Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003812 ID=TCONS_00003812|Name=TCONS_00003812|organism=Clytia hemisphaerica|type=transcript|length=532bp TACGAAGGCATTGACCCTGCTTACCTAGCACAAGCAGAACTAATGGCGTC CAACGAAGCTGCTATTCAACagaaccaacaacaacaacaaagttCTGCCT CATCTCAACAAAATGCTCAACAGATTTCTGCTGCTGACCTAGCAAATGCT CTATCCTTTGCTACAATGACACAAGatcCTGCTACACCGAGTAGTTTACC CTTTGGAAGTCCTGGTTCGCAACCCAATCGACAACCACAACCGGATttca CAGCTGGTATAGAACAAATGAGAACCGAGTTTAATATCTCTGAAGACGTG GCAAGAAGAGCTCTGGTAATGACCAACGGGAATGTGCAAATGGCTGTTAA CCTTGTTTTTGACGGATCTGTCAATTAATCAATGTTTTCAAATTCGATcc tattttttaaacaaaagttaAGTTTTGAATTAATACAATGTAGATTAACT AACAGCCATTGATAGGATGCTTGGATGGCTTGGTCATTCtggtcattttg gacagttctAAAACGTTGCTTGTTCTATCTTT Run BLAST on NCBI transcript from alignment at sc0000031:642877..648467- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003812 ID=TCONS_00003812|Name=TCONS_00003812|organism=Clytia hemisphaerica|type=transcript|length=5591bp|location=Sequence derived from alignment at sc0000031:642877..648467- (Clytia hemisphaerica) TACGAAGGCATTGACCCTGCTGTAAGTTGTTATTACCCCGCAGTGGCGGA
GAGCCTTTATTTCTTTTTTAAGAAGTATGGCTTCAAGAAACACTCTCCGT
CATTAACTTTGAACCCCTTCAGATCCATCAGAAGAGAACTTCACTCAACC
TGAAAAATTAGAGCGCTCTAGTTCACGTATGATAGATTACTGATGTTCGT
CCGTTCGTTAGTTCGTTAGTTCGTTAGTTCGTTAGTTTTCTCGAGATTGG
CTCATTAGTTTTTCCTGATTTTTGGCAAAAAGATGCAAAATAATAATAAT
AATAATAATATTTTTCCTCAGAGTTAAAAAGTAATAATAAATATATTTAT
AAATATGTTTTAAACTCTATTGAGGTTGGCGCCCGGGGAGCGCCAGGATT
TTCTTTCCACCATCATTGTTAGTGCATCTGACTCACTCAGTCCATACAAC
TTTGCATCTCTGATGACTTCACGGTATGTCGAATTCGTTACACCTGGTTT
CTTTTTTAGACCAGGGTGGTACTGTTCAAAAGTTAACTTTTTTATGTAGC
ATTCGTTTGAAGCTCGGGTGCAGTGTGCAATCAAGTTGTATTGCTGATGT
TGAAGGTACTTAGAAAGCGAAGGCCGGTCGATAAGGTTTTTGATTTGCTC
ATTTGAGTAAAGTAGTTTTTTGAATGCTCCTTTTTTTCCATCATTTGTTG
TATATTCAATCAGTTCAGGTTTGCGTTGATTACCTCCTCTGACTAGGTAA
CGTAAGAATTTGATATATTGACTCTCATTATGATCGAATTGTTTCTTGGT
CAATGTCCAGCACTGACATCCATACATGAGACGGGAGCGAACAAGTGATT
CGAGGTATAGAACTCTGGTGTGAAGTTTGATTTTANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGGCTTTCGGGTCCGCCTTGTCTGACTCCCGAGGT
AGTTTCAAAGATTATAGAACAACCTTTCATTGAACAGTTAGTTTTATCAT
ACATATCTTCAATGATCTTGAACATTGTTAGGTTTCCAAAGTATCCTTGG
ACAATGGTGAATAGCCAATCTCTACGGATGTGGTAATGTGTAATCATCGA
CAGAGTTGCCGTCGACCGGTGAACCATTTTGGCGATTTTCAATACTTCAA
TACAATAATTTTCAGCTATGTTAACATGAAGTAGAGGGTTCTCATTTTTT
TTGGCTGGGTAAAGCTTTTACCGATAGGACAACATTGAATTTCCACCTTC
TGTATATAGCTAAGATTTTGTAATATGTTCTAAGTGTTAAGTGTGTTAAG
CGAGAGGGAACTGAAAGTAGTTATGCGTCACCAAAGCACTTAATCTTATA
GTTCTAGGTCTCCTGACAACCACGTTTATTTGTTATCACTTTTTCAGTAC
CTAGCACAAGCAGAACTAATGGCGTCCAACGAAGCTGCTATTCAACAGAA
CCAACAACAACAACAAAGTTCTGCCTCATCTCAACAAAATGCTCAACAGA
TTTCTGCTGCTGACCTAGCAAATGCTCTATCCTTTGCTACAATGACACAA
GGTAATGGATGGAAACAGTTTTTTCTAAATTTCCGATCAAAGATGGTGGA
TATAGCTTGGTAGAACTTGGTAGAACTTCACAGTCGAAATGGACCATGGG
TAATCAGGACTGATTGCGCCCCGATAACGGTTTCCCGTTGGTTAGACGCA
AAAAAATTCAAAAATGTGGAGCAATAGTAAGTCGTCATTAGCGAGCAGTG
GTCCTGATTACCCATTACGCTTTGCAACTGTGAAATGGCCTATGTAAAGA
TCGGTCAGTGATACTAACCATGTGATCTTTTTAAACACTTTTTCTTTCAT
CTGTTGCTATTATTGTTGAAACAATCCAGGCTGGGAACTTTTTCACAGTC
TAGATTTTGATGTTTTCATGGATTATTTCTGATTTTCCGTCCGGTGGTCC
TGAATCGACTTTGTGTATATTGAATTGGGAATTAAGGGCATGATGCGGTG
GTTTGTAAATGGATTGTGCGTACACTCAACAAAAAGCTAACCCTTGGTTT
GCAGTTAATAATGAGACCACGTGTTAAATTTCGAGAAATCTGTACACAGG
GTATGTTTTTTCTTTGAGGTTTTCAAGCTTCCACATTTTTGGGCATGCTG
CTATGTAAAAATCGCTTGATGGAAATATTCTCAATTTTTCGTTTTTCTAT
TTTAGATCCTGCTACACCGAGTAGTTTACCCTTTGGAAGTCCTGGTTCGC
AACCCAATCGACAACCACAACCGGATGTAAGAATTGGATTTTCATTTTTT
GCTTCATTAAGAACCATACAGGGGGGGGGGACATTTTCAAGTCAAAAAAA
GAATTATTGAAAATGTGTGGATGCACTCTGGAAAATTTATTTATTTATTT
ATTTATAGTAATATATTTCGCAGGTCTATCGACCTCTATGAAATAATCAT
ATTTAACATTTTGTAGGCGCACAGTTGGCCTCTAATCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTATTTTGT
TGAATTTCGATTTTTTTTGGTATTTCTTTAGTTTTCGCCATTTTGATGCA
TTTCGACGAGCACAACCAGCCAGAAAAAAATTTGACGTCAAATGATTTAT
AATGAATTAATTAAAATAATTAATAATTATAAATGGCAATACCTTAAAGG
GAGGGTGGACGAAGCAAAATCAGTCTTTTACCCTCTGGAAATTTTAGAAT
AACTTTTTACCCTCTTGAAAAAATGATAAAACACTCCCTGGAAATTGTTC
TCGGATTACCCCCTAGAAATGTTTGTCCAATCCCCTTTATATGGATATAA
AATGGAATGGCCCAATGTATATGATTTCTATTCTGTCCGATTGGACTGCC
ACATCTATGCTATTAAATTATGCAAGGGTCTCGGTGCTACACAGTCCCTT
TACTGTTCTCCAGTCGAATAAGAGCAATGTTCATCTTTATCTGGCTCCCA
GATGCAGAAATTTTCATCCGGCACGCTAAAACTCGGGACAATTTTCAATA
TCTGGAAGGTTTAGATTACGGAATTTGGCAAGACCGCGTCAAGGATTTTG
CAGTAGGAGGCCTGGTAACCCAGCCCTCGTTCTCGGGGATTGGCGGGTCC
AACTGAAATATTTTTAGCTTTGCGAACGAGGGAACCCGACTGGGGATGTG
ACACATCAAAGGCTGACCATCATTTCTTTCCGAAGGGAAATTGACCCGCT
CCTTTAGAGCTTTAGCGTGCGCGGCCGCCAATCTGTTATTGGAATATTAG
ATAACCTTCTTCGCAAATTACCGTTTTGCTCGACCCACTCTCCAAAGTAA
AGGCTGGTTTCCACTTACGCGTGCTGCGATTGCACCGTTTGGCTTCAATC
CTTTTTGCTTGGAAAAAAGATTACGTCATAATAATGTAGCGCGCGCTCTT
TTCAAACATTACGTCAGATCGCGCCAATGGAATTGCTTCATTTTTCTTTT
GACCAATAGCGTGGAAGCTTTACCAGATAAAGTGCGGTCGCAGCGCGCGC
AAGTGGAGACCGGCCTTAAAAGAACTTAAAATGCATTACCTTTTGTTTTT
TTTAGTTCACAGCTGGTATAGAACAAATGAGAACCGAGTTTAATATCTCT
GAAGACGTGGCAAGAAGAGCTCTGGTAATGACCAACGGGAATGTGCAAAT
GGCTGTTAACCTTGTTTTTGACGGATCTGTCAATTAATCAATGTTTTCAA
ATTCGATCCTATTTTTTAAACAAAAGTTAAGTTTTGAATTAATACAATGT
AGATTAACTAACAGCCATTGATAGGATGCTTGGATGGCTTGGTCATTCTG
GTCATTTTGGACAGTTCTAAAACGTTGCTTGTTCTATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00003812-exon-sc0000031-1575043694:648447..648467 | TCONS_00003812-exon-sc0000031-1575043694:648447..648467 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1575043694:646267..646420 | TCONS_00003812-exon-sc0000031-1575043694:646267..646420 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1575043694:645542..645612 | TCONS_00003812-exon-sc0000031-1575043694:645542..645612 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1575043694:642877..643162 | TCONS_00003812-exon-sc0000031-1575043694:642877..643162 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1510915933:648447..648467 | TCONS_00003812-exon-sc0000031-1510915933:648447..648467 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1510915933:646267..646420 | TCONS_00003812-exon-sc0000031-1510915933:646267..646420 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1510915933:645542..645612 | TCONS_00003812-exon-sc0000031-1510915933:645542..645612 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1510915933:642877..643162 | TCONS_00003812-exon-sc0000031-1510915933:642877..643162 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1491911889:648447..648467 | TCONS_00003812-exon-sc0000031-1491911889:648447..648467 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1491911889:646267..646420 | TCONS_00003812-exon-sc0000031-1491911889:646267..646420 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1491911889:645542..645612 | TCONS_00003812-exon-sc0000031-1491911889:645542..645612 | Clytia hemisphaerica | exon |
TCONS_00003812-exon-sc0000031-1491911889:642877..643162 | TCONS_00003812-exon-sc0000031-1491911889:642877..643162 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000031 | supercontig | sc0000031:642877..648467 - |
Blast
The following BLAST results are available for this feature:
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