TCONS_00003778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003778
Unique NameTCONS_00003778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003778 ID=TCONS_00003778|Name=TCONS_00003778|organism=Clytia hemisphaerica|type=transcript|length=2494bp
GTTTTTCATTTGTCTCGATCAACTGAGGACGTTCAGCACTTACCGTCCTC
AATTTTTGCAGgataGAGTAGCAACCAAAGAGGAACACAAACATCTGCAA
CAATCGACCAATCATGAGATCATTATCAATTGTTACACTCTTTGCTGTAG
TGTGCTGCACTGTAACCTTTGGAACAGTTATCCAACGCAAACGATCATCA
TCTAACAAGAGGATTATATGTTTCTACGCAAACTGGGCTCAATACAGAAA
AGGGCGTGGCAGATTTCTTCCACACCAAATTCCAGCCGACCTATGCACGC
ATATCACCTACGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGGTC
AAAAGACAACGAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAA
GAAGAAAAATCCAGCtttgaaaattatcatttcagTCGGTGGCTGGAAAC
ATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAACACGT
GCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAGTGGA
TGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCCGGCC
CTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGCTGCC
TTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCTCAGG
CCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAGTATT
TAGACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAGAAAA
TTCGCTGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAGATAG
CCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAATCTCG
GCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAACTAT
GGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAAAATA
TACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAGCAAT
GGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTACGCC
TCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTCGATC
GTCCATTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGGATCG
CTATTTGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCATGAA
GGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTATAGC
ATAAAAACATTGAGATGAATCTTAtattatttattcattcattgtaTTTT
TGATCGGGataattttaagcaaatttaGTGTATTTAGAGATctaattgtt
ttattttctttaatacCTAGAAAGGTTTTCCCGTCTGACTTTATCTAGTG
TGTTTCCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTCATGCTTTTA
GAAGCTTCCGATCACGTCTGAACACATCAAATGAGTATACGAATCAATGA
TCGAGTCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTGTTATGTTTT
TGTAGACTTTAGACGATCCATTAACGTGACAAGAAGAGATGAAtgtataa
aatgataaataaaatttgagtttacgaattagaaaataaagtCATTGTTG
TGTAATGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTTACAGACATT
CCTTTTGCAATTGATATGTAAAGTATTTTGATTTTGTGGTAGAATATGAT
TTCCAtttgaataaaatatttgagactttaaaactatttttggtaaattt
cagaaatattatatttttatcaaaattaagaatatatTATTATTTCTATG
TATTACGGCATATTTatgtaatttcaaaatttacagatttcaaaataaga
taaaaaatgaaattgatgaaatattatttttttaaacctttttacCTAAT
ATGTACCTTATCTGCACGATTTTAAACATAACTTAAACATTGGAAATAAA
TAAGTGACATAAATTAAATATACAAAACTTGATTAAATATGATAAATATT
TTGCCGAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCATTGACACAC
TAACTTTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGtcatcttttttt
attcttttcaaatttttcgctttcaaaatttattttaaagcaCTAACATA
ATTAAATATATTCTTAAATTCCATCTGAAACTATAATAAATACATGGAGA
TACCTCCAATGTTGAAAAGAATTGGTatatttatcatatttttctgttta
attgtctccaaaaagggactggatctagtggtatTGATTTGCTACAACCT
CAAGCCATTGGATGGAGACAGTCAAATTTTACACTGGGCCACGTATCAGC
ACCATCCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCTAGG
Run BLAST on NCBI

transcript from alignment at sc0000031:72193..77837-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003778 ID=TCONS_00003778|Name=TCONS_00003778|organism=Clytia hemisphaerica|type=transcript|length=5645bp|location=Sequence derived from alignment at sc0000031:72193..77837- (Clytia hemisphaerica)
GTTTTTCATTTGTCTCGATCAACTGAGGACGTTCAGCACTTACCGTCCTC
AATTTTTGCAGGTCAGAATTGCGGGCTATTCCAAATCACTTTAGTTACCC
CGCTGTCCTAAAAAGTAACAAATAACACATTTTTCTCCGGGTTTTTTTTT
TCATTCGTCTCGATCAACTCAGGACGTTCAGCACTTACCGTCCTCAATTT
TTGCAGGTTAGAATTGCGGGTTATTCCAAATCACTTTAGTTACCACGCTG
TCCTAAAAAGTATCAAATGAAATTTTTTTCACCAAGAACAGCTTCTTTTG
TTAATTTCCTCCTTGAAATTTTTGCATTCCCAACAGGTGTATAGTAGCAA
TAGTACACCTATGTCAAAAATGGTTGTTTGGTGCAAGGTAGATCATATTA
TGTCTGTGCTAAAATCCTATAAATTTGCAAAGGAAGTTGTGATTTTCTTT
AGAGAGCTTTTTGGAAGCGGTTATAGGAGGTTTTGGAGAAGTATAGAGTA
ACACCTTTATCACTGACATGGTGAAACTTTTGAAACTATTGAGGATAAAA
TAAATAACATGTAATTATTTAGGGTCTTTCTTTAAAGGAGTTTTGCAATG
TCACAAGGCGCTGACAAAGTACTATCGGAATGAAGTAATTGCTAGTTCCG
CGACAAGTAACCACGACAAGTAGAGTCTGTTACAAAGTACATGACGGATG
GACAAATTGACTTTTCATACAAACACCCCTTTTTAACAGTCCCGGTGGAA
ATTTTTTTCTCAGTGGGGATAGAAATTCCTATTGAAATCCCAATGACTCT
AGTAATTCTATTGCCAAATTTTTAGATGGGATGGGGTTTGCGGTGGGTCT
GTGACGCAGGCGTGTATACAATTATTTCAGGTGTTTTATCAACTATGGGA
GCAAATAGGTTTGTCATAACAAGCAGAAAAATGACACTAATTCTGAACCT
CTTTTTTTTTAAAGGATAGAGTAGCAACCAAAGAGGAACACAAACATCTG
CAACAATCGACCAATCATGAGATCATTATCAATTGTTACACTCTTTGCTG
TAGTGTGCTGCACTGTAACCTTTGGAACAGTTATCCAACGCAAACGATCA
TCATCTAACAAGAGGATTATATGTTTCTACGCAAACTGGGCTCAATACAG
AAAAGGGCGTGGCAGGTGAGAAAGATTATTAGTTATGCTTCAGCAAAAAG
TACTCACACCTTTTCAAGGTCGTTCTCAAATTCAAACTTTACCTTTGACA
TTACAAAAAGCATAATTTGTAAACATCAAAGAAACTGAAAAAAAACTTCA
CCGTTATTCTCCGCGAAAATTTACGGTGATAAGCTGCAATCTATTGGAAA
AATTTCAACATTTTATCATAGGTCCAATTTTTAAGCTCTCACGATCTTGG
CTCTCACATGCGATAGTTTCCAGATAGAGTGTCTCCGAGTGACCTCCATT
ATTTCCAATATTAGTGTCTTGCATATCTTGCTTAGCAATAAAGCCCGTTA
TCGTTAAAGTGCAGGCCCCTTTTTGAATTTTTGACTGGATTCAAACAGTC
GATGATTCTTGCTCGACTGCAATTCCGTAATATTCACGGAAAATTAGAGA
AAATATATGAAAAGCAACGCCCTCTAAAGAAAAACGAGGTATATGATATC
CCTGGTAAAAATTCTTGATAAGATCTGAAAAGATCGTTAAAGATCTTTAA
AGATCTTTAACAAGTAAGAATCTTAAGAGATCTTTGTAAGATCTTANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAATAGGGTATATAGGGTAGAATTATTATTCTACAAAATATGTAGATTT
CATATTTCTACAGACATCTGTAGAATTACGGCAAATTAGTAGATTGCTAC
ACAACCGAGTCTATATTGTATACACCACAATGAGTAATTTAGTGCTGACA
AGTAAGGCCGAAGAATACAATGAGGTGGAGTATAATACCGGATAAATAAC
GATCTAGACAGTTAGCCTAACTCGTCAGTTAGACTGATTTGAAGTTAAAA
AATCTCATGTGTATCTGTTTTGAGATCTTGTAATTGTCAAANTAAAATTT
AGGTTTCTTATTAAGTTCTTAAGAAGAATCTTATGAAATCTTATGAAATC
TTGCAACCATAAAATAGTTTAAGATTCTTAGCGTTTCTTTTCAAGTTCTT
ATAAAGAGACTTTCCAAATCTTAATTGACAAATATGCAAAGAAACTTTAA
GATTCTTAGCGTTTCGGGAGCGTTTCTTATCAAGTTCTTATAAAGAGACT
TTCCAAATCTTAATTGACAAATATGCAAAGAAACTTTAAGATTCTTAGTG
TTTCTTATAAAGTTCGGGTTAAGANTGGCAGGTGAGAAAGATCTTAGATT
CCTGATTATTAGTTATGTTCTCACACCTTTTCAAGGTCTTGTTCAAATTC
AAACGATGCCTTTGACACTACAAAAGGCATAATTTGTAAACATTAAAGAA
ATTGAAAAAAACTTCACCGTTACTCTCCGCGAAAATTTACGGTGATAAGC
TGCAATCTATTGGAAAAATTTCAACATTTTATCATAGGTCCAATTTTTAA
GGTCTCACAATCTTGGCTCTCACATGCGATAGTTTTCTGATAGTGTCTCC
GAGTGACCCTCAATTATTTCCAATATTAGGGCCTTGTATATCTTGCTTAG
CAATAAAGCCCCATTTCGCTAAACTGCAGTACCCTTTTTGAATTTTTGAC
TGGATTCAAACAGTCGATGATTCTTGCTCGACTACAATTCCGTAATATTC
ACGGAAAATTAGAGAAAACATATGAAAAGGAACGCCCTCTAAAGAAAAAC
GAGGTATGTGATATATTCTCAGACTATGGAAGACACTTATTCTGTGTTTT
AGATTTCTTCCACACCAAATTCCAGCCGACCTATGCACGCATATCACCTA
CGCTCATCTTCAAGTTGACCTCACAACTCACGAGTTGGTCAAAAGACAAC
GAAATGACGAATTTCTGTTGAAAGAGTTGGTTAAACTTAAGAAGAAAAAT
CCAGCTTTGAAAATTATCATTTCAGTCGGTGAGTTCTTCTTCAGAGCTTT
GTTTTGGTGACCCAATGAAGATCTTCTAAAAGTCTTAAGAGCATAAGACT
TCCGTAGCCAACAAAATACTAAGAACAAGTATTATCTTAAGGCATTATGT
CCATAAAAACACTCACAAAATGGTAAAGTTAAGGACATTTTAAGAACAAT
TGAGAAATCTGAAGAATTCAAAACGACTTACCTCATCGTTGTTTTCAAAA
TCAGACGCGACCTTTCACCAAAAAAACATTACTCCTTCAGTACTGTGAGA
AAACTGAAATTCAAGGATTGTGTCAGCTTCAAACGCAATTTTCTCGGCGG
TCAATCTTTGATCAGTGGTCAATTAAGGATCGATATTCGATCTTCCTCTT
TTCGACATTTTGACGCACCACCCACCCAGTAAACCAAGTACCCCTGGCTC
TTAAGTTATTTTTTATAACATTTTTATTTACGATTTCAGGTGGCTGGAAA
CATGAATATAAGCCACGTTTCTCCAAAATGGTCCAAAATGAAAGAACACG
TGCTATTTTCATCCAATCAGTGCTCAAATGGATTCAAAAAACAGAAGTGG
ATGGTCTGTCGATCGATTGGGAGTACCCTACGAAGCGAGGTACTTCCGGC
CCTGGAGATAAGCATAGGTACACATTGCTGTTAAAGGAGCTTAGAGCTGC
CTTTGATGAAGAAGAGCGTCCGCTTACGTTGAGCGCTTCTGTGTCCTCAG
GCCGCAAGAAAATCGACACAGTTTACGAGCACAAGAAGTTTATCAAGTAT
TTAGACTGGGTCAATGTGATGGCATATGCTTTACATGGAGCTTGGAGAAA
ATTCGCTGGTCATCACACAACAATGACTGGAGCAACCAATGTTGAAGATA
GCCTAAACGCTTGGCAAGAAAAAGGAATCCCAGATGAGAAAATCAATCTC
GGCGTTGCAACCTATGGTCGTACGTTCACACTTAAAGATCCTACCAACTA
TGGTCTAGGAGCGCCAGTCACAAACCCTGCTCACGGAAAACCAGGAAAAT
ATACCAGAATCAAAGGAGCTTTATCCTACTACGAGTTTTGTGATCAGCAA
TGGGACCATAAAATTCCCTCATACGACAGCAAAGCCCGAAAACCTTACGC
CTCAAGAGGTGATCAATGGATTGGCTATGAATCACCAAGAAGCATTCGAT
CGTCCATTGCCTACTTGATGCAGAAGAACAACAACCGATTGGGTGGGATC
GCTATTTGGAAATTGGGATATGATGACTTCACTGGTACTTTTTGTCATGA
AGGCAAATTTCCACTCGTCAATGCAGCCCGGCAAGGAGTTTATGGTATAG
CATAAAAACATTGAGATGAATCTTATATTATTTATTCATTCATTGTATTT
TTGATCGGGATAATTTTAAGCAAATTTAGTGTATTTAGAGATCTAATTGT
TTTATTTTCTTTAATACCTAGAAAGGTTTTCCCGTCTGACTTTATCTAGT
GTGTTTCCATTGTTAATTTTCTGAGCTTGTCTTGTTCTGGTCATGCTTTT
AGAAGCTTCCGATCACGTCTGAACACATCAAATGAGTATACGAATCAATG
ATCGAGTCTTTACTGGCCTTGAGAGATTTTAGGTTGATATTGTTATGTTT
TTGTAGACTTTAGACGATCCATTAACGTGACAAGAAGAGATGAATGTATA
AAATGATAAATAAAATTTGAGTTTACGAATTAGAAAATAAAGTCATTGTT
GTGTAATGATCGACGAATTTCTTCCCTTCTTCGTCTCATCTTACAGACAT
TCCTTTTGCAATTGATATGTAAAGTATTTTGATTTTGTGGTAGAATATGA
TTTCCATTTGAATAAAATATTTGAGACTTTAAAACTATTTTTGGTAAATT
TCAGAAATATTATATTTTTATCAAAATTAAGAATATATTATTATTTCTAT
GTATTACGGCATATTTATGTAATTTCAAAATTTACAGATTTCAAAATAAG
ATAAAAAATGAAATTGATGAAATATTATTTTTTTAAACCTTTTTACCTAA
TATGTACCTTATCTGCACGATTTTAAACATAACTTAAACATTGGAAATAA
ATAAGTGACATAAATTAAATATACAAAACTTGATTAAATATGATAAATAT
TTTGCCGAATTTTTGTAACAAACGGTCGTTTCTTTCAATCCATTGACACA
CTAACTTTTTGAGTGCAGTGAAAAAGACTAGGGAAATTGTCATCTTTTTT
TATTCTTTTCAAATTTTTCGCTTTCAAAATTTATTTTAAAGCACTAACAT
AATTAAATATATTCTTAAATTCCATCTGAAACTATAATAAATACATGGAG
ATACCTCCAATGTTGAAAAGAATTGGTATATTTATCATATTTTTCTGTTT
AATTGTCTCCAAAAAGGGACTGGATCTAGTGGTATTGATTTGCTACAACC
TCAAGCCATTGGATGGAGACAGTCAAATTTTACACTGGGCCACGTATCAG
CACCATCCAGTCTACCACAAAGCTTTAAGTGGCCCGTGGGCTAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002105XLOC_002105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003778-exon-sc0000031-1575043694:77777..77837TCONS_00003778-exon-sc0000031-1575043694:77777..77837Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1575043694:76673..76873TCONS_00003778-exon-sc0000031-1575043694:76673..76873Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1575043694:74710..74885TCONS_00003778-exon-sc0000031-1575043694:74710..74885Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1575043694:72193..74248TCONS_00003778-exon-sc0000031-1575043694:72193..74248Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1510915933:77777..77837TCONS_00003778-exon-sc0000031-1510915933:77777..77837Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1510915933:76673..76873TCONS_00003778-exon-sc0000031-1510915933:76673..76873Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1510915933:74710..74885TCONS_00003778-exon-sc0000031-1510915933:74710..74885Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1510915933:72193..74248TCONS_00003778-exon-sc0000031-1510915933:72193..74248Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1491911889:77777..77837TCONS_00003778-exon-sc0000031-1491911889:77777..77837Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1491911889:76673..76873TCONS_00003778-exon-sc0000031-1491911889:76673..76873Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1491911889:74710..74885TCONS_00003778-exon-sc0000031-1491911889:74710..74885Clytia hemisphaericaexon
TCONS_00003778-exon-sc0000031-1491911889:72193..74248TCONS_00003778-exon-sc0000031-1491911889:72193..74248Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031supercontigsc0000031:72193..77837 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	1.6996e-09	3.19476e-09	8.34879e-10	0	0	0	6.06137e-10	1.84812	0.0284462	1.05026	0	2.1288	1.62405	65.2235	50.4986	1.41898	1.09055	9.66115	11.7951	2.01676	1.89946	3.20797e-09	0.422076	2.46346e-08	3.14173e-07
Blast
[Close]
BLAST of TCONS_00003778 vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 9.633e-82
Identity = 144/375 (38.40%), Postives = 218/375 (58.13%), Query Frame = 3 
Query:  201 SNKRIICFYANWAQYRKGRGRFLPHQIPADLCTHITYAHLQVDLTTHELVKRQRNDEFXXXXXXXXXXXNPALKIIISVGGWKHEYKPRFSKMVQNERTRAIFIQSVLKWIQKTEVDGLSIDWEYPTKRGTSGPGDKHRYTLLLKELRAAFDEEERP-----LTLSASVSSGRKKIDTVYEHKKFIKYLDWVNVMAYALHGAWRKFAGHHTTM------TGAT---NVEDSLNAWQEKGIPDEKINLGVATYGRTFTLKDPTNYGLGAPVTNPAHGKPGKYTRIKGALSYYEFCDQQWDHKIPSYDSKARKPYASRGDQWIGYESPRSIRSSIAYLMQKNNNRLGGIAIWKLGYDDFTGTFCHEGKFPLVNAARQ 1283
            S  +++C++ NWAQYR+G  RFLP  +   LCTH+ YA     +T H+L   + NDE L +E   LKK NP LK ++++GGW    + +F+ MV     R  F+ S +++++K   DGL +DWEYP  +G+    DK R+T L+++L  AF +E +      L LSA+V +G+  +D  YE  K  + LD+VN+MAY  HG+W K  GH++ +      +GA    NV+ ++  W +KG P  K+ LG+ TYGR+FTL   ++  +GAP T    G PG +T+  G L+YYE C   W           + PY  R +QW+G++   S ++ ++YL QK    LGG  +W L  DDF G  C++G++PL+   RQ
Sbjct:   20 SAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAV-DKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPAT--GSGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKG---LGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 383
The following BLAST results are available for this feature:
BLAST of TCONS_00003778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHIT19.633e-8238.40Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV... [more]
back to top