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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96863_cuf1 >transcript:BL96863_cuf1-protein ID=transcript:BL96863_cuf1-protein|Name=transcript:BL96863_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=246bp
EMMAVIESGCHDNVSLIVCAACLDRPPCQSHCDDVMAQCDDILEIFNVTR
QCEDLPNEFSLISDCISRGVCPEGQMECWSPLSNRTDPQCVNASLACDGD
WDCPFGEDEDHCEGFCTSWQFQCDLDFLGGGINSSSVSGRIRSSSPECVD
PWQVCDGVRDCSSGADERDCCSPGETECWNPGGNVTCVVLGLVCDGIRDC
LFGEDEDNCTRGNCTEGEIECWSWNGNATCVNSSLACDGNWDCPFG Run BLAST on NCBI mRNA from alignment at Sc0000007:360052..363049+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96863_cuf1 ID=transcript:BL96863_cuf1|Name=transcript:BL96863_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2998bp|location=Sequence derived from alignment at Sc0000007:360052..363049+ (Branchiostoma lanceolatum)
AAGAGATGATGGCGGTGATAGAGAGGTAAGGCGGTTTTGCAACTGACAAT
AAATTTTAAAAAACTATAAGTATTGCAGTTCTGTTGTAAACCGCTAGACT
ACACTCCAACACCTTCAGATCTATGAATAGTTTTAGACATTGCTCTAGCA
AAATACTTTTTTGCATATGCCTGTACTCTGTTTACTTATAGCTTAATTTT
CTGTTTCTAGCCTGTTCTTTACCAATCAAAGGTCAAATCACTTTCTTTCT
CATTTTGCAAGTTATTACGTAATTAATCCTCTCATATACCTCCCTCTCAG
TGGTTGCCATGACAACGTGTCTCTGATCGTCTGCGCCGCCTGCCTGGACC
GTCCGCCCTGTCAGAGCCACTGTGATGACGTCATGGCGCAGTGTGACGAC
ATCCTGGAGATCTTTAACGTCACCAGGCAGTGCGAAGACCTACCTAACGA
GTTCAGCCTCATCAGTGACTGCATCTCACGTATGTTGATTAACAGTTGTT
CGTCTTTACCATGATGTATCGCATTGGTTGCATTTGCTTCTTTTACTTAA
ATGCCGGTTTTATGAACATGTTTTCTGAAGGAATAATGTTCTCATTCATA
AAGCCAAAGAACTCCACAGCTACTTCCCTAAATAGATCCTACTACTCTTT
GCCGTATTCTTGCCGCATAGCCTAAATAGACTTTTTGCCACATGGCTACG
CTATGGCTAAGCAAGAAATCAATTAGTATCTAACATTCTAGTATCTACTG
TTCCGTTATGTACTGCGCACACATTTGGTCTGACGTTATTAGCGTGGGCG
TTATCTCAAAACTTCATGTGGCTTTTAATAGCGCTCTAAAATTACTGCTC
GGTGTGAGCAGGCAGACAAGCACTAGTTGGTTATTTGCAAACAACAGAAT
CGATTCTTTTGATGCCCGACTTCGAAAAGTATCACATTCTTTTGTCTCCC
GTTTGCTTTGTTCTGAGAATAATATCATACAGACACTCGTTCATTCCGAG
TCATTCTACTACAGCACATTCTGGAGTCATCATGTCAACATTGTTTTTTA
AAGATAGTATAAGTTAGTTCTTTCTCCTTTGTATGTTGTATGATATGGGC
CAGGTGCCTGAATTAAAGTTGAAATGAAATGAAAAACAAATTTGATACCT
CCCCCCTAATTTTATAAGGCGGCGTGTGTCCTGAGGGACAGATGGAGTGC
TGGAGCCCCTTGTCGAACCGGACGGACCCGCAGTGCGTGAACGCCAGCCT
GGCCTGCGATGGCGACTGGGACTGTCCTTTCGGAGAGGACGAGGATCACT
GTGGTACGCATTTCTTTAGTAAACGTTAAATATGAGGAGTACCCATATGA
TAACACACACAAACATCGAAACCAGCAAACACACACGCACACATACATGG
ATGCAAACACACACACACAAACACACACACACACACATACACATAAATAC
ATACACGCATACACACGCAAATATGCACACACACACAGACACACACAAAC
ATACATGCATACATGCCTGAGCATCTACAGACTTAGAAAGATAAAGATTC
AAATGCAGATGCAAATGCAGAAACAGACAACTATAGCCCACTTACGGGAT
AAAAGATTGAATGAGAGAAACATAGCTAAAGTTAAAGCTATTGGTCTGTT
TATACATGTTCATCAGCCTTACCGCGACTTTCATCCGTCTTATACTATCT
CAAGGTTCATACTATTATTGTCTTCATGTTGTTTTTAGAGGGTTTCTGCA
CCTCCTGGCAGTTCCAGTGCGACCTGGACTTCCTGGGGGGCGGAATTAAC
AGTTCCAGCGTGTCCGGGCGTATACGTAGCTCAAGTCCGGAGTGTGTCGA
CCCCTGGCAGGTGTGTGACGGAGTCCGGGACTGTTCGTCGGGGGCGGACG
AGAGGGATTGCTGTTCCCCCGGAGAGACGGAATGTTGGAACCCCGGCGGG
AACGTGACCTGTGTGGTCCTAGGACTGGTCTGTGACGGCATCCGGGACTG
CCTCTTCGGGGAGGACGAGGACAACTGCACCAGAGGTACGTTTATGACAG
GTTTGCGTAGCAGAACCTTTGTTGGATCCGTTGGCATGTATGGTGGCTAC
CATCTTGAATTGTGACGTCACAGGGCCGTCATACCATTTTTTGGAGGTGT
GTTTTTGGGGTAGAGTTCTCTCTATTCTTAACAAATCGGCACACAACTAT
CACACATTCAACTCATATAAAAATTCAATACCAATTCAAATTTATGAAAA
GCCCTTTATACCTTAGACCCCGTAATCGCTAAACTAACATAGCAAAGCTG
AAGTATATGTAGCACAAATACTTAACTCTAGTTTTCTTTGTTTGCATCAA
TTTCTTACAGTATTGATGGTGGTGAAATATTACAAATTTTACAGTACTAT
AAGAAGAAGTATCGTCATCGTTAAGATTCTGCAGGGGATAGATTGGTAGA
AGGAATCCATGATGACCAATTGTGACATGATTACTTCCGTTCTCTTTGCT
TGTATTTCTAACAGTCTCAATAAGGATGATATGTATCTCAACAGCTGGGA
GCAAAAAAATCCTAATTCTAATATAGTTTCAAATGTCTATCGGGGTTGAT
TGTCAAATGATATTATCATATAGATAACAGCTCTGCTTTGAATGTGGATG
TGGTTGTGTATATCTCCAGTAGGCTGATCTGATACTTTGCATCATATAGT
TTTCAAAAAAAAATCAAATTCATTGTCGAATGACGTTGATCACCAGGGAA
ATTTACACTTACCGTTTATTTGCAAATTGTCCGAGGGCTAAAAATATTGA
AAGCGAAGTTAATTCATATGGCTCTGATATGGCTGTGATCCATTTTATTC
AGTTTCTACCTCAGAAACAATTGTTTTTGTGTATGTTTTTTCAGGAAACT
GTACGGAAGGAGAGATCGAGTGTTGGAGCTGGAACGGAAACGCGACCTGC
GTGAACTCCAGTCTGGCCTGCGACGGTAACTGGGACTGTCCTTTCGGA Coding sequence (CDS) from alignment at Sc0000007:360052..363049+ >transcript:BL96863_cuf1 ID=transcript:BL96863_cuf1|Name=transcript:BL96863_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3690bp|location=Sequence derived from alignment at Sc0000007:360052..363049+ (Branchiostoma lanceolatum)
GAGATGATGGCGGTGATAGAGAGTGGTTGCCATGACAACGTGTCTCTGAT
CGTCTGCGCCGCCTGCCTGGACCGTCCGCCCTGTCAGAGCCACTGTGATG
ACGTCATGGCGCAGTGTGACGACATCCTGGAGATCTTTAACGTCACCAGG
CAGTGCGAAGACCTACCTAACGAGTTCAGCCTCATCAGTGACTGCATCTC
ACGCGGCGTGTGTCCTGAGGGACAGATGGAGTGCTGGAGCCCCTTGTCGA
ACCGGACGGACCCGCAGTGCGTGAACGCCAGCCTGGCCTGCGATGGCGAC
TGGGACTGTCCTTTCGGAGAGGACGAGGATCACTGTGAGGGTTTCTGCAC
CTCCTGGCAGTTCCAGTGCGACCTGGACTTCCTGGGGGGCGGAATTAACA
GTTCCAGCGTGTCCGGGCGTATACGTAGCTCAAGTCCGGAGTGTGTCGAC
CCCTGGCAGGTGTGTGACGGAGTCCGGGACTGTTCGTCGGGGGCGGACGA
GAGGGATTGCTGTTCCCCCGGAGAGACGGAATGTTGGAACCCCGGCGGGA
ACGTGACCTGTGTGGTCCTAGGACTGGTCTGTGACGGCATCCGGGACTGC
CTCTTCGGGGAGGACGAGGACAACTGCACCAGAGGAAACTGTACGGAAGG
AGAGATCGAGTGTTGGAGCTGGAACGGAAACGCGACCTGCGTGAACTCCA
GTCTGGCCTGCGACGGTAACTGGGACTGTCCTTTCGGAGAGATGATGGCG
GTGATAGAGAGTGGTTGCCATGACAACGTGTCTCTGATCGTCTGCGCCGC
CTGCCTGGACCGTCCGCCCTGTCAGAGCCACTGTGATGACGTCATGGCGC
AGTGTGACGACATCCTGGAGATCTTTAACGTCACCAGGCAGTGCGAAGAC
CTACCTAACGAGTTCAGCCTCATCAGTGACTGCATCTCACGCGGCGTGTG
TCCTGAGGGACAGATGGAGTGCTGGAGCCCCTTGTCGAACCGGACGGACC
CGCAGTGCGTGAACGCCAGCCTGGCCTGCGATGGCGACTGGGACTGTCCT
TTCGGAGAGGACGAGGATCACTGTGAGGGTTTCTGCACCTCCTGGCAGTT
CCAGTGCGACCTGGACTTCCTGGGGGGCGGAATTAACAGTTCCAGCGTGT
CCGGGCGTATACGTAGCTCAAGTCCGGAGTGTGTCGACCCCTGGCAGGTG
TGTGACGGAGTCCGGGACTGTTCGTCGGGGGCGGACGAGAGGGATTGCTG
TTCCCCCGGAGAGACGGAATGTTGGAACCCCGGCGGGAACGTGACCTGTG
TGGTCCTAGGACTGGTCTGTGACGGCATCCGGGACTGCCTCTTCGGGGAG
GACGAGGACAACTGCACCAGAGGAAACTGTACGGAAGGAGAGATCGAGTG
TTGGAGCTGGAACGGAAACGCGACCTGCGTGAACTCCAGTCTGGCCTGCG
ACGGTAACTGGGACTGTCCTTTCGGAGAGATGATGGCGGTGATAGAGAGT
GGTTGCCATGACAACGTGTCTCTGATCGTCTGCGCCGCCTGCCTGGACCG
TCCGCCCTGTCAGAGCCACTGTGATGACGTCATGGCGCAGTGTGACGACA
TCCTGGAGATCTTTAACGTCACCAGGCAGTGCGAAGACCTACCTAACGAG
TTCAGCCTCATCAGTGACTGCATCTCACGCGGCGTGTGTCCTGAGGGACA
GATGGAGTGCTGGAGCCCCTTGTCGAACCGGACGGACCCGCAGTGCGTGA
ACGCCAGCCTGGCCTGCGATGGCGACTGGGACTGTCCTTTCGGAGAGGAC
GAGGATCACTGTGAGGGTTTCTGCACCTCCTGGCAGTTCCAGTGCGACCT
GGACTTCCTGGGGGGCGGAATTAACAGTTCCAGCGTGTCCGGGCGTATAC
GTAGCTCAAGTCCGGAGTGTGTCGACCCCTGGCAGGTGTGTGACGGAGTC
CGGGACTGTTCGTCGGGGGCGGACGAGAGGGATTGCTGTTCCCCCGGAGA
GACGGAATGTTGGAACCCCGGCGGGAACGTGACCTGTGTGGTCCTAGGAC
TGGTCTGTGACGGCATCCGGGACTGCCTCTTCGGGGAGGACGAGGACAAC
TGCACCAGAGGAAACTGTACGGAAGGAGAGATCGAGTGTTGGAGCTGGAA
CGGAAACGCGACCTGCGTGAACTCCAGTCTGGCCTGCGACGGTAACTGGG
ACTGTCCTTTCGGAGAGATGATGGCGGTGATAGAGAGTGGTTGCCATGAC
AACGTGTCTCTGATCGTCTGCGCCGCCTGCCTGGACCGTCCGCCCTGTCA
GAGCCACTGTGATGACGTCATGGCGCAGTGTGACGACATCCTGGAGATCT
TTAACGTCACCAGGCAGTGCGAAGACCTACCTAACGAGTTCAGCCTCATC
AGTGACTGCATCTCACGCGGCGTGTGTCCTGAGGGACAGATGGAGTGCTG
GAGCCCCTTGTCGAACCGGACGGACCCGCAGTGCGTGAACGCCAGCCTGG
CCTGCGATGGCGACTGGGACTGTCCTTTCGGAGAGGACGAGGATCACTGT
GAGGGTTTCTGCACCTCCTGGCAGTTCCAGTGCGACCTGGACTTCCTGGG
GGGCGGAATTAACAGTTCCAGCGTGTCCGGGCGTATACGTAGCTCAAGTC
CGGAGTGTGTCGACCCCTGGCAGGTGTGTGACGGAGTCCGGGACTGTTCG
TCGGGGGCGGACGAGAGGGATTGCTGTTCCCCCGGAGAGACGGAATGTTG
GAACCCCGGCGGGAACGTGACCTGTGTGGTCCTAGGACTGGTCTGTGACG
GCATCCGGGACTGCCTCTTCGGGGAGGACGAGGACAACTGCACCAGAGGA
AACTGTACGGAAGGAGAGATCGAGTGTTGGAGCTGGAACGGAAACGCGAC
CTGCGTGAACTCCAGTCTGGCCTGCGACGGTAACTGGGACTGTCCTTTCG
GAGAGATGATGGCGGTGATAGAGAGTGGTTGCCATGACAACGTGTCTCTG
ATCGTCTGCGCCGCCTGCCTGGACCGTCCGCCCTGTCAGAGCCACTGTGA
TGACGTCATGGCGCAGTGTGACGACATCCTGGAGATCTTTAACGTCACCA
GGCAGTGCGAAGACCTACCTAACGAGTTCAGCCTCATCAGTGACTGCATC
TCACGCGGCGTGTGTCCTGAGGGACAGATGGAGTGCTGGAGCCCCTTGTC
GAACCGGACGGACCCGCAGTGCGTGAACGCCAGCCTGGCCTGCGATGGCG
ACTGGGACTGTCCTTTCGGAGAGGACGAGGATCACTGTGAGGGTTTCTGC
ACCTCCTGGCAGTTCCAGTGCGACCTGGACTTCCTGGGGGGCGGAATTAA
CAGTTCCAGCGTGTCCGGGCGTATACGTAGCTCAAGTCCGGAGTGTGTCG
ACCCCTGGCAGGTGTGTGACGGAGTCCGGGACTGTTCGTCGGGGGCGGAC
GAGAGGGATTGCTGTTCCCCCGGAGAGACGGAATGTTGGAACCCCGGCGG
GAACGTGACCTGTGTGGTCCTAGGACTGGTCTGTGACGGCATCCGGGACT
GCCTCTTCGGGGAGGACGAGGACAACTGCACCAGAGGAAACTGTACGGAA
GGAGAGATCGAGTGTTGGAGCTGGAACGGAAACGCGACCTGCGTGAACTC
CAGTCTGGCCTGCGACGGTAACTGGGACTGTCCTTTCGGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000007 | genome | Sc0000007:360052..363049 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96863_cuf1 |
| Biotype | protein_coding |
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