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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96530_cuf1 >transcript:BL96530_cuf1-protein ID=transcript:BL96530_cuf1-protein|Name=transcript:BL96530_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=183bp
MDQLVSISLSKQAQLVSLTSKGTFQGLSNLQILNLSANQLNDISVGVFDG
MGNLRTLYLNDNSFHKLRSGLFMPLKKLQEISLENNHLKTLTEDVFTKPL
GTRLLMFLKGNEWVCNCAIKWLLSHTAANGLSQTAYCVSPAPFRGKEMNS
HLHAVMKCDKNGQLLQDGSGFEMYDMRLVLVTA Run BLAST on NCBI mRNA from alignment at Sc0000006:3057405..3062082+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96530_cuf1 ID=transcript:BL96530_cuf1|Name=transcript:BL96530_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=4678bp|location=Sequence derived from alignment at Sc0000006:3057405..3062082+ (Branchiostoma lanceolatum)
AATGGACCAGTTGGTGTCGATGTACGTATGTCTTACCTGGCGTTCAAACA
GTTACAGCAGAGAACTGGCAACACTCGAGCATAAACACACACACACACAC
ACACACACACACACACAAACACACACACACACACACACACACACACACAC
ACAAACACAAACACAAACACAAACACAAACACACACATGCTCCCGAAAAC
ATAACCTTCTTGGCAAAGGTAAAAGGCTGCCATCCAGGCTATCAGCTTGC
ATCCTGTCCACCATCACACACACACACACATACACACACACGCACGCAAA
CATATACATATTACATACATAAGAACACTGAAAGAACCTTTTAAGGCGTT
GCAAATGGAAGAGCAGTTTGGAATAGACCTTTCCGCATGTAATGCTACAA
AGACATGTAGCTAGAGTTGCTAAACCTGATCACAAACAGTCGCGTTCTCC
ACCGCCACAACATAGCAACATTGCCTAGTGCTGCAAACAGATGTGTGGCT
TCGGTCACCGTCTGTCTGGGACCGCATTTTGAAGAAGTAGATGATAGTTG
TTGAACTGTTGTTGTTTCTTGACAACTTTGTGTATATAATACACTCCTTT
ACGTTTCGGACCGCATTGAAAACACTGATTTACCTTAAACTATCTCTGTA
TATATGTTAATCATTTACTTTTGGGACCGCACCTGTAAGCAGTGACACCT
ATCGCTGCAGTTTAATGTGAGCCAGTCAGAATTGCCCTGAGGAAGGTGAC
AGACGGTCACCGAAATGTCGATTGGTTGTCTACAAGCAACGAGTCAATTC
ATTCCGAACACTGCAGAAAAACGCTAACCATCTGAAACCGTATATCTGCT
TGAATATCAAATGATTCCCCTTGCTTCCCTCTTAGCTCCCTTTCAAAGCA
GGCACAATTGGTCTCTTTGACATCGAAAGGCACTTTCCAAGGACTGTCCA
ACCTACAGATACTGTAAGTGTCTTTTCCTTCTCCTTTGCCTGATTTTCAT
TTGTTATGCTATCAGTAGTCTTTTGCTTGAGGTTCGACTGGTCTTGGTTT
TGTTATTGCTGCTAATCATTTGGTGGATGTTGGAAATGAAATGTAACGTA
AATATATGTCTTGAATATAAACAATCTTTATTGCATATTTATGCCCAAAG
GGCTAAATGCTCATTTGACCACACGTAGTCTAAAAGATGTAAAATACAAA
GCATGAAAAACTGATTATGAAATACTACATTCTAACGCTGAGCACTCTGT
ATCAAAAACTTTATACTATTATTGATATTCATATTAATATTAATACTATT
ATTCATATTTATATTAATATTTATACTATTGTTATTAATTATTAATTCTT
ATATCTAACAGTTTCTTATCTCTTTAAAAAAAAGAAATGGGAATTCAGGC
ACCGTTCTTCTTTGCACAAAACATACATTTGGCATGGATTTATACCATGA
TTTTCACAAAGGCAAGAATAGACTCGACTATACATAGGGAGCTCTAGGAA
ACAGCACAACAGCTTCAGGTAGAATTACAGTAAAATCTGCACAAAAACTA
ATCCGCTTGCCAGACAATCTGTGGTAAAGAGCCTCCATATATGATTAATT
CCTTTTATGACATTTGACTATGCAACGCCACTGCCCAGTGTGACGTGTCG
CTGTTATTACTTTCCACAGAAATCTGTCTGCAAATCAGCTGAACGACATC
TCCGTCGGCGTGTTTGACGGCATGGGGAACCTGCGTACACTGTAAGTAGC
CTCCACCAGGCCCTCTTACGGGCGTATGAATCGTAGAATTCGGCAGAAAA
AGGAATAATTAGCCAGTAGAGTCAGTCCACAGTGATCACATTTCGCCCGT
AACGGAGCCTGCAAGTGAAACCCTGGCGTAGTTAGTCTGGTAGAGACTAC
ACTGTAAGCACTCCCTCTGTGATTTCTAAAGCCCCCCTCTCACTGGAACC
GCGCGGCACGCTGGCAGCGTCGCTGCGTCCTGAACTGGATTTGTGTTACC
CTTGACTTTATAATGGGAATATTATTAAAACGTATGACCAAAAAGACAAC
AAAGCACACAAAGCTTAAAAAGATTCGTTTTTGTCGATGAAATTCGTTGA
GTGCCTTGTTACTTCGATCGGCCACAGCGACGCCGCCAGCATGCCGCGGG
TCCAGTCAAAGGGAGGACTTCAGATTTTCCGATACACTTATTTGTATGTG
GAAGTGACTTCGAACCAGGTTAACTCACTGAATAGCCTTTTCTTCTGCTG
GTTGTGGCTGAGAAGACAGGCGCTATATACATATTCTTCACCCATCTTTA
TCTTACCCTATCGCATTTAATTTGAAGTCTGCATAGGATGTCATCCATAA
AATTTACATGTTGTAGCCTAACGATGACTGTCCTTTACTGCAGATACCTG
AATGACAACAGTTTCCACAAGCTGAGGTCTGGCCTGTTCATGCCGCTCAA
GAAGCTACAAGAAATGTGAGTCTACATGTATAAGCCATAACGCTTCATTT
GTTCATCATTTGTACGATTTTTTTCTGTTTGTTTGTTTGTTTGTTTGTGT
TTTGGGGTTGGGGTGAAAAGTAATTTCGTAATGCCATATTTTTCTCGCTT
GATCATCCGAACTTGTCTCATTTCTGCTTGGAGTTTCCGTTTCAATAAAA
TTGATCTTTATTGCATGTTCATTCCCCGGGGGGATAAATGCACATAATGC
CATACAAGGGTAATTGGGATAGCAAAGTACATGTAGTGACAATAATACAA
AAAACTAAGCATAATATTGATATGCTACCGTATAACTAAGTTCTAGTGAC
TTCTTCTCTCTTTTAAAAACACATGGCTACATAATTACATACTTAATCCA
TTACATTAACATTTGTGCATGACATCAAGTATTTAAAAGTATCCTGCTTT
GATATTGTTTTACCTCTCTTGTCAAGCTGAGTTGATTTGAACAGAGCCTG
ACGCTCGTTTTCATACAATATACAGTCTAGTAAGAAGTGCATTTCATCTT
CAATACTTAAATCATTATACAATGTCGGCTTTCTGTAACACAATAGATCC
CTGGAGAACAACCACCTGAAGACCCTGACGGAGGACGTCTTCACCAAGCC
GCTCGGAACCCGACTGCTCATGTAAGATGCTTCAAACACAAGCTGACATA
GCAGAAAACATTGTCACTACTTCACGACCAATCGACCGCTTTGAAACTCA
GATTCGAATCAGCCGACACATTACTTCCTAGTTTGCTTTAACGACTTAAT
CTGGCAAAACAAAGTCGCCAGTGAGATGCTAAAAGGTGTCAGATTTTAAA
AGATGTTTTTAGATTGACAATTTGGGCACTTTGGAAATGATAAAAGCTGA
CCGCGATTTAACGTTTAATAAAATAGTTTCTCCTACTTTTCTCCTTGTTT
CCCTAGCTTCCCTCCCTCCTCCTTTTTCATTCGTGTTTTTCCACCAGACA
ACATAAATTCACAATGCCACCTTGTGCCTTCCCAGGTTTCTGAAAGGGAA
CGAATGGGTGTGCAACTGCGCCATCAAGTGGCTGCTGTCGCACACTGCAG
CGAACGGCCTGTCGCAGACGGCCTACTGCGTGTCCCCTGCGCCCTTCCGC
GGGAAGGAGATGAACAGCCACCTCCACGCCGTCATGAAATGCGGTCTGTA
GCTGACTTAATACTGTAAATGCATTTAAGTTCGCGCGGTTTTTATTTCGC
GGTAGGGAGAAAATGGACTGTTCGCAGTGGTTTTAAGTTTGCGCTTGAAA
CAATAGTAGCACTACAGTCATAAGGTGGGGAAAATTTCGCTGTGGTTTTA
AGTTCGCGCTGAAAGTTCACCGCAAAAACCGCGAACATAAAACCACCGCG
AACATTTCTGCATTTGCAGAAGGCTGTTTGTAGGTATGTGGCTTAGCAGC
ATAACACAAGAAGCTATATGGATGTACTATCATGAAATTTAGCATGTGGT
TAGGACTTGTTTTATCAAAGAGACTTGATTTTGGACCCTTGGCGGCTTTC
CTAGGCACTGCAGCAGAACCTTTGGTGTTGTTTTACCTTATTAGGCTGTT
TACGCTCACGTGATTGTGACGTAAGTATTGTCCGCCATGTTGGATGGATA
GACCGGGAAGTTTTTTTGTGAAGTAGATTTGAATTTGTACATGTAGCTGC
AGTCACAAGATCATTACATCATACACCCAGGTTCACAGCTATGACTCTCA
CAGGTTCAACTGTGACATAGCAACCGTGACGTCATGTGGAAATTACCAAT
TTATGATTATTGTTGTTGTTGTTGTTGTTGATATTGATTTTAAATGACAA
TAAAGAATCGACTAACAGTTTTGCCAGGGAAGAAGGATGAGAGATACCTC
TGAACACAACTTAAAGAAAGCAGAGAAAAATCCGTGGCTTTGTTCTTGTG
TATCGTGGTATCGTCTATTGCATATCATGTCTTAAAGTACTATTTGGTTT
GCAAATTTGCAGGTCTAAACAATTAGCTAGGCACTATCTTTGAAGGGAGA
TATTCTACTTTTGTTCGTAAGTGTTGGTTCAGTCTAGCTTTTATTTTGGC
GAAGCTTCAGGAGCACGCCTAAAAGAGTATACTATTTTCTCTTTGACTGC
AGACAAGAATGGACAGCTGCTGCAGGACGGTAGCGGGTTCGAAATGTACG
ACATGCGACTGGTGCTGGTAACTGCAGC Coding sequence (CDS) from alignment at Sc0000006:3057405..3062082+ >transcript:BL96530_cuf1 ID=transcript:BL96530_cuf1|Name=transcript:BL96530_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3843bp|location=Sequence derived from alignment at Sc0000006:3057405..3062082+ (Branchiostoma lanceolatum)
ATGGACCAGTTGGTGTCGATCTCCCTTTCAAAGCAGGCACAATTGGTCTC
TTTGACATCGAAAGGCACTTTCCAAGGACTGTCCAACCTACAGATACTAA
ATCTGTCTGCAAATCAGCTGAACGACATCTCCGTCGGCGTGTTTGACGGC
ATGGGGAACCTGCGTACACTATACCTGAATGACAACAGTTTCCACAAGCT
GAGGTCTGGCCTGTTCATGCCGCTCAAGAAGCTACAAGAAATATCCCTGG
AGAACAACCACCTGAAGACCCTGACGGAGGACGTCTTCACCAAGCCGCTC
GGAACCCGACTGCTCATGTTTCTGAAAGGGAACGAATGGGTGTGCAACTG
CGCCATCAAGTGGCTGCTGTCGCACACTGCAGCGAACGGCCTGTCGCAGA
CGGCCTACTGCGTGTCCCCTGCGCCCTTCCGCGGGAAGGAGATGAACAGC
CACCTCCACGCCGTCATGAAATGCGACAAGAATGGACAGCTGCTGCAGGA
CGGTAGCGGGTTCGAAATGTACGACATGCGACTGGTGCTGGTAACTGCAA
TGGACCAGTTGGTGTCGATCTCCCTTTCAAAGCAGGCACAATTGGTCTCT
TTGACATCGAAAGGCACTTTCCAAGGACTGTCCAACCTACAGATACTAAA
TCTGTCTGCAAATCAGCTGAACGACATCTCCGTCGGCGTGTTTGACGGCA
TGGGGAACCTGCGTACACTATACCTGAATGACAACAGTTTCCACAAGCTG
AGGTCTGGCCTGTTCATGCCGCTCAAGAAGCTACAAGAAATATCCCTGGA
GAACAACCACCTGAAGACCCTGACGGAGGACGTCTTCACCAAGCCGCTCG
GAACCCGACTGCTCATGTTTCTGAAAGGGAACGAATGGGTGTGCAACTGC
GCCATCAAGTGGCTGCTGTCGCACACTGCAGCGAACGGCCTGTCGCAGAC
GGCCTACTGCGTGTCCCCTGCGCCCTTCCGCGGGAAGGAGATGAACAGCC
ACCTCCACGCCGTCATGAAATGCGACAAGAATGGACAGCTGCTGCAGGAC
GGTAGCGGGTTCGAAATGTACGACATGCGACTGGTGCTGGTAACTGCAAT
GGACCAGTTGGTGTCGATCTCCCTTTCAAAGCAGGCACAATTGGTCTCTT
TGACATCGAAAGGCACTTTCCAAGGACTGTCCAACCTACAGATACTAAAT
CTGTCTGCAAATCAGCTGAACGACATCTCCGTCGGCGTGTTTGACGGCAT
GGGGAACCTGCGTACACTATACCTGAATGACAACAGTTTCCACAAGCTGA
GGTCTGGCCTGTTCATGCCGCTCAAGAAGCTACAAGAAATATCCCTGGAG
AACAACCACCTGAAGACCCTGACGGAGGACGTCTTCACCAAGCCGCTCGG
AACCCGACTGCTCATGTTTCTGAAAGGGAACGAATGGGTGTGCAACTGCG
CCATCAAGTGGCTGCTGTCGCACACTGCAGCGAACGGCCTGTCGCAGACG
GCCTACTGCGTGTCCCCTGCGCCCTTCCGCGGGAAGGAGATGAACAGCCA
CCTCCACGCCGTCATGAAATGCGACAAGAATGGACAGCTGCTGCAGGACG
GTAGCGGGTTCGAAATGTACGACATGCGACTGGTGCTGGTAACTGCAATG
GACCAGTTGGTGTCGATCTCCCTTTCAAAGCAGGCACAATTGGTCTCTTT
GACATCGAAAGGCACTTTCCAAGGACTGTCCAACCTACAGATACTAAATC
TGTCTGCAAATCAGCTGAACGACATCTCCGTCGGCGTGTTTGACGGCATG
GGGAACCTGCGTACACTATACCTGAATGACAACAGTTTCCACAAGCTGAG
GTCTGGCCTGTTCATGCCGCTCAAGAAGCTACAAGAAATATCCCTGGAGA
ACAACCACCTGAAGACCCTGACGGAGGACGTCTTCACCAAGCCGCTCGGA
ACCCGACTGCTCATGTTTCTGAAAGGGAACGAATGGGTGTGCAACTGCGC
CATCAAGTGGCTGCTGTCGCACACTGCAGCGAACGGCCTGTCGCAGACGG
CCTACTGCGTGTCCCCTGCGCCCTTCCGCGGGAAGGAGATGAACAGCCAC
CTCCACGCCGTCATGAAATGCGACAAGAATGGACAGCTGCTGCAGGACGG
TAGCGGGTTCGAAATGTACGACATGCGACTGGTGCTGGTAACTGCAATGG
ACCAGTTGGTGTCGATCTCCCTTTCAAAGCAGGCACAATTGGTCTCTTTG
ACATCGAAAGGCACTTTCCAAGGACTGTCCAACCTACAGATACTAAATCT
GTCTGCAAATCAGCTGAACGACATCTCCGTCGGCGTGTTTGACGGCATGG
GGAACCTGCGTACACTATACCTGAATGACAACAGTTTCCACAAGCTGAGG
TCTGGCCTGTTCATGCCGCTCAAGAAGCTACAAGAAATATCCCTGGAGAA
CAACCACCTGAAGACCCTGACGGAGGACGTCTTCACCAAGCCGCTCGGAA
CCCGACTGCTCATGTTTCTGAAAGGGAACGAATGGGTGTGCAACTGCGCC
ATCAAGTGGCTGCTGTCGCACACTGCAGCGAACGGCCTGTCGCAGACGGC
CTACTGCGTGTCCCCTGCGCCCTTCCGCGGGAAGGAGATGAACAGCCACC
TCCACGCCGTCATGAAATGCGACAAGAATGGACAGCTGCTGCAGGACGGT
AGCGGGTTCGAAATGTACGACATGCGACTGGTGCTGGTAACTGCAATGGA
CCAGTTGGTGTCGATCTCCCTTTCAAAGCAGGCACAATTGGTCTCTTTGA
CATCGAAAGGCACTTTCCAAGGACTGTCCAACCTACAGATACTAAATCTG
TCTGCAAATCAGCTGAACGACATCTCCGTCGGCGTGTTTGACGGCATGGG
GAACCTGCGTACACTATACCTGAATGACAACAGTTTCCACAAGCTGAGGT
CTGGCCTGTTCATGCCGCTCAAGAAGCTACAAGAAATATCCCTGGAGAAC
AACCACCTGAAGACCCTGACGGAGGACGTCTTCACCAAGCCGCTCGGAAC
CCGACTGCTCATGTTTCTGAAAGGGAACGAATGGGTGTGCAACTGCGCCA
TCAAGTGGCTGCTGTCGCACACTGCAGCGAACGGCCTGTCGCAGACGGCC
TACTGCGTGTCCCCTGCGCCCTTCCGCGGGAAGGAGATGAACAGCCACCT
CCACGCCGTCATGAAATGCGACAAGAATGGACAGCTGCTGCAGGACGGTA
GCGGGTTCGAAATGTACGACATGCGACTGGTGCTGGTAACTGCAATGGAC
CAGTTGGTGTCGATCTCCCTTTCAAAGCAGGCACAATTGGTCTCTTTGAC
ATCGAAAGGCACTTTCCAAGGACTGTCCAACCTACAGATACTAAATCTGT
CTGCAAATCAGCTGAACGACATCTCCGTCGGCGTGTTTGACGGCATGGGG
AACCTGCGTACACTATACCTGAATGACAACAGTTTCCACAAGCTGAGGTC
TGGCCTGTTCATGCCGCTCAAGAAGCTACAAGAAATATCCCTGGAGAACA
ACCACCTGAAGACCCTGACGGAGGACGTCTTCACCAAGCCGCTCGGAACC
CGACTGCTCATGTTTCTGAAAGGGAACGAATGGGTGTGCAACTGCGCCAT
CAAGTGGCTGCTGTCGCACACTGCAGCGAACGGCCTGTCGCAGACGGCCT
ACTGCGTGTCCCCTGCGCCCTTCCGCGGGAAGGAGATGAACAGCCACCTC
CACGCCGTCATGAAATGCGACAAGAATGGACAGCTGCTGCAGGACGGTAG
CGGGTTCGAAATGTACGACATGCGACTGGTGCTGGTAACTGCA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000006 | genome | Sc0000006:3057405..3062082 + |
Properties
| Property Name | Value |
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| Transcript id | BL96530_cuf1 |
| Biotype | protein_coding |
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