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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96591_cuf15 >transcript:BL96591_cuf15-protein ID=transcript:BL96591_cuf15-protein|Name=transcript:BL96591_cuf15|organism=Branchiostoma lanceolatum|type=polypeptide|length=221bp
MPPSPLSGCGHCKKMKPAYQEAAETLKTAGPGAKLAAVDCTKYGALAKAY
QVRGYPTIKYFRSGEEIQKYQGARDADSIVRFMTKPPTVAPPEWTEGPSA
VVTPIKTIPAFDKFVQSHENTLVLFYKKELPKYTQAKAPFMKTAAAFRDD
NSKEFAAVDCEAVTDLCMRVGIIPESLPTIKFYVNGKFSTNYKDPVTNVN
LYNFMNAAGSVPVKTDNREEL Run BLAST on NCBI mRNA from alignment at Sc0000000:8838992..8844675+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96591_cuf15 ID=transcript:BL96591_cuf15|Name=transcript:BL96591_cuf15|organism=Branchiostoma lanceolatum|type=mRNA|length=5684bp|location=Sequence derived from alignment at Sc0000000:8838992..8844675+ (Branchiostoma lanceolatum)
GTTCTATGCGCCATGTAAGTCAGAAACTCTTCTTTTATTTGTTACCTTTG
CCAAGAAGGTTATGTCCGTGGTAGTGTATAGTGAACTTAAAAGTGAGCGG
GAGAAGTCACATGTCAACATGAAATAACAGAAACATAATCCAGGTATTTT
ATGCAATATGACAAGAAAGTAACCCAACAAATGCCCCCCTCCCCCTTATC
AGGGTGTGGCCACTGCAAGAAGATGAAGCCAGCTTACCAGGAGGCTGCAG
AAACGCTGAAGACTGCCGGCCCCGGGGCTAAACTTGCAGCTGTGGACTGC
ACCAAATATGGAGCTCTGGCCAAAGCATACCAAGTCAGGGGCTACCCGAC
CATCAAGTACTTCAGGTGGGCTGTTGACAGTCTTTGAAGCTATATCTGTA
CCTGTATTGATATAGTTCAATCAGCAGAACCACCCTTAAGTAAAGCACAC
CAGCTTTGTAGTTCATTAAAGCTAGTGAGGTCTTTGATTCCCCTACTGTT
TTTGGTCACAATGAGTTCCACAATAATTCTAGGAAAGCAGGAATTTTTTA
ATTTTTGACATTTCGTAAAGGCTACACTTATTGATTTAGTCACTCTGAGT
AATAAATGTGACAATTGTTAGCATTCACAGATTTTGTCTGACCTTGATTA
TGTTTAAAAGGTTCACTGCTTTCTGGACAATTTGAAAGATTTTATCTTCA
GAAAAGGGCTTATTGATTGAGTTTTAGCAGAAAGCAGTTCCAAAGTTTCT
TTCTTGTGTTTTTTTGAAGGAGTGGTGAGGAGATACAGAAGTACCAGGGA
GCCAGGGATGCCGACAGCATCGTGCGGTTNAAATGCCCCCCTCCCCCTTG
TCAGGGTGTGGCCACTGCAAGAAGATGAAGCCAGCTTACCAGGAGGCTGC
AGAAACGCTGAAGACTGCCGGCCCCGGGGCTAAACTTGCAGCTGTGGACT
GCACCAAATATGGAGCTCTGGCCAAAGCATACCAAGTCAGGGGCTACCCG
ACCATCAAGTACTTCAGGTGGGCTGTTGACAGTCTTTGAAGCTATATCTG
TACCTGTATTGATATAGTTCAATCAGCAGAACCACCCTTAAGTAAAGCAC
ACCAGCTTTGTAGTTCATTAAAGCTAGTGAGGTCTTTGATTCCCCTACTG
TTTTTGGTCACAATGAGTTCCACAATAATTCTAGGAAAGCAGGAATTTTT
TAATTTTTGACATTTCGTAAAGGCTACACTTATTGATTTAGTCACTCTGA
GTAATAAATGTGACAATTGTTAGCATGCACAGATTTTGTCTGACCTTGAT
TATGTTTAAAAGGTTCACTGCTTTCTGGACAATTTGAAAGATTTTATCTT
CAGAAAAGGGCTTATTGATTGAGTTTTAGCAGAAAGCAGTTCCAAAGTTT
CTTTCTTGTGTTTTTTTGAAGGAGTGGTGAGGAGATACAGAAGTACCAGG
GAGCCAGAGATGCCGACAGCATCGTGCGGTTTATGACAAAGTGAGTTGTT
AACTAATCTATATCAGATCTGTTCTTGTCGCTCTGACACATTTTATACCT
TTTAGTTGTATGTGAGAGGTCAAACAAATCATCCTCTTGACGAGTTACTG
TAAATGCATTTAAATATGCAAGGTTTTTATTTCGCAGTAGGGAGAAAATG
GAGTGTTCGCTGTGGTTTTAAGTTCGTGCTTGAATCAATAGTAGCGCCAC
AGTCATAGGTGATCAAAAAGTTTTGTGGTGGTTTTAAGTTTGCAGCGAAG
AGTTCACCGCAAAACCGCGAACATAAAACCACTGCGAATATTTCTGCATT
TACAGTAGGTGCTGGGATGTTTCTGACTCTTTCCCTCAAACTCTCCGGAT
CCTCCATAATTCTTGAAAGCTCTTTTAGTTCACAGCACACATCCTCACGG
TGTAGATGTAAGAGGATAAAATATGATTCCTCTTTCGCTCCATCCCTCCG
AATCTTCCATAGCTTTAGGAAGATCTTCTAGTTCAGAGCACACATCCTCA
CAGAGTTGGAGTAAGACTGATAAAATATCTCATCATCTTGACCAGCTGGT
TGCTCTGGTGTTCTTGACTCTCTCTCTCCATCTCTCCCAGTCCTACCTAG
GTCTAGGTAGGTTTTGCAGTTGATATCGGTAGCTTGCACAAAGTCTCCCT
ACCCTTGCTTGACTGAATATCATGTTTAAACAGGAACATCACTATCCGGA
TATCCCAAGCCTGTATATAACTGCCTCTTGTCACATGATAATTAACATCA
TCAGTCACGTGATAAGAACTCCAATAAGAGATCTGATTTTACGGGGTTGA
AGAAGGGACATTCTTAAGACATTCCACGTAAACTTCTTTTAAGTAGCCGT
GTTAGCTTAAAACTTTAATGTTGCACAAAGAGAGGTGTGTTTGCTGGTAT
GTGGATAGTGTTCAGCACCAAGGACAGGTATATTTGCTTGTGTGTGGGTA
GTGTTCAGCGCCAAGGATAGGTATGTTTGCTTGACTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGATGGTGTTCAGCAC
AAAGGACAGGTATGTGCACCTGTGTGTACATGGTTTTCAGCACCAAGGAC
AGGTATTTTACTTGTTTGTGTTTGTGTGGATGATGTTTAGCACCAAGGAC
AGGTATGTTTACCTGTGTGTGGATGGTGTTAAGCACCAATTACAGGTGTG
TTTACTTATGTGTGTGTATAGTGTGTCTCAACAACTCCCAAAAAGTAGCA
AACTTTTCTGTTGTGTACAAGCGTTTAAAAAGTAAGGTATGTTGATTGTT
CCCCCCAGGCCCCCGACAGTAGCCCCCCCAGAGTGGACGGAGGGCCCCAG
TGCTGTCGTCACCCCCATCAAAACTATCCCTGCTTTCGACAAGTTCGTCC
AAAGCCATGTAAGTAGACTCCTCTCAGACATCATTCTTTGTATGTATGTA
CATGTATGTATTGTATTATTTTTCTGTACACAACATTTTTGCTTTGTTTT
ATAGTCTTATTATAACGTATTGATACATTTTTTCTAAAAGTATCATATGA
TAATGTTCTTCTGATTCCTTGTGTAGCTGTAACACATATGTATGTTAGCT
TGTTATTTCTTCAAGTTGTCATATTTGATATTAATAGATATTTTCTATGC
CTTGTGTGGAACCAGGAAAAATGGGTTGTGAATGTGTGTGTGATCACCTT
CAGATGTGAGAAGCACAAAAATAAAGTAGAGTTGAAAATATAAGAAATCT
ACCCAGGTTTCTTTATTTTATGCCAGTTTGGATTGCAGCGAAAAGCTGCC
AGCCCTGTATATAAGAGGAAGCTTTTGGCATCAAACCTCTGCATGTAAAA
GAACAAGACACAGTTGCACGATTGTAGATGTGTACATGTATCAAGAAGAG
TAGTGGTAATCTGATGTGTTTGACATTTAACGTGAGCCATAGCAAAGCCA
CATCATGCTACTTGCCAAAGCTTTTCACTTCACCTCAATTGAGGATGACA
TAGGAAGAAGAAGAAGCTGACTTGTTATATTTATTTCCTGTAGGAGAATA
CCCTGGTACTGTTCTATAAGAAAGAGTTACCGAAGTACACACAAGCAAAG
GCACCCTTCATGAAGACAGCCGCTGCCTTCAGAGACGACAACAGTAAGGA
GTTTGCTGCAGTGGACTGTGAGGCAGTCACAGGTTAGTATTGATATCCAA
CTTATGATATTTTCTCGTTTGTCTCTCGTAATCGAGTCCAATAGGAGCCC
AGGAAATCTTCTGTCACCAAGGAAACCAATCGTCACAGCTTCCAACACCA
TGGCAAGAGATGATTTTCAGTTTGACAGGAATTGATCAATGTTAGCACAT
ACATTTGTACAAGTATTTGCATACATGTAAATCAACAGTTCCCAATTCTC
CTGACTAAGAGGTGTTGACCATCAAACTGCTGAAAACATGATTTAGTCAG
GCTACAAAACATAGACAATTATTCAGTACAAAGGTTAGTCAAGAAACTGG
ATAAGTTTTGTAAACGGTCAGACATTTCAGACAGCATCTGCTATTTTTCA
TCAGTGACACATAATTTTATACATTTCTGTAACTAGAAAAAGAAATGGTG
CCAAAACAAAACCATAACACCAAGCTCATATATAACTGTGTATCTTACGT
GAAAAGACAGTTACGATCAAGCAACTAGATAAAATTTTGAATCTTATTGT
GTATCTTAGTAACTGGATGTCTAACCTTCATTGACGTATCAATTGACAAT
TACTAATAACTAATACAATTTTTTTCATTCTTTTTCAGACCTGTGTATGC
GCGTTGGGATCATCCCAGAGTCACTCCCCACCATCAAGTTCTACGTGAAC
GGCAAATTCTCCACGAACTACAAAGATCCGGTCACGAATGTCAACCTTTA
CAACTTCATGAACGCGGCGGGCTCTGTGCCAGTAAAAACAGACAACAGGG
AAGAATTATAACAGTAGCTATCTTCATAGGCGGGAGAATTCTGTATGTAG
TAAGGCAGCAAATTCCCTATTTAGTAAACCCTGTGATTGCCTTTGTCAGG
CTGGTTTAGGTCATTTGAGGTAAAAAAAAAAGACTCAAAAGAAAAGTTAT
TACCGTTACAGTAGCTATCTTCATAGGCGGGAGTATAAGCAAGTTCACGG
TTTGAACTGAGCATGCAAAAGGTCAAAGGTGAAGGCCCCTAACTTGTAAA
CAGCTGTTCTTTTCAAGACATGTTTTGTTTATGTCTTAGAGTCCTTCAAC
TTTGTACATGTACTACCTACAATGGATCACACTGTACATGTGCATTTCGA
ACGGTGAATGAGCTTATTGTAGGCAGCAAATTTGCTATTGAGCAAACTCT
CTGAACAGCTTTTCCTTCAAATATTTAGCTATGAAACGGTTTACTACCAG
GAAATTATGCAGATTGCCTTTTGTTGCACACAGGATCCAAAGTTGGATTC
TAGTATTGGGTAGTGTACTATGTATGTGCAGCATCTATTAAGTAATATCA
CTAGTTAAATTGATAGACACTCTTGGTTTATAAACAATATGATTCTGTTG
ATAAGCAAAGTGGCCATTAGTTTGTTGCCGAGCGGAAAAAGAATTCTTCG
AAAATCGTTGCAATATGATAATTTTGCAGCCAAGCATGCTAGGTAAGAAA
AAAACAAAACAGATTTAACTTTGGGGATATCAAGTGAATCAAGTGTAACA
GATAAATGCCATTGAAAGCTGTTTAATATGCGCATTTGTGATGAGAGTTT
AATATGCGCATTTGTAGTGAGTGAATGAGGAGCAGCTCTGTTGAGTCTTT
TTGTACCAAATCGTAGGTAATCCAGCCATCAGGAATGGTCTGATGGAAAA
CGTGTGCTGTCAGAACGCGCCTTGAACTTCAAATCACGCCTCCCTAGATT
TCTAACCATTTCTAGCCAAATCTATATATTTGTAGATAGTATGAATGGGT
GTGGCTGGATGAAAATGAATTCTAACACGGATTTTTATGCTGACATATTA
ACTGTATACAGTTGGATATATGATGACGTGGATGATGTAATATTGCTGAC
AGAAAAAGCAAAGTTCGTTTTTGAAATTGTACACTTTGCATACATGTACT
TCTAAAAAGTCAAACCTGTTAAGAGTCACTGCTCAATGACTTGAAGAAAT
GGTACATAGTAGACAGGTGACCACTATAGACAAG Coding sequence (CDS) from alignment at Sc0000000:8838992..8844675+ >transcript:BL96591_cuf15 ID=transcript:BL96591_cuf15|Name=transcript:BL96591_cuf15|organism=Branchiostoma lanceolatum|type=CDS|length=3330bp|location=Sequence derived from alignment at Sc0000000:8838992..8844675+ (Branchiostoma lanceolatum)
ATGCCCCCCTCCCCCTTGTCAGGGTGTGGCCACTGCAAGAAGATGAAGCC
AGCTTACCAGGAGGCTGCAGAAACGCTGAAGACTGCCGGCCCCGGGGCTA
AACTTGCAGCTGTGGACTGCACCAAATATGGAGCTCTGGCCAAAGCATAC
CAAGTCAGGGGCTACCCGACCATCAAGTACTTCAGGAGTGGTGAGGAGAT
ACAGAAGTACCAGGGAGCCAGAGATGCCGACAGCATCGTGCGGTTTATGA
CAAAGCCCCCGACAGTAGCCCCCCCAGAGTGGACGGAGGGCCCCAGTGCT
GTCGTCACCCCCATCAAAACTATCCCTGCTTTCGACAAGTTCGTCCAAAG
CCATGAGAATACCCTGGTACTGTTCTATAAGAAAGAGTTACCGAAGTACA
CACAAGCAAAGGCACCCTTCATGAAGACAGCCGCTGCCTTCAGAGACGAC
AACAGTAAGGAGTTTGCTGCAGTGGACTGTGAGGCAGTCACAGACCTGTG
TATGCGCGTTGGGATCATCCCAGAGTCACTCCCCACCATCAAGTTCTACG
TGAACGGCAAATTCTCCACGAACTACAAAGATCCGGTCACGAATGTCAAC
CTTTACAACTTCATGAACGCGGCGGGCTCTGTGCCAGTAAAAACAGACAA
CAGGGAAGAATTATAAATGCCCCCCTCCCCCTTGTCAGGGTGTGGCCACT
GCAAGAAGATGAAGCCAGCTTACCAGGAGGCTGCAGAAACGCTGAAGACT
GCCGGCCCCGGGGCTAAACTTGCAGCTGTGGACTGCACCAAATATGGAGC
TCTGGCCAAAGCATACCAAGTCAGGGGCTACCCGACCATCAAGTACTTCA
GGAGTGGTGAGGAGATACAGAAGTACCAGGGAGCCAGAGATGCCGACAGC
ATCGTGCGGTTTATGACAAAGCCCCCGACAGTAGCCCCCCCAGAGTGGAC
GGAGGGCCCCAGTGCTGTCGTCACCCCCATCAAAACTATCCCTGCTTTCG
ACAAGTTCGTCCAAAGCCATGAGAATACCCTGGTACTGTTCTATAAGAAA
GAGTTACCGAAGTACACACAAGCAAAGGCACCCTTCATGAAGACAGCCGC
TGCCTTCAGAGACGACAACAGTAAGGAGTTTGCTGCAGTGGACTGTGAGG
CAGTCACAGACCTGTGTATGCGCGTTGGGATCATCCCAGAGTCACTCCCC
ACCATCAAGTTCTACGTGAACGGCAAATTCTCCACGAACTACAAAGATCC
GGTCACGAATGTCAACCTTTACAACTTCATGAACGCGGCGGGCTCTGTGC
CAGTAAAAACAGACAACAGGGAAGAATTATAAATGCCCCCCTCCCCCTTG
TCAGGGTGTGGCCACTGCAAGAAGATGAAGCCAGCTTACCAGGAGGCTGC
AGAAACGCTGAAGACTGCCGGCCCCGGGGCTAAACTTGCAGCTGTGGACT
GCACCAAATATGGAGCTCTGGCCAAAGCATACCAAGTCAGGGGCTACCCG
ACCATCAAGTACTTCAGGAGTGGTGAGGAGATACAGAAGTACCAGGGAGC
CAGAGATGCCGACAGCATCGTGCGGTTTATGACAAAGCCCCCGACAGTAG
CCCCCCCAGAGTGGACGGAGGGCCCCAGTGCTGTCGTCACCCCCATCAAA
ACTATCCCTGCTTTCGACAAGTTCGTCCAAAGCCATGAGAATACCCTGGT
ACTGTTCTATAAGAAAGAGTTACCGAAGTACACACAAGCAAAGGCACCCT
TCATGAAGACAGCCGCTGCCTTCAGAGACGACAACAGTAAGGAGTTTGCT
GCAGTGGACTGTGAGGCAGTCACAGACCTGTGTATGCGCGTTGGGATCAT
CCCAGAGTCACTCCCCACCATCAAGTTCTACGTGAACGGCAAATTCTCCA
CGAACTACAAAGATCCGGTCACGAATGTCAACCTTTACAACTTCATGAAC
GCGGCGGGCTCTGTGCCAGTAAAAACAGACAACAGGGAAGAATTATAAAT
GCCCCCCTCCCCCTTGTCAGGGTGTGGCCACTGCAAGAAGATGAAGCCAG
CTTACCAGGAGGCTGCAGAAACGCTGAAGACTGCCGGCCCCGGGGCTAAA
CTTGCAGCTGTGGACTGCACCAAATATGGAGCTCTGGCCAAAGCATACCA
AGTCAGGGGCTACCCGACCATCAAGTACTTCAGGAGTGGTGAGGAGATAC
AGAAGTACCAGGGAGCCAGAGATGCCGACAGCATCGTGCGGTTTATGACA
AAGCCCCCGACAGTAGCCCCCCCAGAGTGGACGGAGGGCCCCAGTGCTGT
CGTCACCCCCATCAAAACTATCCCTGCTTTCGACAAGTTCGTCCAAAGCC
ATGAGAATACCCTGGTACTGTTCTATAAGAAAGAGTTACCGAAGTACACA
CAAGCAAAGGCACCCTTCATGAAGACAGCCGCTGCCTTCAGAGACGACAA
CAGTAAGGAGTTTGCTGCAGTGGACTGTGAGGCAGTCACAGACCTGTGTA
TGCGCGTTGGGATCATCCCAGAGTCACTCCCCACCATCAAGTTCTACGTG
AACGGCAAATTCTCCACGAACTACAAAGATCCGGTCACGAATGTCAACCT
TTACAACTTCATGAACGCGGCGGGCTCTGTGCCAGTAAAAACAGACAACA
GGGAAGAATTATAAATGCCCCCCTCCCCCTTGTCAGGGTGTGGCCACTGC
AAGAAGATGAAGCCAGCTTACCAGGAGGCTGCAGAAACGCTGAAGACTGC
CGGCCCCGGGGCTAAACTTGCAGCTGTGGACTGCACCAAATATGGAGCTC
TGGCCAAAGCATACCAAGTCAGGGGCTACCCGACCATCAAGTACTTCAGG
AGTGGTGAGGAGATACAGAAGTACCAGGGAGCCAGAGATGCCGACAGCAT
CGTGCGGTTTATGACAAAGCCCCCGACAGTAGCCCCCCCAGAGTGGACGG
AGGGCCCCAGTGCTGTCGTCACCCCCATCAAAACTATCCCTGCTTTCGAC
AAGTTCGTCCAAAGCCATGAGAATACCCTGGTACTGTTCTATAAGAAAGA
GTTACCGAAGTACACACAAGCAAAGGCACCCTTCATGAAGACAGCCGCTG
CCTTCAGAGACGACAACAGTAAGGAGTTTGCTGCAGTGGACTGTGAGGCA
GTCACAGACCTGTGTATGCGCGTTGGGATCATCCCAGAGTCACTCCCCAC
CATCAAGTTCTACGTGAACGGCAAATTCTCCACGAACTACAAAGATCCGG
TCACGAATGTCAACCTTTACAACTTCATGAACGCGGCGGGCTCTGTGCCA
GTAAAAACAGACAACAGGGAAGAATTATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:8838992..8844675 + |
Properties
| Property Name | Value |
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| Transcript id | BL96591_cuf15 |
| Biotype | protein_coding |
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