CCGCCATCCCGCCGTCTCTGACGCGCGTGGTGGGCGGGACCGTGTCGGTG
CCCGGCAGCTGGCCCTGGCAGATCTCCCTTCGCTACCGCGGCTCGCACAC
GTGCGGCGGCACTCTCATCCACCCGGACTGGGTCCTCACCGCCGCGCACT
GCGTGGACGGGAGAGCAAGCCCCGAGCCATGGACCATCCTCCTCGGGAAA
GAACACCGCAACGCAGAGGACCCCACACAGCAGACCCGCAGTGTGACAAA
GGTCATCGTGCACGAGAGCTGGAACAGCAACACCGTCCAGAACGACCTGA
CGCTGATGAAGCTGAGCTCACCTGTCGTGTTGACGGACCAGGTGAGCCCC
GCCTGTCTACCTGAGTCGGACACACCTGCCGGGACCGAGTGTTACACCAC
CGGCTGGGGAAGCACAGGGTCTGGCCTGTCGGAGGTCCTGCTGCAGGGTA
AAGTGCCCATCGTGGCTCCGTCCACCTGTGTGAGTTACCTGGGCGCCTCC
TCCATCGACACCAACACCATGATCTGTGCCGGGTACGACCAGGGCGGGGT
CGACGCCTGCCAGGGCGACAGCGGCGGCCCCTTGGTGTGCCAGCGTGCCG
ACGGGACCTGGGAGCTGGCCGGGGTGGTCAGCTGGGGGATCGGCTGTGCG
CAGGCCCGCAAACCCGGCGTCTACACACGGGTCTTTAACTACGTGGACTG
GATCGGCTACAAGATGGAGACTAACTAGAAAAATTCGATCTCTCTTTCTC
CCCCAGCTCCTCTGGCCGGAGAAGGTTCGTGCGGCACCCCCGCCATCCCG
CCGTCTCTGACGCGCGTGGTGGGCGGGACCGTGTCGGTGCCCGGCAGCTG
GCCCTGGCAGATCTCCCTTCGCTACCGCGGCTCGCACACGTGCGGCGGCA
CTCTCATCCACCCGGACTGGGTCCTCACCGCCGCGCACTGCGTGGACGGG
AGAGCAAGCCCCGAGCCATGGACCATCCTCCTCGGGAAAGAACACCGCAA
CGCAGAGGACCCCACACAGCAGACCCGCAGTGTGACAAAGGTCATCGTGC
ACGAGAGCTGGAACAGCAACACCGTCCAGAACGACCTGACGCTGATGAAG
CTGAGCTCACCTGTCGTGTTGACGGACCAGGTGAGCCCCGCCTGTCTACC
TGAGTCGGACACACCTGCCGGGACCGAGTGTTACACCACCGGCTGGGGAA
GCACAGGGTCTGGCCTGTCGGAGGTCCTGCTGCAGGGTAAAGTGCCCATC
GTGGCTCCGTCCACCTGTGTGAGTTACCTGGGCGCCTCCTCCATCGACAC
CAACACCATGATCTGTGCCGGGTACGACCAGGGCGGGGTCGACGCCTGCC
AGGGCGACAGCGGCGGCCCCTTGGTGTGCCAGCGTGCCGACGGGACCTGG
GAGCTGGCCGGGGTGGTCAGCTGGGGGATCGGCTGTGCGCAGGCCCGCAA
ACCCGGCGTCTACACACGGGTCTTTAACTACGTGGACTGGATCGGCTACA
AGATGGAGACTAACTAGAAAAATTCGATCTCTCTTTCTCCCCCAGCTCCT
CTGGCCGGAGAAGGTTCGTGCGGCACCCCCGCCATCCCGCCGTCTCTGAC
GCGCGTGGTGGGCGGGACCGTGTCGGTGCCCGGCAGCTGGCCCTGGCAGA
TCTCCCTTCGCTACCGCGGCTCGCACACGTGCGGCGGCACTCTCATCCAC
CCGGACTGGGTCCTCACCGCCGCGCACTGCGTGGACGGGAGAGCAAGCCC
CGAGCCATGGACCATCCTCCTCGGGAAAGAACACCGCAACGCAGAGGACC
CCACACAGCAGACCCGCAGTGTGACAAAGGTCATCGTGCACGAGAGCTGG
AACAGCAACACCGTCCAGAACGACCTGACGCTGATGAAGCTGAGCTCACC
TGTCGTGTTGACGGACCAGGTGAGCCCCGCCTGTCTACCTGAGTCGGACA
CACCTGCCGGGACCGAGTGTTACACCACCGGCTGGGGAAGCACAGGGTCT
GGCCTGTCGGAGGTCCTGCTGCAGGGTAAAGTGCCCATCGTGGCTCCGTC
CACCTGTGTGAGTTACCTGGGCGCCTCCTCCATCGACACCAACACCATGA
TCTGTGCCGGGTACGACCAGGGCGGGGTCGACGCCTGCCAGGGCGACAGC
GGCGGCCCCTTGGTGTGCCAGCGTGCCGACGGGACCTGGGAGCTGGCCGG
GGTGGTCAGCTGGGGGATCGGCTGTGCGCAGGCCCGCAAACCCGGCGTCT
ACACACGGGTCTTTAACTACGTGGACTGGATCGGCTACAAGATGGAGACT
AACTAGAAAAATTCGATCTCTCTTTCTCCCCCAGCTCCTCTGGCCGGAGA
AGGTTCGTGCGGCACCCCCGCCATCCCGCCGTCTCTGACGCGCGTGGTGG
GCGGGACCGTGTCGGTGCCCGGCAGCTGGCCCTGGCAGATCTCCCTTCGC
TACCGCGGCTCGCACACGTGCGGCGGCACTCTCATCCACCCGGACTGGGT
CCTCACCGCCGCGCACTGCGTGGACGGGAGAGCAAGCCCCGAGCCATGGA
CCATCCTCCTCGGGAAAGAACACCGCAACGCAGAGGACCCCACACAGCAG
ACCCGCAGTGTGACAAAGGTCATCGTGCACGAGAGCTGGAACAGCAACAC
CGTCCAGAACGACCTGACGCTGATGAAGCTGAGCTCACCTGTCGTGTTGA
CGGACCAGGTGAGCCCCGCCTGTCTACCTGAGTCGGACACACCTGCCGGG
ACCGAGTGTTACACCACCGGCTGGGGAAGCACAGGGTCTGGCCTGTCGGA
GGTCCTGCTGCAGGGTAAAGTGCCCATCGTGGCTCCGTCCACCTGTGTGA
GTTACCTGGGCGCCTCCTCCATCGACACCAACACCATGATCTGTGCCGGG
TACGACCAGGGCGGGGTCGACGCCTGCCAGGGCGACAGCGGCGGCCCCTT
GGTGTGCCAGCGTGCCGACGGGACCTGGGAGCTGGCCGGGGTGGTCAGCT
GGGGGATCGGCTGTGCGCAGGCCCGCAAACCCGGCGTCTACACACGGGTC
TTTAACTACGTGGACTGGATCGGCTACAAGATGGAGACTAACTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000307 | genome | Sc0000307:276858..279598 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96938_cuf4 |
| Biotype | protein_coding |
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