|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043602 ID=TCONS_00043602|Name=TCONS_00043602|organism=Clytia hemisphaerica|type=transcript|length=1577bp
CACGGAAtcacaaaattgaaaaagcGCCAATCACGCCACGAAAACCGCTT
CGGTCCTCTTATATAGGAAAAGCGTAAAAGATAGGATTTCACAGGTGAAT
ACAAGTCGAAAAATGGCCTATTTTCTGGCAATTCTCACTTTTTAATAAAC
ATATTCTTTCTTCAAAGctcaaaaagattaaaaaagaaaacattataTTA
CAAACAGACAAAATTTatacaaaaaacaaactaacaaaaatgtcaaactg
aaaatataaccagcaaacaatctattataaaaagataatgGAATATAGAA
ATGCAGTGTGACCCAAAAAAATACGAGCAGAATTTATGAAGTGTAAGTAG
AATCAATAGCATCGATCAGTTAGCTTTCTGAGTTTTGGAATATTACATCA
ATAAGatggaaattttcttcaaaggaTATGCAATCCCAAAGGTGATTAAA
TAGAACGATAACGATAGGTGTTGTAAATAATAGCCGACATtataaaagat
ttttcctcAAATAAATTATGCTCCGAATCTTTCTCGGACACCTCAACATA
AACTAGTAGGCTAAACAAGATGAGTAAGACCTAGGTCGATCAACTACATA
TACCAATTAACAACTAGGGACAGTCCATTGAGCAGACTTTCCAGCCACAG
CTTTACCAGTAGTTGGGTTGACACACCAGCACATTCCATTTCTACACTGG
ACCTTTTGATAGTCACCTGAAGGAGCACATCGTGGAATTCGAACACCGAG
AAGTCCATAACTTGCCATCTTCCATCCCTTATGTCTTGCTAATACACATT
CTAAAAAGGTtgtaaaaagaaagattttcttctAAAAGCCTGTCTTCACT
TTCACGcgaaatgagaaaaaacatttttaacgtttttgtaaggtcattgg
tcggcaATTCCATTGGGCAAATCTGATGGGAcggtttaaaaaagttgaac
ttcttttaatcttttattttttcactcgaaactttttttaatgacgtaat
cttttctgcTCTTGTAACTTAGGACATGTTTAGCGCAAAAAATCTAGGGA
CCTTAGGCATGATCATTGATACGTCAAAAGAAGGGTAAAGATAAGTGGAT
CTGGGATCAATCAAAAGGATAgcaaattttgcttttttcctGTTGAAAAA
TTGAGCGTTCCAGACGTCGACTGAGATCAAGTTTGATGTAAGTTTTAGTT
TATTATAGTATAGTTTTGATTAGGACTATTACACCACTGTCTCACATCCC
CGGTCGAACTTTTCCCACAGCGGGatataaaaattctaatttttgttttt
ttgtgcattttttgaTNTTCCCACAGCGGGatataaaaattctaattttt
ggttttttgtgcattttttgattggggctgaaattgtagattatttttcc
caccggggaccatattttgaccaaattttccgGAGTGGGGATCCCACCGG
CTTTGTGACACAGATTCGACATATATTGTTCAGGCTTACAGATTACAGCT
GTCTCCAAAACAAGTTTATTGTTAGAGGTTTTGAGTACAGATAAGGTCAT
TTTCTTTTGTCAACCTTCATATCATTA Run BLAST on NCBI protein sequence of TCONS_00043602-protein >TCONS_00043602-protein ID=TCONS_00043602-protein|Name=TCONS_00043602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MTLSVLKTSNNKLVLETAVICKPEQYMSNLCHKAGGIPTPENLVKIWSPV
GKIIYNFSPNQKMHKKPKIRIFISRCGXIKKCTKKQKLEFLYPAVGKVRP
GM Run BLAST on NCBI transcript from alignment at sc0004383:1746..3322 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043602 ID=TCONS_00043602|Name=TCONS_00043602|organism=Clytia hemisphaerica|type=transcript|length=1577bp|location=Sequence derived from alignment at sc0004383:1746..3322 (Clytia hemisphaerica)
TAATGATATGAAGGTTGACAAAAGAAAATGACCTTATCTGTACTCAAAAC
CTCTAACAATAAACTTGTTTTGGAGACAGCTGTAATCTGTAAGCCTGAAC
AATATATGTCGAATCTGTGTCACAAAGCCGGTGGGATCCCCACTCcggaa
aatttggtcaaaatatggtccccggtgggaaaaataatctacaatttcag
ccccaatcaaaaaatgcacaaaaaaccaaaaattagaatttttatatCCC
GCTGTGGGAANAtcaaaaaatgcacaaaaaaacaaaaattagaattttta
tatCCCGCTGTGGGAAAAGTTCGACCGGGGATGTGAGACAGTGGTGTAAT
AGTCCTAATCAAAACTATACTATAATAAACTAAAACTTACATCAAACTTG
ATCTCAGTCGACGTCTGGAACGCTCAATTTTTCAACaggaaaaaagcaaa
atttgcTATCCTTTTGATTGATCCCAGATCCACTTATCTTTACCCTTCTT
TTGACGTATCAATGATCATGCCTAAGGTCCCTAGATTTTTTGCGCTAAAC
ATGTCCTAAGTTACAAGAgcagaaaagattacgtcattaaaaaaagtttc
gagtgaaaaaataaaagattaaaagaagttcaacttttttaaaccgTCCC
ATCAGATTTGCCCAATGGAATtgccgaccaatgaccttacaaaaacgtta
aaaatgttttttctcatttcgCGTGAAAGTGAAGACAGGCTTTTagaaga
aaatctttctttttacaACCTTTTTAGAATGTGTATTAGCAAGACATAAG
GGATGGAAGATGGCAAGTTATGGACTTCTCGGTGTTCGAATTCCACGATG
TGCTCCTTCAGGTGACTATCAAAAGGTCCAGTGTAGAAATGGAATGTGCT
GGTGTGTCAACCCAACTACTGGTAAAGCTGTGGCTGGAAAGTCTGCTCAA
TGGACTGTCCCTAGTTGTTAATTGGTATATGTAGTTGATCGACCTAGGTC
TTACTCATCTTGTTTAGCCTACTAGTTTATGTTGAGGTGTCCGAGAAAGA
TTCGGAGCATAATTTATTTgaggaaaaatcttttataATGTCGGCTATTA
TTTACAACACCTATCGTTATCGTTCTATTTAATCACCTTTGGGATTGCAT
AtcctttgaagaaaatttccatCTTATTGATGTAATATTCCAAAACTCAG
AAAGCTAACTGATCGATGCTATTGATTCTACTTACACTTCATAAATTCTG
CTCGTATTTTTTTGGGTCACACTGCATTTCTATATTCcattatcttttta
taatagattgtttgctggttatattttcagtttgacatttttgttagttt
gttttttgtatAAATTTTGTCTGTTTGTAAtataatgttttcttttttaa
tctttttgagCTTTGAAGAAAGAATATGTTTATTAAAAAGTGAGAATTGC
CAGAAAATAGGCCATTTTTCGACTTGTATTCACCTGTGAAATCCTATCTT
TTACGCTTTTCCTATATAAGAGGACCGAAGCGGTTTTCGTGGCGTGATTG
GCgctttttcaattttgtgaTTCCGTG Coding sequence (CDS) from alignment at sc0004383:1746..3322 >TCONS_00043602 ID=TCONS_00043602|Name=TCONS_00043602|organism=Clytia hemisphaerica|type=CDS|length=309bp|location=Sequence derived from alignment at sc0004383:1746..3322 (Clytia hemisphaerica)
ATGACCTTATCTGTACTCAAAACCTCTAACAATAAACTTGTTTTGGAGAC
AGCTGTAATCTGTAAGCCTGAACAATATATGTCGAATCTGTGTCACAAAG
CCGGTGGGATCCCCACTCcggaaaatttggtcaaaatatggtccccggtg
ggaaaaataatctacaatttcagccccaatcaaaaaatgcacaaaaaacc
aaaaattagaatttttatatCCCGCTGTGGGAANAtcaaaaaatgcacaa
aaaaacaaaaattagaatttttatatCCCGCTGTGGGAAAAGTTCGACCG
GGGATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043602-exon-sc0004383-1491911889:1746..3322 | TCONS_00043602-exon-sc0004383-1491911889:1746..3322 | Clytia hemisphaerica | exon |
| TCONS_00043602-exon-sc0004383-1510915933:1746..3322 | TCONS_00043602-exon-sc0004383-1510915933:1746..3322 | Clytia hemisphaerica | exon |
| TCONS_00043602-exon-sc0004383-1575043694:1746..3322 | TCONS_00043602-exon-sc0004383-1575043694:1746..3322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004383 | supercontig | sc0004383:1746..3322 . |
Blast
The following BLAST results are available for this feature:
|
