TCONS_00003767 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003767
Unique NameTCONS_00003767
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003767 ID=TCONS_00003767|Name=TCONS_00003767|organism=Clytia hemisphaerica|type=transcript|length=839bp
ccagcTAAGGTTGAAAAGCGGATCAGTTTGTTCTATTTGGCAAATGACGT
TATTCAAAATGGACGCAAGAAAGCAAAAGATTTGGTCACTGCATTTGGTA
AAGCTTTTCTGGATGTCATACATCTTTACagGGAAAGTAAAAACAAGGGT
CAAGTTGAAAGAGTGCTTAGCATCTGGGTTGAGCGTAATGTGTACGAAGC
TGGTTACGTGAACAAGCTCAAAGAACTACTCAACAATGGAGTGGCACCAC
AACCTACCTCACCTGTCAAAACATCTCCATTGAAAGTGCAACAAAAGAGA
AGTTCTGTCTCATCTAATTCAAATGTAGTGCAAAGTAGCACAAAGAAAAG
TGTTCCTGCTAATTTCAAGgtATCAACTCTACTGATGTCCATAAAGAAGT
CGGTCAGTCTTGACAGTGATGCAGAAAGAAAGTCCAAGAAATTGGAAGGG
ATGAGAATAGACGCCACCAGTGTAGATTCTATTAAGAACGTTAAAGATCG
TTCAAGTGTCGGACATTTCCATAAAGAGTTTGATGATTCGAAAATCATGC
TTGAAGATTACATCAACACATTACGTCACAATGTCCAAGAGAAACAAAAG
ATCTTACCTTTGCTGAACAGCAGTGAAGCATTTTATGCTCTGGCTCAAGA
TGAAGCCAAAGTCATCGTCAATGCTTACAAAACGTTTGGCAATCGTTTGA
ATTCGATGAAAAGAAAACTCGATGTCAAAATCTCAAAGCTAGAAGATGAC
GCCAGTCGAACACCTGAAGAACAGACTGATTCTCGTGGTCACAAAATGAG
ATCTTCAAGCGGCGGAAGTATTCAGGATATGGATTTAGG
Run BLAST on NCBI

protein sequence of TCONS_00003767-protein

>TCONS_00003767-protein ID=TCONS_00003767-protein|Name=TCONS_00003767-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
PAKVEKRISLFYLANDVIQNGRKKAKDLVTAFGKAFLDVIHLYRESKNKG
QVERVLSIWVERNVYEAGYVNKLKELLNNGVAPQPTSPVKTSPLKVQQKR
SSVSSNSNVVQSSTKKSVPANFKVSTLLMSIKKSVSLDSDAERKSKKLEG
MRIDATSVDSIKNVKDRSSVGHFHKEFDDSKIMLEDYINTLRHNVQEKQK
ILPLLNSSEAFYALAQDEAKVIVNAYKTFGNRLNSMKRKLDVKISKLEDD
ASRTPEEQTDSRGHKMRSSSGGSIQDMDL
Run BLAST on NCBI

transcript from alignment at sc0000031:853285..856776+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003767 ID=TCONS_00003767|Name=TCONS_00003767|organism=Clytia hemisphaerica|type=transcript|length=3492bp|location=Sequence derived from alignment at sc0000031:853285..856776+ (Clytia hemisphaerica)
ccagcTAAGGTTGAAAAGCGGATCAGTTTGTTCTATTTGGCAAATGACGT
TATTCAAAATGGACGCAAGAAAGCAAAAGATTTGGTCACTGCATTTGGTA
AAGCTTTTCTGGATGTCATACATCTTTACaggtttgttttcaaatttata
atttACATACCTTGCCAGGGTAGTTCATTATCTTGAATCAGAAACCCATT
CTTCCTGGCTAGTATCCCTGCCACTTCATGATTGTTCAGCATGGTGTCCT
CCAGGTTTTCATGACCCCCATCTGTAGGCTAAAACCCCCATTTGGTCTTC
CCCCCACCAACCCTTTGTCCAAGGTTTCAAtcgaaagaatatttttgtga
cCAACCGATTCGCTATATTTTGCATAATAACTTAACAAAATAACGATTTC
CTGCAATGAAAGCTCAAATGCTGGAAACATAGATACATTTAATTAtctat
ttgaaatattataCCTAATCTTTGCACTTTCTACCCCCACTTCCCATAAA
ATTTCGTGAATATCCCCCATTTGGATTAGTCCTCCCATCAAGGTGAAAAT
ATTCACTTTCCCCTCCAGAGCAAAAGTTGATTCCCCCCATCTTTCTGTGA
TCCCATGTTCAGTTCACAAACATCATAAGAGTACTTTTACTTGCtataaa
attaaattgaaatgtaAAACCTACAATCTGATCAATCTGACTCAACTGTT
TTACTATTTTTCATTGTTCTTCATTGTTTCTATAGGGAAAGTAAAAACAA
GGGTCAAGTTGAAAGAGTGCTTAGCATCTGGGTTGAGCGTAATGTGTACG
AAGCTGGTTACGTGAACAAGCTCAAAGAACTACTCAACAATGGAGGTAAA
GTTTAAATAACATGTAATGCAATAAGATAATTGCAAAACAAGGTTACGTT
CAAACTGATTAAGGGTCGCAAGCGCTTGCAATTTTTCATTGCAATTTGTT
CATTATCAAGCGTTTTGGTTTAGGAATTGCAGGCTTTTTTGGTGGGTACA
CAAAATTACCCAATCAGTGTACCCTTAGCGTTACAATGACGTTATTTTCA
GTGTTTAACCATATTCTTACTATGCTTTTAGGGGTGGTTCAGAACCTAGG
GGATGGGGGCTTTCCATGTACCAACCCTTAACTTTGGATCTagttggtct
ttttggatgaaatttggcacacaaggtCCTTAATATGTAAGGTAATATTT
Taaggtaaaaaatttttttgatggcgtcactcatcatgcccaaagtgagc
aaaaacgaaatttcctttgttcttctAAACAGCTATTGTATTTTAACAAC
TACTGTATTATCAATTGATAtcgaaatcattttattttggtaGTGGCACC
ACAACCTACCTCACCTGTCAAAACATCTCCATTGAAAGTGCAACAAAAGA
GAAGTTCTGTCTCATCTAATTCAAATGTAGTGCAAAGTAGCACAAAGAAA
AGTGTTCCTGCTAATTTCAAGGTAACtgtcaattttattttgtgTGATCT
TgtatgattttatgattttagttAAAGTGTTATCCAAAGaataaatttct
tcaaaagcgaaatttaagaaaaatatgttCCTCTGTAATCTTTCAATGTT
TTTTCTCTCTAAGCTCAGTTACAATTCGGTTTCAAAATTTGGCAAACATC
AATCTCAATAGATCTGCTTGTTTCAAATATATTCTTGTTCGATTGCAAAC
ACTTTCAAACTAGCCTTTTGATGTCAATGCTCGTATGTTCCGTGCTCATG
TTTCTATTCTATCCGAAACTAAATGAAGCCTATATGGTTATAAGTNGCTC
ATGTTCCTATTCTCTCCGAAACTAAATGAAGCCTATATTGTTATAAGGGA
CGTAAGTGAATTTTACCAATTGAATGGCTTCTTTTGAAAGGGAACCGTAG
CATTTGATCATGGtcttaatttttggaacaatttgtttgttttaggtATC
AACTCTACTGATGTCCATAAAGAAGTCGGTCAGTCTTGACAGTGATGCAG
AAAGAAAGTCCAAGAAATTGGAAGGGATGAGAATAGACGCCACCAGTGTA
GATTCTATTAAGAACGTTAAAGGTGAGCCAAACTGGAAAACTAATGTAAT
AGCTTTGATCTCAAGTCACTCTCATTTAATATAAAATTCACaataacaaa
aaatgaaatagaaatggTCTCCATAAAGCAGCTTGAACCTGTGCGAATAT
CTTCAGTCCCATTTTGCCAGTTTTTGACCTCGATTGGATGAATGCACTTC
TCCTTTGATATGAGGCAATAAATTTTCGAAACAACTTTCTTGGTCTTGCA
TGAGAGAGGAGAtcattgttttcaattaaagcTAGTATCTATTCATGAGT
CTTTTGCTTATTCTGCAAAAATATTCCACAGCTCCATTGAAAACGCAgac
aattcattccaattcttaTTTGACACTTTGCAGTCAAAACATTGTAAACT
CTCTGatcattaaaatgtttattaaagtgaagacattgcagtgttgAATC
GAACAATTAAGTTACGTCACGCGCTATCTTTTGTTTTCATGATTGGTTGA
ATAACTGCAATCTCTATGAAGCTCAGCGTTTTTGaagcagcgattcagac
ctcggaaaatataatgtcaatctggctttaaCTTTAATTTGGTGTTTAGA
TCGTTCAAGTGTCGGACATTTCCATAAAGAGTTTGATGATTCGAAAATCA
TGCTTGAAGATTACATCAACACATTACGTCACAATGTCCAAGAGAAACAA
AAGATCTTACCTTTGCTGAACAGCAGTGAAGCATTTTATGCTCTGGCTCA
AGATGAAGCCAAAGTCATCGTCAATGTAAGATTCTACTGATTGTCTCAGA
TTTTTTATACAAGACGGAAAAGTTTTCATATCATCCCGATCTCTTTAACT
AGCCAACCCTTGCCCTTGTTTATCAAAGATTATGAAAAAGCTCTATTGTC
TTTACCATTCACATGgttgctttcattttcattgctttCAATCATTCCTT
TGTTTTCCTGATAGTGGTGTAGTTGTATTTTGAAATGATGATCTTTCAAA
AGTGCTGGTTTCATTTACAACCAAATCATCCAGTTGATTTCAGCTAGACG
GATAGTATTGGCACTACTTGATCAAGATCACTTGTATTTTCTTTGGCACA
TAAGTTCAAGATGGGGTAACCCTATGTCAGTgttgtgacctttttcaggT
TGAGGTTGGAGGGGTGATCCCGCTATTCTTTGAGAGTTTAAGATACATCT
TCATATGGTTCAAGATTGTGCATTACGTTGATGTACAAAAAATTCACTGT
TATTTCATGTCATTTCTCCATCCAGGCTTACAAAACGTTTGGCAATCGTT
TGAATTCGATGAAAAGAAAACTCGATGTCAAAATCTCAAAGCTAGAAGAT
GACGCCAGTCGAACACCTGAAGAACAGACTGATTCTCGTGGTCACAAAAT
GAGATCTTCAAGCGGCGGAAGTATTCAGGATATGGATTTAGG

Coding sequence (CDS) from alignment at sc0000031:853285..856776+

>TCONS_00003767 ID=TCONS_00003767|Name=TCONS_00003767|organism=Clytia hemisphaerica|type=CDS|length=5022bp|location=Sequence derived from alignment at sc0000031:853285..856776+ (Clytia hemisphaerica)
ccagcTAAGGTTGAAAAGCGGATCAGTTTGTTCTATTTGGCAAATGACGT
TATTCAAAATGGACGCAAGAAAGCAAAAGATTTGGTCACTGCATTTGGTA
AAGCTTTTCTGGATGTCATACATCTTTACagGGAAAGTAAAAACAAGGGT
CAAGTTGAAAGAGTGCTTAGCATCTGGGTTGAGCGTAATGTGTACGAAGC
TGGTTACGTGAACAAGCTCAAAGAACTACTCAACAATGGAGTGGCACCAC
AACCTACCTCACCTGTCAAAACATCTCCATTGAAAGTGCAACAAAAGAGA
AGTTCTGTCTCATCTAATTCAAATGTAGTGCAAAGTAGCACAAAGAAAAG
TGTTCCTGCTAATTTCAAGgtATCAACTCTACTGATGTCCATAAAGAAGT
CGGTCAGTCTTGACAGTGATGCAGAAAGAAAGTCCAAGAAATTGGAAGGG
ATGAGAATAGACGCCACCAGTGTAGATTCTATTAAGAACGTTAAAGATCG
TTCAAGTGTCGGACATTTCCATAAAGAGTTTGATGATTCGAAAATCATGC
TTGAAGATTACATCAACACATTACGTCACAATGTCCAAGAGAAACAAAAG
ATCTTACCTTTGCTGAACAGCAGTGAAGCATTTTATGCTCTGGCTCAAGA
TGAAGCCAAAGTCATCGTCAATGCTTACAAAACGTTTGGCAATCGTTTGA
ATTCGATGAAAAGAAAACTCGATGTCAAAATCTCAAAGCTAGAAGATGAC
GCCAGTCGAACACCTGAAGAACAGACTGATTCTCGTGGTCACAAAATGAG
ATCTTCAAGCGGCGGAAGTATTCAGGATATGGATTTAccagcTAAGGTTG
AAAAGCGGATCAGTTTGTTCTATTTGGCAAATGACGTTATTCAAAATGGA
CGCAAGAAAGCAAAAGATTTGGTCACTGCATTTGGTAAAGCTTTTCTGGA
TGTCATACATCTTTACagGGAAAGTAAAAACAAGGGTCAAGTTGAAAGAG
TGCTTAGCATCTGGGTTGAGCGTAATGTGTACGAAGCTGGTTACGTGAAC
AAGCTCAAAGAACTACTCAACAATGGAGTGGCACCACAACCTACCTCACC
TGTCAAAACATCTCCATTGAAAGTGCAACAAAAGAGAAGTTCTGTCTCAT
CTAATTCAAATGTAGTGCAAAGTAGCACAAAGAAAAGTGTTCCTGCTAAT
TTCAAGgtATCAACTCTACTGATGTCCATAAAGAAGTCGGTCAGTCTTGA
CAGTGATGCAGAAAGAAAGTCCAAGAAATTGGAAGGGATGAGAATAGACG
CCACCAGTGTAGATTCTATTAAGAACGTTAAAGATCGTTCAAGTGTCGGA
CATTTCCATAAAGAGTTTGATGATTCGAAAATCATGCTTGAAGATTACAT
CAACACATTACGTCACAATGTCCAAGAGAAACAAAAGATCTTACCTTTGC
TGAACAGCAGTGAAGCATTTTATGCTCTGGCTCAAGATGAAGCCAAAGTC
ATCGTCAATGCTTACAAAACGTTTGGCAATCGTTTGAATTCGATGAAAAG
AAAACTCGATGTCAAAATCTCAAAGCTAGAAGATGACGCCAGTCGAACAC
CTGAAGAACAGACTGATTCTCGTGGTCACAAAATGAGATCTTCAAGCGGC
GGAAGTATTCAGGATATGGATTTAccagcTAAGGTTGAAAAGCGGATCAG
TTTGTTCTATTTGGCAAATGACGTTATTCAAAATGGACGCAAGAAAGCAA
AAGATTTGGTCACTGCATTTGGTAAAGCTTTTCTGGATGTCATACATCTT
TACagGGAAAGTAAAAACAAGGGTCAAGTTGAAAGAGTGCTTAGCATCTG
GGTTGAGCGTAATGTGTACGAAGCTGGTTACGTGAACAAGCTCAAAGAAC
TACTCAACAATGGAGTGGCACCACAACCTACCTCACCTGTCAAAACATCT
CCATTGAAAGTGCAACAAAAGAGAAGTTCTGTCTCATCTAATTCAAATGT
AGTGCAAAGTAGCACAAAGAAAAGTGTTCCTGCTAATTTCAAGgtATCAA
CTCTACTGATGTCCATAAAGAAGTCGGTCAGTCTTGACAGTGATGCAGAA
AGAAAGTCCAAGAAATTGGAAGGGATGAGAATAGACGCCACCAGTGTAGA
TTCTATTAAGAACGTTAAAGATCGTTCAAGTGTCGGACATTTCCATAAAG
AGTTTGATGATTCGAAAATCATGCTTGAAGATTACATCAACACATTACGT
CACAATGTCCAAGAGAAACAAAAGATCTTACCTTTGCTGAACAGCAGTGA
AGCATTTTATGCTCTGGCTCAAGATGAAGCCAAAGTCATCGTCAATGCTT
ACAAAACGTTTGGCAATCGTTTGAATTCGATGAAAAGAAAACTCGATGTC
AAAATCTCAAAGCTAGAAGATGACGCCAGTCGAACACCTGAAGAACAGAC
TGATTCTCGTGGTCACAAAATGAGATCTTCAAGCGGCGGAAGTATTCAGG
ATATGGATTTAccagcTAAGGTTGAAAAGCGGATCAGTTTGTTCTATTTG
GCAAATGACGTTATTCAAAATGGACGCAAGAAAGCAAAAGATTTGGTCAC
TGCATTTGGTAAAGCTTTTCTGGATGTCATACATCTTTACagGGAAAGTA
AAAACAAGGGTCAAGTTGAAAGAGTGCTTAGCATCTGGGTTGAGCGTAAT
GTGTACGAAGCTGGTTACGTGAACAAGCTCAAAGAACTACTCAACAATGG
AGTGGCACCACAACCTACCTCACCTGTCAAAACATCTCCATTGAAAGTGC
AACAAAAGAGAAGTTCTGTCTCATCTAATTCAAATGTAGTGCAAAGTAGC
ACAAAGAAAAGTGTTCCTGCTAATTTCAAGgtATCAACTCTACTGATGTC
CATAAAGAAGTCGGTCAGTCTTGACAGTGATGCAGAAAGAAAGTCCAAGA
AATTGGAAGGGATGAGAATAGACGCCACCAGTGTAGATTCTATTAAGAAC
GTTAAAGATCGTTCAAGTGTCGGACATTTCCATAAAGAGTTTGATGATTC
GAAAATCATGCTTGAAGATTACATCAACACATTACGTCACAATGTCCAAG
AGAAACAAAAGATCTTACCTTTGCTGAACAGCAGTGAAGCATTTTATGCT
CTGGCTCAAGATGAAGCCAAAGTCATCGTCAATGCTTACAAAACGTTTGG
CAATCGTTTGAATTCGATGAAAAGAAAACTCGATGTCAAAATCTCAAAGC
TAGAAGATGACGCCAGTCGAACACCTGAAGAACAGACTGATTCTCGTGGT
CACAAAATGAGATCTTCAAGCGGCGGAAGTATTCAGGATATGGATTTAcc
agcTAAGGTTGAAAAGCGGATCAGTTTGTTCTATTTGGCAAATGACGTTA
TTCAAAATGGACGCAAGAAAGCAAAAGATTTGGTCACTGCATTTGGTAAA
GCTTTTCTGGATGTCATACATCTTTACagGGAAAGTAAAAACAAGGGTCA
AGTTGAAAGAGTGCTTAGCATCTGGGTTGAGCGTAATGTGTACGAAGCTG
GTTACGTGAACAAGCTCAAAGAACTACTCAACAATGGAGTGGCACCACAA
CCTACCTCACCTGTCAAAACATCTCCATTGAAAGTGCAACAAAAGAGAAG
TTCTGTCTCATCTAATTCAAATGTAGTGCAAAGTAGCACAAAGAAAAGTG
TTCCTGCTAATTTCAAGgtATCAACTCTACTGATGTCCATAAAGAAGTCG
GTCAGTCTTGACAGTGATGCAGAAAGAAAGTCCAAGAAATTGGAAGGGAT
GAGAATAGACGCCACCAGTGTAGATTCTATTAAGAACGTTAAAGATCGTT
CAAGTGTCGGACATTTCCATAAAGAGTTTGATGATTCGAAAATCATGCTT
GAAGATTACATCAACACATTACGTCACAATGTCCAAGAGAAACAAAAGAT
CTTACCTTTGCTGAACAGCAGTGAAGCATTTTATGCTCTGGCTCAAGATG
AAGCCAAAGTCATCGTCAATGCTTACAAAACGTTTGGCAATCGTTTGAAT
TCGATGAAAAGAAAACTCGATGTCAAAATCTCAAAGCTAGAAGATGACGC
CAGTCGAACACCTGAAGAACAGACTGATTCTCGTGGTCACAAAATGAGAT
CTTCAAGCGGCGGAAGTATTCAGGATATGGATTTAccagcTAAGGTTGAA
AAGCGGATCAGTTTGTTCTATTTGGCAAATGACGTTATTCAAAATGGACG
CAAGAAAGCAAAAGATTTGGTCACTGCATTTGGTAAAGCTTTTCTGGATG
TCATACATCTTTACagGGAAAGTAAAAACAAGGGTCAAGTTGAAAGAGTG
CTTAGCATCTGGGTTGAGCGTAATGTGTACGAAGCTGGTTACGTGAACAA
GCTCAAAGAACTACTCAACAATGGAGTGGCACCACAACCTACCTCACCTG
TCAAAACATCTCCATTGAAAGTGCAACAAAAGAGAAGTTCTGTCTCATCT
AATTCAAATGTAGTGCAAAGTAGCACAAAGAAAAGTGTTCCTGCTAATTT
CAAGgtATCAACTCTACTGATGTCCATAAAGAAGTCGGTCAGTCTTGACA
GTGATGCAGAAAGAAAGTCCAAGAAATTGGAAGGGATGAGAATAGACGCC
ACCAGTGTAGATTCTATTAAGAACGTTAAAGATCGTTCAAGTGTCGGACA
TTTCCATAAAGAGTTTGATGATTCGAAAATCATGCTTGAAGATTACATCA
ACACATTACGTCACAATGTCCAAGAGAAACAAAAGATCTTACCTTTGCTG
AACAGCAGTGAAGCATTTTATGCTCTGGCTCAAGATGAAGCCAAAGTCAT
CGTCAATGCTTACAAAACGTTTGGCAATCGTTTGAATTCGATGAAAAGAA
AACTCGATGTCAAAATCTCAAAGCTAGAAGATGACGCCAGTCGAACACCT
GAAGAACAGACTGATTCTCGTGGTCACAAAATGAGATCTTCAAGCGGCGG
AAGTATTCAGGATATGGATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002101XLOC_002101Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003767-proteinTCONS_00003767-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003767-exon-sc0000031-1491911889:853285..853415TCONS_00003767-exon-sc0000031-1491911889:853285..853415Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1510915933:853285..853415TCONS_00003767-exon-sc0000031-1510915933:853285..853415Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1575043694:853285..853415TCONS_00003767-exon-sc0000031-1575043694:853285..853415Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1491911889:854020..854129TCONS_00003767-exon-sc0000031-1491911889:854020..854129Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1510915933:854020..854129TCONS_00003767-exon-sc0000031-1510915933:854020..854129Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1575043694:854020..854129TCONS_00003767-exon-sc0000031-1575043694:854020..854129Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1491911889:854628..854755TCONS_00003767-exon-sc0000031-1491911889:854628..854755Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1510915933:854628..854755TCONS_00003767-exon-sc0000031-1510915933:854628..854755Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1575043694:854628..854755TCONS_00003767-exon-sc0000031-1575043694:854628..854755Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1491911889:855230..855356TCONS_00003767-exon-sc0000031-1491911889:855230..855356Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1510915933:855230..855356TCONS_00003767-exon-sc0000031-1510915933:855230..855356Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1575043694:855230..855356TCONS_00003767-exon-sc0000031-1575043694:855230..855356Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1491911889:855934..856109TCONS_00003767-exon-sc0000031-1491911889:855934..856109Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1510915933:855934..856109TCONS_00003767-exon-sc0000031-1510915933:855934..856109Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1575043694:855934..856109TCONS_00003767-exon-sc0000031-1575043694:855934..856109Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1491911889:856610..856776TCONS_00003767-exon-sc0000031-1491911889:856610..856776Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1510915933:856610..856776TCONS_00003767-exon-sc0000031-1510915933:856610..856776Clytia hemisphaericaexon
TCONS_00003767-exon-sc0000031-1575043694:856610..856776TCONS_00003767-exon-sc0000031-1575043694:856610..856776Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:853285..856776 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.2628	9.44536	5.80229	6.23806	52.3243	40.8673	22.9509	27.2477	9.87056	15.6355	11.6389	8.51357	6.06732	5.91202	8.1541	13.246	14.627	11.4825	3.2326	2.75626	7.94933	8.4453	24.084	23.6569	21.4639	19.9654	3.32035	2.55467	24.064	34.1334
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006903RNA_pol_II-bd
IPR008942ENTH_VHS
IPR006569CID_dom
Blast
[Close]
BLAST of TCONS_00003767 vs. Swiss-Prot (Human)
Match: RPRD2 (Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo sapiens GN=RPRD2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.859e-27
Identity = 85/255 (33.33%), Postives = 134/255 (52.55%), Query Frame = 1 
Query:   19 RISLFYLANDVIQNGRKKAKDLVTAFGKAFLDVIH----LYRESKNKGQVERVLSIWVERNVYEAGYVNKLKELLNNGVAPQPTSPVKTSPLXXXXXXXXXXXXXXXXXXXXXXXXPANFKVSTLLMSIKKSVSLDSDAERKSKKLEGMRIDATSVDSIKNVKDRSSVGHFHKEFDDSKIMLEDYINTLRHNVQEKQKILPLLNSSEAFYALAQDEAKVIVNAYKTFGNRLNSMKRKLDVKISKLEDDASRTPEE 771
            R++LFYLANDVIQN ++K   +   F ++F DV+     L ++      VER+  IW +RNVY    +  L+E L+     Q    +K +  K   K+   S  S   +++ K  + A F+   L+  +      +   E K K+L  MR+D  S +++K +KD++    F KEF+++   LE+++N L   V+    +   L ++  FY     E KV+ NAYKTF NR+N++K+KLD   S L D     PEE
Sbjct:   74 RLNLFYLANDVIQNCKRKNAII---FRESFADVLPEAAALVKDPSVSKSVERIFKIWEDRNVYPEEMIVALREALSTTFKTQKQ--LKENLNKQPNKQWKKSQTSTNPKAALKSKIVAEFRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPD-----PEE 318
The following BLAST results are available for this feature:
BLAST of TCONS_00003767 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPRD24.859e-2733.33Regulation of nuclear pre-mRNA domain-containing p... [more]
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