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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL96576_cuf0 >transcript:BL96576_cuf0-protein ID=transcript:BL96576_cuf0-protein|Name=transcript:BL96576_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=172bp
VQDTPEVGKLFQFLQVLSAGFGAFAHGGNDVSNAIGPVVALWLVYQEGSV
AQKSATPIWILFYGGAGMIIGLWVLGRRVIKTVGEDLTPITPSSGFTIEI
GAATTVLIASNIGIPISTTHCKVGSIVFVGWLRSRTSVDWKLFRNIVFAW
VVTLPVAGGISAAVMALLQLAL Run BLAST on NCBI mRNA from alignment at Sc0000000:2360138..2363276- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL96576_cuf0 ID=transcript:BL96576_cuf0|Name=transcript:BL96576_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=3139bp|location=Sequence derived from alignment at Sc0000000:2360138..2363276- (Branchiostoma lanceolatum)
AGGTGCAGGACACGCCGGAGGTGGGGAAGCTGTTCCAGTTCCTCCAGGTG
CTGTCGGCAGGGTTCGGGGCCTTCGCGCACGGAGGCAACGATGTCAGGTA
TGGAGTGGTACAGTTTCAGACTGATTCTCTCTCTTTATACACTTTAATCA
ATGACAGAGGCAATCACAGATGGCATACTTCACACACACATACCCCTTTA
ACTAAAATGCTTTGCAATGCATCTAATCCCATAGACGGAAATAGCAGCAT
TGAGATAGGATGGCAATACTGCAATTTGTATATTAGAACTGGCAGAAACG
CCCATCCATAGACACACACACACACACGCACACACACACACACAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGACATACTGT
CATACGTGCACCCATAACGTTAAATACACACAGAGACACACACAAGCCTG
GTGTGTTTCGCCATGATGCGGTTTACCAGGTATGCAACACAAGCAAACAA
GCAAAAACATTTCTTTGATGTCGATTGAATTGGCTCATTACCTGCAGTAA
TGCCATCGGCCCCGTGGTGGCGCTGTGGCTGGTCTACCAGGAGGGCAGCG
TTGCCCAGAAGTCGGCCACGCCCATCTGGATCCTGTTTTACGGGGGTGCG
GGCATGATCATCGGCCTGTGGGTGCTGGGACGCAGGGTCATTAAAACTGT
GGGAGAGGACCTGACCCCTATCACCCCTTCAAGGTGAGTGGTATACTCCA
GTTTATACATGTAGTACTCAGACGTCTGATTGACCTGTTTCTTTTGTGTG
TTTTAAAATCATTTTTATCATTTATTTTTTCTTATCATAATCATACGGAC
AGCTAAAATAAGATATAGATGTTTTGTATTTCACTAATAAGCTTGTATTC
ATAACTCCAGTTGGCCTTTTAAATGGTATCTTTGAGGATTTTTAAGATAT
GAACAGGCCTTTCATTGACGTCAAGTAGATCCCCTAGCGACCATGTTAGC
TTGTAAGTGAACTTATCAAAACAAAGCAGCAGCATATCTGCATGGTCAGA
CACGTACGCTGTAACGCTGTATCCAACATGGAGAAAATGACGTTAATTGA
AAAGCCAGGGTGTATACAGAAGGACATTGGCAAACGAATATTTTCAAAAT
CAGTTAAATGTCTGTTTTACCTTCACAGTGGCTTCACAATTGAGATCGGA
GCGGCCACTACTGTCCTTATCGCATCCAACATCGGCATTCCCATCAGCAC
AACCCACTGCAAGGTACGGGTTTGTTATTAAGCAAATTTGATTCACTCTA
AGACTTGCTTCTGTAAGTATGTTTGTGGTGGTTATATTTTAGTGTCTCCA
CCCCACACTACGAGTATGTGTTCCCAATGTATAAGGACTGTACTACAGAA
TTTTGTGTCTGTGTGTCTGTCTGCCTGTCTGTGTGTGTGTTTTCTGTGTT
TCCGGATTTTTGCAGTCAGCATAACTCAAGAACCTCTAAATGGATTACGA
TGACATTTGGTATGTGGGTATGTGTTGGGAAGACAAAGGTTGATTTTTGG
CCCCCAGTTAGGACCTGGACTACAGACACACACCAAAACAAACAAAAAAA
CAAATAGGTCGAAAACAATACCTCCATTTTCATGGAGGTAAAAAACGTTC
AATTGTGTTCTTGTTTACAATGTGTTTATATTCCATACTTGGGAAAAAAT
TGGACCTGGGCTAACTACAGACACACACCAACACCAGCATACAAACAAAC
AAACAGACTTAAAAGCAATACCTCAATTTTCATGGAGGTAAAGAAACATT
CACTTGTGTTTTGTTAACAATGTGTGTTTATTCTATACTTACAGGTGGGT
TCCATTGTTTTTGTCGGGTGGCTGAGATCTCGAACGTCGGTCGACTGGAA
GCTGTTCCGCAACATCGTGTTCGCCTGGGTCGTCACACTGCCTGTGGCGG
GCGGCATTTCCGCCGCCGTCATGGCTCTGCTGCAACTCGCGCTGTGATAC
TTGCCGATTAGCCTCTATCAGACTTACTACGCTGGTTCCCACCTCTACAG
CCTTTGGGCCACACAGGCCGCTACAGTAGGGTCCACTGGTAGGCTGCTTA
GGGTGCATCTCATTATATTGAAAAGGATGATGTTGACATTGGGTAAACCT
GACAATGAGAGTATTTTGTGCTAAAAACATTTCAACAGATGTGTATAACA
AAGGCATTCATAGTATTAGTATTAGTATAACCGGCACTTAATATACTTCA
TTTATACAACTTAAGTCCCCACCCCACAGCAGAATGGTCTTATGCAACTT
GTACTTACTGCCCAAAACTGTGCTACGCCCAAAGGAGGTTTACCAATTGT
GCAAAACAAACAAACAAATACAAAAACACTCCATCGATGTAATTGTATAT
ACACGCAAATATATTACATTGTATATATACTAGTATACCGAATTTCCCAA
TTTCTTAAAAGAAAAAAAAATGTTTATTCAATACAACATATAACAGATAT
ATAGATTACAGGTTATTCGGTACAGTGCAAAGTTGGTGCTAAGGAAACAA
GCTTTATATTTTCATCGTTGTTACTTTTTTATTACGGAAACAAGCTTATG
AAAATAATTGTATGATGATTCAACCAATGCTCTTTTTATTTCCTTGCGAC
ATGCAATATGTAGAAGAGTTGCACTACAAATGTATATCTAGAATCGTTGA
TGAAGGTTAGACATCCAGGTAATAAGATACGCCAAAATAGTTACTCAAGC
AACGGGATAAAATGTTGAAACAGGCAGACGTTTCAGACAGCATCCGCTAT
CTTTCGTCAGTGATTAAAGAAAGATCGGGCAGAACTAGGTTCTAGGAACC
ATCTGAAATTGTCTTCACTTCATTAACACATCTATTCAGAGTTTTGGTAT
AAAACCTATAAAATCTGCATTTTGGTGTGTTTGGAGTTACAAAGATGCCA
TATCAACAACGTTAAAGAGATAAATGTTTTGAACCGGAAAAGAAATCGGT
TACTAAATGTCGGCCGTCGAGCGAAGCATCGGAGGTTTACTGTCAATTAT
TTGAGTGGTGCGGTCGGGCGCTTTCAGTGCAACAGCGCCTCTAGCGGGAA
GTGCATGACCTGCTGCAGTTGTAGATACTGATACTACAA Coding sequence (CDS) from alignment at Sc0000000:2360138..2363276- >transcript:BL96576_cuf0 ID=transcript:BL96576_cuf0|Name=transcript:BL96576_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2076bp|location=Sequence derived from alignment at Sc0000000:2360138..2363276- (Branchiostoma lanceolatum)
GTGCAGGACACGCCGGAGGTGGGGAAGCTGTTCCAGTTCCTCCAGGTGCT
GTCGGCAGGGTTCGGGGCCTTCGCGCACGGAGGCAACGATGTCAGTAATG
CCATCGGCCCCGTGGTGGCGCTGTGGCTGGTCTACCAGGAGGGCAGCGTT
GCCCAGAAGTCGGCCACGCCCATCTGGATCCTGTTTTACGGGGGTGCGGG
CATGATCATCGGCCTGTGGGTGCTGGGACGCAGGGTCATTAAAACTGTGG
GAGAGGACCTGACCCCTATCACCCCTTCAAGTGGCTTCACAATTGAGATC
GGAGCGGCCACTACTGTCCTTATCGCATCCAACATCGGCATTCCCATCAG
CACAACCCACTGCAAGGTGGGTTCCATTGTTTTTGTCGGGTGGCTGAGAT
CTCGAACGTCGGTCGACTGGAAGCTGTTCCGCAACATCGTGTTCGCCTGG
GTCGTCACACTGCCTGTGGCGGGCGGCATTTCCGCCGCCGTCATGGCTCT
GCTGCAACTCGCGCTGTGAGTGCAGGACACGCCGGAGGTGGGGAAGCTGT
TCCAGTTCCTCCAGGTGCTGTCGGCAGGGTTCGGGGCCTTCGCGCACGGA
GGCAACGATGTCAGTAATGCCATCGGCCCCGTGGTGGCGCTGTGGCTGGT
CTACCAGGAGGGCAGCGTTGCCCAGAAGTCGGCCACGCCCATCTGGATCC
TGTTTTACGGGGGTGCGGGCATGATCATCGGCCTGTGGGTGCTGGGACGC
AGGGTCATTAAAACTGTGGGAGAGGACCTGACCCCTATCACCCCTTCAAG
TGGCTTCACAATTGAGATCGGAGCGGCCACTACTGTCCTTATCGCATCCA
ACATCGGCATTCCCATCAGCACAACCCACTGCAAGGTGGGTTCCATTGTT
TTTGTCGGGTGGCTGAGATCTCGAACGTCGGTCGACTGGAAGCTGTTCCG
CAACATCGTGTTCGCCTGGGTCGTCACACTGCCTGTGGCGGGCGGCATTT
CCGCCGCCGTCATGGCTCTGCTGCAACTCGCGCTGTGAGTGCAGGACACG
CCGGAGGTGGGGAAGCTGTTCCAGTTCCTCCAGGTGCTGTCGGCAGGGTT
CGGGGCCTTCGCGCACGGAGGCAACGATGTCAGTAATGCCATCGGCCCCG
TGGTGGCGCTGTGGCTGGTCTACCAGGAGGGCAGCGTTGCCCAGAAGTCG
GCCACGCCCATCTGGATCCTGTTTTACGGGGGTGCGGGCATGATCATCGG
CCTGTGGGTGCTGGGACGCAGGGTCATTAAAACTGTGGGAGAGGACCTGA
CCCCTATCACCCCTTCAAGTGGCTTCACAATTGAGATCGGAGCGGCCACT
ACTGTCCTTATCGCATCCAACATCGGCATTCCCATCAGCACAACCCACTG
CAAGGTGGGTTCCATTGTTTTTGTCGGGTGGCTGAGATCTCGAACGTCGG
TCGACTGGAAGCTGTTCCGCAACATCGTGTTCGCCTGGGTCGTCACACTG
CCTGTGGCGGGCGGCATTTCCGCCGCCGTCATGGCTCTGCTGCAACTCGC
GCTGTGAGTGCAGGACACGCCGGAGGTGGGGAAGCTGTTCCAGTTCCTCC
AGGTGCTGTCGGCAGGGTTCGGGGCCTTCGCGCACGGAGGCAACGATGTC
AGTAATGCCATCGGCCCCGTGGTGGCGCTGTGGCTGGTCTACCAGGAGGG
CAGCGTTGCCCAGAAGTCGGCCACGCCCATCTGGATCCTGTTTTACGGGG
GTGCGGGCATGATCATCGGCCTGTGGGTGCTGGGACGCAGGGTCATTAAA
ACTGTGGGAGAGGACCTGACCCCTATCACCCCTTCAAGTGGCTTCACAAT
TGAGATCGGAGCGGCCACTACTGTCCTTATCGCATCCAACATCGGCATTC
CCATCAGCACAACCCACTGCAAGGTGGGTTCCATTGTTTTTGTCGGGTGG
CTGAGATCTCGAACGTCGGTCGACTGGAAGCTGTTCCGCAACATCGTGTT
CGCCTGGGTCGTCACACTGCCTGTGGCGGGCGGCATTTCCGCCGCCGTCA
TGGCTCTGCTGCAACTCGCGCTGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000000 | genome | Sc0000000:2360138..2363276 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL96576_cuf0 |
| Biotype | protein_coding |
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