TCONS_00003812 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003812
Unique NameTCONS_00003812
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003812 ID=TCONS_00003812|Name=TCONS_00003812|organism=Clytia hemisphaerica|type=transcript|length=532bp
TACGAAGGCATTGACCCTGCTTACCTAGCACAAGCAGAACTAATGGCGTC
CAACGAAGCTGCTATTCAACagaaccaacaacaacaacaaagttCTGCCT
CATCTCAACAAAATGCTCAACAGATTTCTGCTGCTGACCTAGCAAATGCT
CTATCCTTTGCTACAATGACACAAGatcCTGCTACACCGAGTAGTTTACC
CTTTGGAAGTCCTGGTTCGCAACCCAATCGACAACCACAACCGGATttca
CAGCTGGTATAGAACAAATGAGAACCGAGTTTAATATCTCTGAAGACGTG
GCAAGAAGAGCTCTGGTAATGACCAACGGGAATGTGCAAATGGCTGTTAA
CCTTGTTTTTGACGGATCTGTCAATTAATCAATGTTTTCAAATTCGATcc
tattttttaaacaaaagttaAGTTTTGAATTAATACAATGTAGATTAACT
AACAGCCATTGATAGGATGCTTGGATGGCTTGGTCATTCtggtcattttg
gacagttctAAAACGTTGCTTGTTCTATCTTT
Run BLAST on NCBI

transcript from alignment at sc0000031:642877..648467-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003812 ID=TCONS_00003812|Name=TCONS_00003812|organism=Clytia hemisphaerica|type=transcript|length=5591bp|location=Sequence derived from alignment at sc0000031:642877..648467- (Clytia hemisphaerica)
TACGAAGGCATTGACCCTGCTGTAAGTTGTTATTACCCCGCAGTGGCGGA GAGCCTTTATTTCTTTTTTAAGAAGTATGGCTTCAAGAAACACTCTCCGT CATTAACTTTGAACCCCTTCAGATCCATCAGAAGAGAACTTCACTCAACC TGAAAAATTAGAGCGCTCTAGTTCACGTATGATAGATTACTGATGTTCGT CCGTTCGTTAGTTCGTTAGTTCGTTAGTTCGTTAGTTTTCTCGAGATTGG CTCATTAGTTTTTCCTGATTTTTGGCAAAAAGATGCAAAATAATAATAAT AATAATAATATTTTTCCTCAGAGTTAAAAAGTAATAATAAATATATTTAT AAATATGTTTTAAACTCTATTGAGGTTGGCGCCCGGGGAGCGCCAGGATT TTCTTTCCACCATCATTGTTAGTGCATCTGACTCACTCAGTCCATACAAC TTTGCATCTCTGATGACTTCACGGTATGTCGAATTCGTTACACCTGGTTT CTTTTTTAGACCAGGGTGGTACTGTTCAAAAGTTAACTTTTTTATGTAGC ATTCGTTTGAAGCTCGGGTGCAGTGTGCAATCAAGTTGTATTGCTGATGT TGAAGGTACTTAGAAAGCGAAGGCCGGTCGATAAGGTTTTTGATTTGCTC ATTTGAGTAAAGTAGTTTTTTGAATGCTCCTTTTTTTCCATCATTTGTTG TATATTCAATCAGTTCAGGTTTGCGTTGATTACCTCCTCTGACTAGGTAA CGTAAGAATTTGATATATTGACTCTCATTATGATCGAATTGTTTCTTGGT CAATGTCCAGCACTGACATCCATACATGAGACGGGAGCGAACAAGTGATT CGAGGTATAGAACTCTGGTGTGAAGTTTGATTTTANNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNGGCTTTCGGGTCCGCCTTGTCTGACTCCCGAGGT AGTTTCAAAGATTATAGAACAACCTTTCATTGAACAGTTAGTTTTATCAT ACATATCTTCAATGATCTTGAACATTGTTAGGTTTCCAAAGTATCCTTGG ACAATGGTGAATAGCCAATCTCTACGGATGTGGTAATGTGTAATCATCGA CAGAGTTGCCGTCGACCGGTGAACCATTTTGGCGATTTTCAATACTTCAA TACAATAATTTTCAGCTATGTTAACATGAAGTAGAGGGTTCTCATTTTTT TTGGCTGGGTAAAGCTTTTACCGATAGGACAACATTGAATTTCCACCTTC TGTATATAGCTAAGATTTTGTAATATGTTCTAAGTGTTAAGTGTGTTAAG CGAGAGGGAACTGAAAGTAGTTATGCGTCACCAAAGCACTTAATCTTATA GTTCTAGGTCTCCTGACAACCACGTTTATTTGTTATCACTTTTTCAGTAC CTAGCACAAGCAGAACTAATGGCGTCCAACGAAGCTGCTATTCAACAGAA CCAACAACAACAACAAAGTTCTGCCTCATCTCAACAAAATGCTCAACAGA TTTCTGCTGCTGACCTAGCAAATGCTCTATCCTTTGCTACAATGACACAA GGTAATGGATGGAAACAGTTTTTTCTAAATTTCCGATCAAAGATGGTGGA TATAGCTTGGTAGAACTTGGTAGAACTTCACAGTCGAAATGGACCATGGG TAATCAGGACTGATTGCGCCCCGATAACGGTTTCCCGTTGGTTAGACGCA AAAAAATTCAAAAATGTGGAGCAATAGTAAGTCGTCATTAGCGAGCAGTG GTCCTGATTACCCATTACGCTTTGCAACTGTGAAATGGCCTATGTAAAGA TCGGTCAGTGATACTAACCATGTGATCTTTTTAAACACTTTTTCTTTCAT CTGTTGCTATTATTGTTGAAACAATCCAGGCTGGGAACTTTTTCACAGTC TAGATTTTGATGTTTTCATGGATTATTTCTGATTTTCCGTCCGGTGGTCC TGAATCGACTTTGTGTATATTGAATTGGGAATTAAGGGCATGATGCGGTG GTTTGTAAATGGATTGTGCGTACACTCAACAAAAAGCTAACCCTTGGTTT GCAGTTAATAATGAGACCACGTGTTAAATTTCGAGAAATCTGTACACAGG GTATGTTTTTTCTTTGAGGTTTTCAAGCTTCCACATTTTTGGGCATGCTG CTATGTAAAAATCGCTTGATGGAAATATTCTCAATTTTTCGTTTTTCTAT TTTAGATCCTGCTACACCGAGTAGTTTACCCTTTGGAAGTCCTGGTTCGC AACCCAATCGACAACCACAACCGGATGTAAGAATTGGATTTTCATTTTTT GCTTCATTAAGAACCATACAGGGGGGGGGGACATTTTCAAGTCAAAAAAA GAATTATTGAAAATGTGTGGATGCACTCTGGAAAATTTATTTATTTATTT ATTTATAGTAATATATTTCGCAGGTCTATCGACCTCTATGAAATAATCAT ATTTAACATTTTGTAGGCGCACAGTTGGCCTCTAATCNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCATTATTTTGT TGAATTTCGATTTTTTTTGGTATTTCTTTAGTTTTCGCCATTTTGATGCA TTTCGACGAGCACAACCAGCCAGAAAAAAATTTGACGTCAAATGATTTAT AATGAATTAATTAAAATAATTAATAATTATAAATGGCAATACCTTAAAGG GAGGGTGGACGAAGCAAAATCAGTCTTTTACCCTCTGGAAATTTTAGAAT AACTTTTTACCCTCTTGAAAAAATGATAAAACACTCCCTGGAAATTGTTC TCGGATTACCCCCTAGAAATGTTTGTCCAATCCCCTTTATATGGATATAA AATGGAATGGCCCAATGTATATGATTTCTATTCTGTCCGATTGGACTGCC ACATCTATGCTATTAAATTATGCAAGGGTCTCGGTGCTACACAGTCCCTT TACTGTTCTCCAGTCGAATAAGAGCAATGTTCATCTTTATCTGGCTCCCA GATGCAGAAATTTTCATCCGGCACGCTAAAACTCGGGACAATTTTCAATA TCTGGAAGGTTTAGATTACGGAATTTGGCAAGACCGCGTCAAGGATTTTG CAGTAGGAGGCCTGGTAACCCAGCCCTCGTTCTCGGGGATTGGCGGGTCC AACTGAAATATTTTTAGCTTTGCGAACGAGGGAACCCGACTGGGGATGTG ACACATCAAAGGCTGACCATCATTTCTTTCCGAAGGGAAATTGACCCGCT CCTTTAGAGCTTTAGCGTGCGCGGCCGCCAATCTGTTATTGGAATATTAG ATAACCTTCTTCGCAAATTACCGTTTTGCTCGACCCACTCTCCAAAGTAA AGGCTGGTTTCCACTTACGCGTGCTGCGATTGCACCGTTTGGCTTCAATC CTTTTTGCTTGGAAAAAAGATTACGTCATAATAATGTAGCGCGCGCTCTT TTCAAACATTACGTCAGATCGCGCCAATGGAATTGCTTCATTTTTCTTTT GACCAATAGCGTGGAAGCTTTACCAGATAAAGTGCGGTCGCAGCGCGCGC AAGTGGAGACCGGCCTTAAAAGAACTTAAAATGCATTACCTTTTGTTTTT TTTAGTTCACAGCTGGTATAGAACAAATGAGAACCGAGTTTAATATCTCT GAAGACGTGGCAAGAAGAGCTCTGGTAATGACCAACGGGAATGTGCAAAT GGCTGTTAACCTTGTTTTTGACGGATCTGTCAATTAATCAATGTTTTCAA ATTCGATCCTATTTTTTAAACAAAAGTTAAGTTTTGAATTAATACAATGT AGATTAACTAACAGCCATTGATAGGATGCTTGGATGGCTTGGTCATTCTG GTCATTTTGGACAGTTCTAAAACGTTGCTTGTTCTATCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002125XLOC_002125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003812-exon-sc0000031-1575043694:648447..648467TCONS_00003812-exon-sc0000031-1575043694:648447..648467Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1575043694:646267..646420TCONS_00003812-exon-sc0000031-1575043694:646267..646420Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1575043694:645542..645612TCONS_00003812-exon-sc0000031-1575043694:645542..645612Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1575043694:642877..643162TCONS_00003812-exon-sc0000031-1575043694:642877..643162Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1510915933:648447..648467TCONS_00003812-exon-sc0000031-1510915933:648447..648467Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1510915933:646267..646420TCONS_00003812-exon-sc0000031-1510915933:646267..646420Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1510915933:645542..645612TCONS_00003812-exon-sc0000031-1510915933:645542..645612Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1510915933:642877..643162TCONS_00003812-exon-sc0000031-1510915933:642877..643162Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1491911889:648447..648467TCONS_00003812-exon-sc0000031-1491911889:648447..648467Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1491911889:646267..646420TCONS_00003812-exon-sc0000031-1491911889:646267..646420Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1491911889:645542..645612TCONS_00003812-exon-sc0000031-1491911889:645542..645612Clytia hemisphaericaexon
TCONS_00003812-exon-sc0000031-1491911889:642877..643162TCONS_00003812-exon-sc0000031-1491911889:642877..643162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:642877..648467 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (8.91391 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.968505 0.974921 0 0 0 0 0 0 0 3.15828e-09 9.3936e-08 0 8.91391 0 0 6.18413 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003812 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
50100150200250300350400450500Sequence
Match NameE-valueIdentityDescription
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