TCONS_00043498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043498
Unique NameTCONS_00043498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043498 ID=TCONS_00043498|Name=TCONS_00043498|organism=Clytia hemisphaerica|type=transcript|length=323bp
CTCGTTGAGCCaaaaaacctcaaaatttggcTCTCAGCTCATGGACTAAA
AGTGCTCTGTTCATGGAGATTGCAACACCTTTGACAATTGGCCTGTTTTC
TTTGGATTCCAGTAGAGCAGACTTAAACActgtgaaattaaaattttgtg
acattccaaaaaatctttctgaaatatttttacagcaTTCTGACTAAGTT
CAGAATCAGGTTCACAGTTACAGACTGTCTAAACGAATTTTGAGTGATCA
AACTAAAAAGTTTCGTCTTTAAAGTTAGTTATTCGATCTGtttagtttct
ttttttttgtgagAAATTAATTT
Run BLAST on NCBI

transcript from alignment at sc0004292:2770..3092

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043498 ID=TCONS_00043498|Name=TCONS_00043498|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at sc0004292:2770..3092 (Clytia hemisphaerica)
AAATTAATTTctcacaaaaaaaaagaaactaaaCAGATCGAATAACTAAC
TTTAAAGACGAAACTTTTTAGTTTGATCACTCAAAATTCGTTTAGACAGT
CTGTAACTGTGAACCTGATTCTGAACTTAGTCAGAAtgctgtaaaaatat
ttcagaaagattttttggaatgtcacaaaattttaatttcacagTGTTTA
AGTCTGCTCTACTGGAATCCAAAGAAAACAGGCCAATTGTCAAAGGTGTT
GCAATCTCCATGAACAGAGCACTTTTAGTCCATGAGCTGAGAgccaaatt
ttgaggttttttGGCTCAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027191XLOC_027191Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043498-exon-sc0004292-1491911889:2770..3092TCONS_00043498-exon-sc0004292-1491911889:2770..3092Clytia hemisphaericaexon
TCONS_00043498-exon-sc0004292-1510915933:2770..3092TCONS_00043498-exon-sc0004292-1510915933:2770..3092Clytia hemisphaericaexon
TCONS_00043498-exon-sc0004292-1575043694:2770..3092TCONS_00043498-exon-sc0004292-1575043694:2770..3092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004292supercontigsc0004292:2770..3092 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.11554	4.94887	3.68226	0.655593	3.69244	0.927337	0	2.31382	2.65797	0.327186	0.94581	0.507113	0	0.431427	0.0597612	0	0	0.745302	0.0372923	0.346152	0	1.97656	2.93482	0.824502	0.613803	0.963948	1.32496	0.304696	1.15736	0.899577
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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