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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97204_cuf11 >transcript:BL97204_cuf11-protein ID=transcript:BL97204_cuf11-protein|Name=transcript:BL97204_cuf11|organism=Branchiostoma lanceolatum|type=polypeptide|length=329bp
RKSCHTGIGKTSGWIIPTGWLVDQDFVHTDGQTSLVQAVGHFFSQSCVPG
AKSPEYDPQNTNPSNLCSLCAGAGEDHCVRNKNEPYYGYAGAFRCLAEGS
GDVAFINHLTVQDNTDGHNPENWAAGLRSNEFELLCTDGSRRPVDQWREC
SLARVPSHAVMTSNDRNQEWVDRAVQLLKNTQDMFGTDENERGFQMFDSA
SFGGHDLLFRDDTHHLVEVGSKDSWEKWLGQEYLRCIRSHHAVEPVQPHS
TLRWCTISSQEQQKCQEMSQHVSRNLNHRLECVQGQSSEDCMYKISHHQA
DVITLDGGDIYTAGSEHNLVPVMGEDYGN Run BLAST on NCBI mRNA from alignment at Sc0000043:1265847..1268209- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97204_cuf11 ID=transcript:BL97204_cuf11|Name=transcript:BL97204_cuf11|organism=Branchiostoma lanceolatum|type=mRNA|length=2363bp|location=Sequence derived from alignment at Sc0000043:1265847..1268209- (Branchiostoma lanceolatum)
GGCGTAAGTCCTGCCACACCGGTATCGGCAAGACGTCCGGCTGGATCATC
CCCACCGGCTGGCTGGTAGACCAGGACTTTGTTCACACCGATGGTCAGAC
TAGTCTGGTTCAGGCTGTGGGACACTTCTTCAGCCAGAGCTGTGTGCCTG
GTCAGTATGTCATTCTTGTAGTCTTGGATTACTTCTTGTTAGCAGGATCT
GTTTAGTCCAGAATGAGAACTTTTAAAGAAAAAGTTCTACACCTCTATAT
TAGTCATTATTGGCACTTAAATGTTAACTGCATGTAAATGTTTTCAGCTA
GACGAACATTTGATATCTTGAAATGGTTTCCATCAAACCTTGTAGATTCG
GCACTGAATATACCTCTATTTACACAAAGGTGCCAAGAGCCCTGAGTACG
ATCCCCAGAACACCAACCCCTCCAACCTGTGCTCCCTGTGTGCTGGTGCT
GGAGAGGACCACTGTGTGAGGAACAAGAACGAGCCGTACTACGGATATGC
TGGGGCATTCAGGTATTCAGTCATTCTTTCAGTTATTTTACCACCAGAAC
ATAGCTCAAGTTCGTGATCTGTTTGTCAGGTGTTCCTTGATACATACAGG
CTCATGGTTTGATTTGCAAATATTTGAATGGATTTATGATGTTCACATGA
TTATCGATAGTTTGCTAAACCTAATCTTGATATGTGGTTGTCCCCTCCAG
GTGCCTTGCTGAGGGATCCGGTGATGTTGCCTTCATCAACCACCTGACCG
TCCAGGACAACACTGATGGACACAACCCTGAGAACTGGGCCGCTGGCCTG
CGCTCCAACGAGTTTGAGCTGCTGTGCACGGATGGTTCCCGCCGTCCCGT
GGACCAGTGGCGCGAGTGCAGCCTGGCCCGTGTTCCGTCCCACGCTGTGA
TGACGTCCAACGACAGGAACCAGGAGTGGGTGGACAGGGCAGTGCAGCTG
TTGAAGAACACTCAGGTGAGAAATCTGAAGAATCTGGGTAAAATTGAGTA
CTGTAAATTCATTTACATTTGCGGTGGTTTTATGTTGCAGTTGGAGGGGT
AAGAAGGTTTTGGCTGTGTTATAAATTCTCAGTTTAAACAATTCTACAGT
AGAGTAGTCATAAAAAGGAGACATATTTACGGTGCCATGACTTTGCAGTA
CAGCGACCACTGCGAAAAACCACAAAATTAAACCACTGCAAAAGTTTCAT
GATTTACAGTGTATTGACCATATCCTCATCTGTGTATTGTAGAGCTGAAA
GAAGGTGTTTTGAAAATCACCATTTCCATCCACAGGACATGTTTGGTACG
GATGAGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCCTCCTTCGGCGG
CCACGACCTGCTGTTCCGTGATGACACCCATCATCTGGTGGAGGTGGGCA
GCAAGGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACCTGCGCTGTATC
CGCAGTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGTAAGATCAAGTC
TTTATTTCGAGCCAATGCTTTGAAAAATGCAAGCATTCTGTTGTTGAATC
ATTGTGAATTTTTTAATTTTCAAGTGCTCACAGAAAGTACTATTTTGTTG
CACAGGCACCTTGCGCTGGTGCACCATCTCCAGCCAGGAGCAGCAGAAGT
GCCAGGAGATGAGCCAGCATGTCAGCAGGAACCTGAACCACAGGCTGGAG
TGTGTACAGGGCCAGTCTAGTGAGGACTGCATGTACAAGATCTCTCACCA
CCAGGTGAGGAACACAACAGTTTATATACATATTATGATACATCTTTTAC
AACAGAAAGCAGAATTAACTTCTAACATCCTGCAACGTACATTTATCAGG
CGCATGAAGAAAGCAGACATTTCAATGTCTACATTAAACAAATTTCATTT
GGGAAGTTTTGTGTTATGAGGATCAGCGTTTAACAGTGCCAGTAATAGAA
CAGTATAGGATGTATGTCTTACAGCAAAGATTCTTCTAGTGCCAACACAT
GTGTTAGTGTTTAATAATGAACTGCGACCTCAATGACGTCATCGCATAAG
GGTCATGTGACCCACCCGTCACTCCGTTCCATCGAGTCAGGCGGCCATGT
CACAACATCCATGTTCCTAATAAACATCTGAAGTATCAGGTAACATCCCC
GAGCAGAGTCACTCTTTTGCGCCTCTTGGCTACTTACTGACGTAGTTGCT
TGTTAGTTTATGGTACTGGGATACGTAACTGTACTTCACATGTTTTCATC
ATTACATTTGGTTCAATCTTCAGGCTGATGTGATCACCCTGGATGGGGGA
GACATCTACACTGCCGGATCTGAGCACAACCTTGTGCCGGTCATGGGAGA
GGACTATGGAAAT Coding sequence (CDS) from alignment at Sc0000043:1265847..1268209- >transcript:BL97204_cuf11 ID=transcript:BL97204_cuf11|Name=transcript:BL97204_cuf11|organism=Branchiostoma lanceolatum|type=CDS|length=5922bp|location=Sequence derived from alignment at Sc0000043:1265847..1268209- (Branchiostoma lanceolatum)
CGTAAGTCCTGCCACACCGGTATCGGCAAGACGTCCGGCTGGATCATCCC
CACCGGCTGGCTGGTAGACCAGGACTTTGTTCACACCGATGGTCAGACTA
GTCTGGTTCAGGCTGTGGGACACTTCTTCAGCCAGAGCTGTGTGCCTGGT
GCCAAGAGCCCTGAGTACGATCCCCAGAACACCAACCCCTCCAACCTGTG
CTCCCTGTGTGCTGGTGCTGGAGAGGACCACTGTGTGAGGAACAAGAACG
AGCCGTACTACGGATATGCTGGGGCATTCAGGTGCCTTGCTGAGGGATCC
GGTGATGTTGCCTTCATCAACCACCTGACCGTCCAGGACAACACTGATGG
ACACAACCCTGAGAACTGGGCCGCTGGCCTGCGCTCCAACGAGTTTGAGC
TGCTGTGCACGGATGGTTCCCGCCGTCCCGTGGACCAGTGGCGCGAGTGC
AGCCTGGCCCGTGTTCCGTCCCACGCTGTGATGACGTCCAACGACAGGAA
CCAGGAGTGGGTGGACAGGGCAGTGCAGCTGTTGAAGAACACTCAGGACA
TGTTTGGTACGGATGAGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCC
TCCTTCGGCGGCCACGACCTGCTGTTCCGTGATGACACCCATCATCTGGT
GGAGGTGGGCAGCAAGGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACC
TGCGCTGTATCCGCAGTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGC
ACCTTGCGCTGGTGCACCATCTCCAGCCAGGAGCAGCAGAAGTGCCAGGA
GATGAGCCAGCATGTCAGCAGGAACCTGAACCACAGGCTGGAGTGTGTAC
AGGGCCAGTCTAGTGAGGACTGCATGTACAAGATCTCTCACCACCAGGCT
GATGTGATCACCCTGGATGGGGGAGACATCTACACTGCCGGATCTGAGCA
CAACCTTGTGCCGGTCATGGGAGAGGACTATGGAAATCGTAAGTCCTGCC
ACACCGGTATCGGCAAGACGTCCGGCTGGATCATCCCCACCGGCTGGCTG
GTAGACCAGGACTTTGTTCACACCGATGGTCAGACTAGTCTGGTTCAGGC
TGTGGGACACTTCTTCAGCCAGAGCTGTGTGCCTGGTGCCAAGAGCCCTG
AGTACGATCCCCAGAACACCAACCCCTCCAACCTGTGCTCCCTGTGTGCT
GGTGCTGGAGAGGACCACTGTGTGAGGAACAAGAACGAGCCGTACTACGG
ATATGCTGGGGCATTCAGGTGCCTTGCTGAGGGATCCGGTGATGTTGCCT
TCATCAACCACCTGACCGTCCAGGACAACACTGATGGACACAACCCTGAG
AACTGGGCCGCTGGCCTGCGCTCCAACGAGTTTGAGCTGCTGTGCACGGA
TGGTTCCCGCCGTCCCGTGGACCAGTGGCGCGAGTGCAGCCTGGCCCGTG
TTCCGTCCCACGCTGTGATGACGTCCAACGACAGGAACCAGGAGTGGGTG
GACAGGGCAGTGCAGCTGTTGAAGAACACTCAGGACATGTTTGGTACGGA
TGAGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCCTCCTTCGGCGGCC
ACGACCTGCTGTTCCGTGATGACACCCATCATCTGGTGGAGGTGGGCAGC
AAGGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACCTGCGCTGTATCCG
CAGTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGCACCTTGCGCTGGT
GCACCATCTCCAGCCAGGAGCAGCAGAAGTGCCAGGAGATGAGCCAGCAT
GTCAGCAGGAACCTGAACCACAGGCTGGAGTGTGTACAGGGCCAGTCTAG
TGAGGACTGCATGTACAAGATCTCTCACCACCAGGCTGATGTGATCACCC
TGGATGGGGGAGACATCTACACTGCCGGATCTGAGCACAACCTTGTGCCG
GTCATGGGAGAGGACTATGGAAATCGTAAGTCCTGCCACACCGGTATCGG
CAAGACGTCCGGCTGGATCATCCCCACCGGCTGGCTGGTAGACCAGGACT
TTGTTCACACCGATGGTCAGACTAGTCTGGTTCAGGCTGTGGGACACTTC
TTCAGCCAGAGCTGTGTGCCTGGTGCCAAGAGCCCTGAGTACGATCCCCA
GAACACCAACCCCTCCAACCTGTGCTCCCTGTGTGCTGGTGCTGGAGAGG
ACCACTGTGTGAGGAACAAGAACGAGCCGTACTACGGATATGCTGGGGCA
TTCAGGTGCCTTGCTGAGGGATCCGGTGATGTTGCCTTCATCAACCACCT
GACCGTCCAGGACAACACTGATGGACACAACCCTGAGAACTGGGCCGCTG
GCCTGCGCTCCAACGAGTTTGAGCTGCTGTGCACGGATGGTTCCCGCCGT
CCCGTGGACCAGTGGCGCGAGTGCAGCCTGGCCCGTGTTCCGTCCCACGC
TGTGATGACGTCCAACGACAGGAACCAGGAGTGGGTGGACAGGGCAGTGC
AGCTGTTGAAGAACACTCAGGACATGTTTGGTACGGATGAGAACGAGCGT
GGCTTCCAGATGTTTGACTCCGCCTCCTTCGGCGGCCACGACCTGCTGTT
CCGTGATGACACCCATCATCTGGTGGAGGTGGGCAGCAAGGACAGCTGGG
AGAAGTGGCTGGGACAGGAGTACCTGCGCTGTATCCGCAGTCACCATGCT
GTGGAGCCAGTCCAGCCTCACAGCACCTTGCGCTGGTGCACCATCTCCAG
CCAGGAGCAGCAGAAGTGCCAGGAGATGAGCCAGCATGTCAGCAGGAACC
TGAACCACAGGCTGGAGTGTGTACAGGGCCAGTCTAGTGAGGACTGCATG
TACAAGATCTCTCACCACCAGGCTGATGTGATCACCCTGGATGGGGGAGA
CATCTACACTGCCGGATCTGAGCACAACCTTGTGCCGGTCATGGGAGAGG
ACTATGGAAATCGTAAGTCCTGCCACACCGGTATCGGCAAGACGTCCGGC
TGGATCATCCCCACCGGCTGGCTGGTAGACCAGGACTTTGTTCACACCGA
TGGTCAGACTAGTCTGGTTCAGGCTGTGGGACACTTCTTCAGCCAGAGCT
GTGTGCCTGGTGCCAAGAGCCCTGAGTACGATCCCCAGAACACCAACCCC
TCCAACCTGTGCTCCCTGTGTGCTGGTGCTGGAGAGGACCACTGTGTGAG
GAACAAGAACGAGCCGTACTACGGATATGCTGGGGCATTCAGGTGCCTTG
CTGAGGGATCCGGTGATGTTGCCTTCATCAACCACCTGACCGTCCAGGAC
AACACTGATGGACACAACCCTGAGAACTGGGCCGCTGGCCTGCGCTCCAA
CGAGTTTGAGCTGCTGTGCACGGATGGTTCCCGCCGTCCCGTGGACCAGT
GGCGCGAGTGCAGCCTGGCCCGTGTTCCGTCCCACGCTGTGATGACGTCC
AACGACAGGAACCAGGAGTGGGTGGACAGGGCAGTGCAGCTGTTGAAGAA
CACTCAGGACATGTTTGGTACGGATGAGAACGAGCGTGGCTTCCAGATGT
TTGACTCCGCCTCCTTCGGCGGCCACGACCTGCTGTTCCGTGATGACACC
CATCATCTGGTGGAGGTGGGCAGCAAGGACAGCTGGGAGAAGTGGCTGGG
ACAGGAGTACCTGCGCTGTATCCGCAGTCACCATGCTGTGGAGCCAGTCC
AGCCTCACAGCACCTTGCGCTGGTGCACCATCTCCAGCCAGGAGCAGCAG
AAGTGCCAGGAGATGAGCCAGCATGTCAGCAGGAACCTGAACCACAGGCT
GGAGTGTGTACAGGGCCAGTCTAGTGAGGACTGCATGTACAAGATCTCTC
ACCACCAGGCTGATGTGATCACCCTGGATGGGGGAGACATCTACACTGCC
GGATCTGAGCACAACCTTGTGCCGGTCATGGGAGAGGACTATGGAAATCG
TAAGTCCTGCCACACCGGTATCGGCAAGACGTCCGGCTGGATCATCCCCA
CCGGCTGGCTGGTAGACCAGGACTTTGTTCACACCGATGGTCAGACTAGT
CTGGTTCAGGCTGTGGGACACTTCTTCAGCCAGAGCTGTGTGCCTGGTGC
CAAGAGCCCTGAGTACGATCCCCAGAACACCAACCCCTCCAACCTGTGCT
CCCTGTGTGCTGGTGCTGGAGAGGACCACTGTGTGAGGAACAAGAACGAG
CCGTACTACGGATATGCTGGGGCATTCAGGTGCCTTGCTGAGGGATCCGG
TGATGTTGCCTTCATCAACCACCTGACCGTCCAGGACAACACTGATGGAC
ACAACCCTGAGAACTGGGCCGCTGGCCTGCGCTCCAACGAGTTTGAGCTG
CTGTGCACGGATGGTTCCCGCCGTCCCGTGGACCAGTGGCGCGAGTGCAG
CCTGGCCCGTGTTCCGTCCCACGCTGTGATGACGTCCAACGACAGGAACC
AGGAGTGGGTGGACAGGGCAGTGCAGCTGTTGAAGAACACTCAGGACATG
TTTGGTACGGATGAGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCCTC
CTTCGGCGGCCACGACCTGCTGTTCCGTGATGACACCCATCATCTGGTGG
AGGTGGGCAGCAAGGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACCTG
CGCTGTATCCGCAGTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGCAC
CTTGCGCTGGTGCACCATCTCCAGCCAGGAGCAGCAGAAGTGCCAGGAGA
TGAGCCAGCATGTCAGCAGGAACCTGAACCACAGGCTGGAGTGTGTACAG
GGCCAGTCTAGTGAGGACTGCATGTACAAGATCTCTCACCACCAGGCTGA
TGTGATCACCCTGGATGGGGGAGACATCTACACTGCCGGATCTGAGCACA
ACCTTGTGCCGGTCATGGGAGAGGACTATGGAAATCGTAAGTCCTGCCAC
ACCGGTATCGGCAAGACGTCCGGCTGGATCATCCCCACCGGCTGGCTGGT
AGACCAGGACTTTGTTCACACCGATGGTCAGACTAGTCTGGTTCAGGCTG
TGGGACACTTCTTCAGCCAGAGCTGTGTGCCTGGTGCCAAGAGCCCTGAG
TACGATCCCCAGAACACCAACCCCTCCAACCTGTGCTCCCTGTGTGCTGG
TGCTGGAGAGGACCACTGTGTGAGGAACAAGAACGAGCCGTACTACGGAT
ATGCTGGGGCATTCAGGTGCCTTGCTGAGGGATCCGGTGATGTTGCCTTC
ATCAACCACCTGACCGTCCAGGACAACACTGATGGACACAACCCTGAGAA
CTGGGCCGCTGGCCTGCGCTCCAACGAGTTTGAGCTGCTGTGCACGGATG
GTTCCCGCCGTCCCGTGGACCAGTGGCGCGAGTGCAGCCTGGCCCGTGTT
CCGTCCCACGCTGTGATGACGTCCAACGACAGGAACCAGGAGTGGGTGGA
CAGGGCAGTGCAGCTGTTGAAGAACACTCAGGACATGTTTGGTACGGATG
AGAACGAGCGTGGCTTCCAGATGTTTGACTCCGCCTCCTTCGGCGGCCAC
GACCTGCTGTTCCGTGATGACACCCATCATCTGGTGGAGGTGGGCAGCAA
GGACAGCTGGGAGAAGTGGCTGGGACAGGAGTACCTGCGCTGTATCCGCA
GTCACCATGCTGTGGAGCCAGTCCAGCCTCACAGCACCTTGCGCTGGTGC
ACCATCTCCAGCCAGGAGCAGCAGAAGTGCCAGGAGATGAGCCAGCATGT
CAGCAGGAACCTGAACCACAGGCTGGAGTGTGTACAGGGCCAGTCTAGTG
AGGACTGCATGTACAAGATCTCTCACCACCAGGCTGATGTGATCACCCTG
GATGGGGGAGACATCTACACTGCCGGATCTGAGCACAACCTTGTGCCGGT
CATGGGAGAGGACTATGGAAAT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| Sc0000043 | genome | Sc0000043:1265847..1268209 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97204_cuf11 |
| Biotype | protein_coding |
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