TCONS_00003440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003440
Unique NameTCONS_00003440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003440 ID=TCONS_00003440|Name=TCONS_00003440|organism=Clytia hemisphaerica|type=transcript|length=598bp
CAACAGAATCACCAAAGACAACTTATCAACCACCAACATTGAACCCGCTT
GATAAATGTCAATTGCCAGATGTTGCCGTCAGTCGGATCATTTCTGGTCG
AGACGCCAAGCCTGGACAATTCCCATGGCAAGTTGCAATGTATGTTAACG
GCCATTTCAGTTGTGGCGGATCTATCTTGAAGCCTGATTGGTTGATCACG
GCTGCACATTGTCTCCAGGGATTGCAACCGAGTCATAATATCACTTTTGT
TGCAGGTGAATTGGATCGGTCAGTATCCTCTGGCCATGAACAAACATCAG
AAATCGAGATGCCTCACATACATCCCCATTATGAAATGCCAATCTCTTTG
AACAATGATATCGCACTGGTTAAATTAAAAAGACCTTTCAAATTCAACCG
GTTCGTTCAACCAGTTTGTATTCCTCAGCAACACGAAGAAATTGCACCTG
GATCCAAGTGCATCCTGTCAGgttgGGGTAGAACAAAGAAGGACGGTGAG
TCACCAAATGTTTTAAAGTATACAAAGCTGTATGTGGTAAACCAAACACA
ATGCGTGGCGTGGAATCGACGAATCACTAACTATATGATGTGTGGGTA
Run BLAST on NCBI

protein sequence of TCONS_00003440-protein

>TCONS_00003440-protein ID=TCONS_00003440-protein|Name=TCONS_00003440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
TESPKTTYQPPTLNPLDKCQLPDVAVSRIISGRDAKPGQFPWQVAMYVNG
HFSCGGSILKPDWLITAAHCLQGLQPSHNITFVAGELDRSVSSGHEQTSE
IEMPHIHPHYEMPISLNNDIALVKLKRPFKFNRFVQPVCIPQQHEEIAPG
SKCILSGWGRTKKDGESPNVLKYTKLYVVNQTQCVAWNRRITNYMMCG
Run BLAST on NCBI

transcript from alignment at sc0000028:558045..560682+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003440 ID=TCONS_00003440|Name=TCONS_00003440|organism=Clytia hemisphaerica|type=transcript|length=2638bp|location=Sequence derived from alignment at sc0000028:558045..560682+ (Clytia hemisphaerica)
CAACAGAATCACCAAAGACAACTTATCAACCACCAACATTGAACCCGCTT
GGTATTTATCgtctaaaaattgttataaaacacttgcgaaatttgtatgg
gattgggcttttccagaaaatctttttaaaccCTCTGTAGGATATTGATT
TCTCGAactatcgaaccccctggatatcctactttattagtaaagacccc
tggatattcactcttaaaaatatgctcaactcTGCGGATATCCTCTCGTA
TAAAGATGCTTtctatttctggaaaagtctATTTAAGGAAGCAGATTCAA
AACTGTTCTTAATGCTCTTGACCTCTTTCGAAGAAAATAAGCGTTTCTGT
TATCTGATTTTAGCCAGGTTTTTATCCGCAACCTTAACttgtttaaccct
ttcagttaaaacaaaaaatgaagtttcgCAGCTAACGAGAGTTCCGGAAC
CTCATAGTTATGGAGATATAGCTCGTCAAAGTAAAGTTCCGGAGGTACTC
GCTATGCGGATGTGTGAGACTGAAAAGGTTTTTATATCAGAATCTTTATT
TGAGAAAGTTTGACCATCTTATCCATTGTTACCATCACCATATAATTTTG
TCTTCCTCTGCTTACACAACAGATAAATGTCAATTGCCAGATGTTGCCGT
CAGTCGGATCATTTCTGGTCGAGACGCCAAGCCTGGACAATTCCCATGGC
AAGTTGCAATGTATGTTAACGGCCATTTCAGTTGTGGCGGATCTATCTTG
AAGCCTGATTGGTTGATCACGGCTGCACATTGTCTCCAGGGATTGCAACC
GAGTCATAATATCACTTTTGTTGCAGGTAGCGAATTTATTTGAAACAAAT
CTTCTTATTGTAGCCATAGAGAATTTCATCGTAATAAGAAAGATCTTCCA
GATATCCAAATCTCCGGTCACTGTTAAGCGTGTGTTAGGGCTTGAAAATC
TCACCTGCTTCTACTATTAATAACATTAGTTCCTTAGTATCTTCCTTATG
AAACACCAATAAGCTGCCAATTCTCGCACCCACATTCTCCCTTTACATGA
AAATTGTTTGAGTATGAATTTTCCAGCAGGGTCAAATTACGCTATGTCTT
AATTAATTGTATTGACAGGCTATAGAATATAGACATTTTAACCCCTAGTA
AACTTGAACCACATGTCCTTGCTTGTTTGTTTTGGATTAgtttaggcttc
tgctcatcctctaacGAAAGAATTTCTTGTAAGGAGTACAGTTGACTGGA
ACTCGAAGGGGAAGAATTTCTTGTAAGGAGTACAGTTGACTCGAACTCGA
AGGGGAATTCAATTTGTACGAATAACGGAGAATTGTTTAGAAATTAAAGA
AAGCGTTTTAAGAGGAATCCTCTTTGACAGAGACTGataattagttcgaa
ttatagaaaaattggAATATTAGAAGTTCGAAATTTACGAGATTTAACTG
CATATCTATAGAATTCTGAAAATTAGATTAGGGTTGATTGCTTATTGGCA
TGCTAACATATTTTTCCAGGTGAATTGGATCGGTCAGTATCCTCTGGCCA
TGAACAAACATCAGAGATCTCTTTAAGTAGTGTAGGATTACCACCACACC
CTATGTTTTAAGTTTGACTATCATTCACTAATCCTGAACCGACTTTTTAC
TATTTCTCTTTACTTTGGTTACAGGTGAATTGGATCGATCAGTATCATCT
GGCTATGAACAAACATCAGAAATCGAGATGCCTCACATACATCCCCATTA
TGAAATGCCAATCTCTTTGAACAATGATATCGCACTGGTTAAATTAAAAA
GACCTTTCAAATTCAACCGGTTCGTTCAACCAGTTTGTATTCCTCAGCAA
CACGAAGAAATTGCACCTGGATCCAAGTGCATCCTGTCAGGTGAAATATT
GCGTCTGCATTTTTAGGCTACACGTAtcctttttgatcagtttgatatAT
TTTTAACTCTCGGAtaggaattttatacacgatacgcatgacgcatcccc
tatatcaaaacatatcagctGGGATACGTTCAGTCTACTGAATTAAAAAA
ACGGAGTTTTCAGATTATACAGGTTAAGACCATTTCTCGAAACAAAATGC
ATCAATTAAGGTTTGTTTTAGGGTTTTCAACAGTTTTGAACAGTAGATTA
GCTTATACCATAGACATATGATCATTATCATATGTCTATGCTTATACTTA
CCTCACTTATCATCCTTTTGGTCTATTACGTTCTTATGTGTTTTGCTTTA
CATtgaagtgacgtcattttttttgaaaaagtaataaataaCTTGAAGTA
ACGTCGATTTCTCCACGATGatcctgggggggggggtatttgTAAAAAGT
TACAGACTGAACAGTGTTAAGACCGTCTTATTCATTTCGGACCAACACGA
AACTGTAAATTATTTTACATGGTTTGAGAGGTTTTAATCCAGTGTTCTTG
TTTAACTGGAGAAATTTTACAGAAAGTCCTAGGTCAAaactcataatttt
ttcttttttaggttgGGGTAGAACAAAGAAGGACGGTGAGTCACCAAATG
TTTTAAAGTATACAAAGCTGTATGTGGTAAACCAAACACAATGCGTGGCG
TGGAATCGACGAATCACTAACTATATGATGTGTGGGTA

Coding sequence (CDS) from alignment at sc0000028:558045..560682+

>TCONS_00003440 ID=TCONS_00003440|Name=TCONS_00003440|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at sc0000028:558045..560682+ (Clytia hemisphaerica)
ACAGAATCACCAAAGACAACTTATCAACCACCAACATTGAACCCGCTTGA
TAAATGTCAATTGCCAGATGTTGCCGTCAGTCGGATCATTTCTGGTCGAG
ACGCCAAGCCTGGACAATTCCCATGGCAAGTTGCAATGTATGTTAACGGC
CATTTCAGTTGTGGCGGATCTATCTTGAAGCCTGATTGGTTGATCACGGC
TGCACATTGTCTCCAGGGATTGCAACCGAGTCATAATATCACTTTTGTTG
CAGGTGAATTGGATCGGTCAGTATCCTCTGGCCATGAACAAACATCAGAA
ATCGAGATGCCTCACATACATCCCCATTATGAAATGCCAATCTCTTTGAA
CAATGATATCGCACTGGTTAAATTAAAAAGACCTTTCAAATTCAACCGGT
TCGTTCAACCAGTTTGTATTCCTCAGCAACACGAAGAAATTGCACCTGGA
TCCAAGTGCATCCTGTCAGgttgGGGTAGAACAAAGAAGGACGGTGAGTC
ACCAAATGTTTTAAAGTATACAAAGCTGTATGTGGTAAACCAAACACAAT
GCGTGGCGTGGAATCGACGAATCACTAACTATATGATGTGTGGGACAGAA
TCACCAAAGACAACTTATCAACCACCAACATTGAACCCGCTTGATAAATG
TCAATTGCCAGATGTTGCCGTCAGTCGGATCATTTCTGGTCGAGACGCCA
AGCCTGGACAATTCCCATGGCAAGTTGCAATGTATGTTAACGGCCATTTC
AGTTGTGGCGGATCTATCTTGAAGCCTGATTGGTTGATCACGGCTGCACA
TTGTCTCCAGGGATTGCAACCGAGTCATAATATCACTTTTGTTGCAGGTG
AATTGGATCGGTCAGTATCCTCTGGCCATGAACAAACATCAGAAATCGAG
ATGCCTCACATACATCCCCATTATGAAATGCCAATCTCTTTGAACAATGA
TATCGCACTGGTTAAATTAAAAAGACCTTTCAAATTCAACCGGTTCGTTC
AACCAGTTTGTATTCCTCAGCAACACGAAGAAATTGCACCTGGATCCAAG
TGCATCCTGTCAGgttgGGGTAGAACAAAGAAGGACGGTGAGTCACCAAA
TGTTTTAAAGTATACAAAGCTGTATGTGGTAAACCAAACACAATGCGTGG
CGTGGAATCGACGAATCACTAACTATATGATGTGTGGGACAGAATCACCA
AAGACAACTTATCAACCACCAACATTGAACCCGCTTGATAAATGTCAATT
GCCAGATGTTGCCGTCAGTCGGATCATTTCTGGTCGAGACGCCAAGCCTG
GACAATTCCCATGGCAAGTTGCAATGTATGTTAACGGCCATTTCAGTTGT
GGCGGATCTATCTTGAAGCCTGATTGGTTGATCACGGCTGCACATTGTCT
CCAGGGATTGCAACCGAGTCATAATATCACTTTTGTTGCAGGTGAATTGG
ATCGGTCAGTATCCTCTGGCCATGAACAAACATCAGAAATCGAGATGCCT
CACATACATCCCCATTATGAAATGCCAATCTCTTTGAACAATGATATCGC
ACTGGTTAAATTAAAAAGACCTTTCAAATTCAACCGGTTCGTTCAACCAG
TTTGTATTCCTCAGCAACACGAAGAAATTGCACCTGGATCCAAGTGCATC
CTGTCAGgttgGGGTAGAACAAAGAAGGACGGTGAGTCACCAAATGTTTT
AAAGTATACAAAGCTGTATGTGGTAAACCAAACACAATGCGTGGCGTGGA
ATCGACGAATCACTAACTATATGATGTGTGGGACAGAATCACCAAAGACA
ACTTATCAACCACCAACATTGAACCCGCTTGATAAATGTCAATTGCCAGA
TGTTGCCGTCAGTCGGATCATTTCTGGTCGAGACGCCAAGCCTGGACAAT
TCCCATGGCAAGTTGCAATGTATGTTAACGGCCATTTCAGTTGTGGCGGA
TCTATCTTGAAGCCTGATTGGTTGATCACGGCTGCACATTGTCTCCAGGG
ATTGCAACCGAGTCATAATATCACTTTTGTTGCAGGTGAATTGGATCGGT
CAGTATCCTCTGGCCATGAACAAACATCAGAAATCGAGATGCCTCACATA
CATCCCCATTATGAAATGCCAATCTCTTTGAACAATGATATCGCACTGGT
TAAATTAAAAAGACCTTTCAAATTCAACCGGTTCGTTCAACCAGTTTGTA
TTCCTCAGCAACACGAAGAAATTGCACCTGGATCCAAGTGCATCCTGTCA
GgttgGGGTAGAACAAAGAAGGACGGTGAGTCACCAAATGTTTTAAAGTA
TACAAAGCTGTATGTGGTAAACCAAACACAATGCGTGGCGTGGAATCGAC
GAATCACTAACTATATGATGTGTGGGACAGAATCACCAAAGACAACTTAT
CAACCACCAACATTGAACCCGCTTGATAAATGTCAATTGCCAGATGTTGC
CGTCAGTCGGATCATTTCTGGTCGAGACGCCAAGCCTGGACAATTCCCAT
GGCAAGTTGCAATGTATGTTAACGGCCATTTCAGTTGTGGCGGATCTATC
TTGAAGCCTGATTGGTTGATCACGGCTGCACATTGTCTCCAGGGATTGCA
ACCGAGTCATAATATCACTTTTGTTGCAGGTGAATTGGATCGGTCAGTAT
CCTCTGGCCATGAACAAACATCAGAAATCGAGATGCCTCACATACATCCC
CATTATGAAATGCCAATCTCTTTGAACAATGATATCGCACTGGTTAAATT
AAAAAGACCTTTCAAATTCAACCGGTTCGTTCAACCAGTTTGTATTCCTC
AGCAACACGAAGAAATTGCACCTGGATCCAAGTGCATCCTGTCAGgttgG
GGTAGAACAAAGAAGGACGGTGAGTCACCAAATGTTTTAAAGTATACAAA
GCTGTATGTGGTAAACCAAACACAATGCGTGGCGTGGAATCGACGAATCA
CTAACTATATGATGTGTGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001918XLOC_001918Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003440-exon-sc0000028-1491911889:558045..558095TCONS_00003440-exon-sc0000028-1491911889:558045..558095Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1510915933:558045..558095TCONS_00003440-exon-sc0000028-1510915933:558045..558095Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1575043694:558045..558095TCONS_00003440-exon-sc0000028-1575043694:558045..558095Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1491911889:558667..558870TCONS_00003440-exon-sc0000028-1491911889:558667..558870Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1510915933:558667..558870TCONS_00003440-exon-sc0000028-1510915933:558667..558870Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1575043694:558667..558870TCONS_00003440-exon-sc0000028-1575043694:558667..558870Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1491911889:559564..559603TCONS_00003440-exon-sc0000028-1491911889:559564..559603Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1510915933:559564..559603TCONS_00003440-exon-sc0000028-1510915933:559564..559603Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1575043694:559564..559603TCONS_00003440-exon-sc0000028-1575043694:559564..559603Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1491911889:559759..559934TCONS_00003440-exon-sc0000028-1491911889:559759..559934Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1510915933:559759..559934TCONS_00003440-exon-sc0000028-1510915933:559759..559934Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1575043694:559759..559934TCONS_00003440-exon-sc0000028-1575043694:559759..559934Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1491911889:560556..560682TCONS_00003440-exon-sc0000028-1491911889:560556..560682Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1510915933:560556..560682TCONS_00003440-exon-sc0000028-1510915933:560556..560682Clytia hemisphaericaexon
TCONS_00003440-exon-sc0000028-1575043694:560556..560682TCONS_00003440-exon-sc0000028-1575043694:560556..560682Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003440-proteinTCONS_00003440-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000028supercontigsc0000028:558045..560682 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.456012	0	0.309792	0.101028	0.0614958	0.0971896	0.117255	0	0.0384273	0.0475984	0.184801	0.0607403	6.06559	6.55114	8.75213	22.7862	16.6371	17.4033	27.1461	22.015	42.9435	52.6454	74.5967	110.471	79.8048	82.8469	0.125057	0.200196	0	0.0515674
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001314Peptidase_S1A
IPR001254Trypsin_dom
IPR018114TRYPSIN_HIS
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00003440 vs. Swiss-Prot (Human)
Match: CTRB1 (Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.603e-35
Identity = 67/187 (35.83%), Postives = 113/187 (60.43%), Query Frame = 3 
Query:   57 CQLPDV-----AVSRIISGRDAKPGQFPWQVAMY-VNGHFSCGGSILKPDWLITAAHCLQGLQPSHNITFVAGELDRSVSSGHEQTSEIEMPHIHPHYEMPISLNNDIALVKLKRPFKFNRFVQPVCIPQQHEEIAPGSKCILSGWGRTKKDG-ESPNVLKYTKLYVVNQTQC-VAWNRRITNYMMC 593
            C +P +      +SRI++G DA PG +PWQV++    G   CGGS++  DW++TAAHC  G++ S  +  VAGE D+     + Q  +I     +P + + +++NNDI L+KL  P +F++ V  VC+P   ++   G+ C  +GWG+TK +  ++P+ L+   L +++  +C  +W RRIT+ M+C
Sbjct:   19 CGVPAIHPVLSGLSRIVNGEDAVPGSWPWQVSLQDKTGFHFCGGSLISEDWVVTAAHC--GVRTSDVV--VAGEFDQGSDEENIQVLKIAKVFKNPKFSI-LTVNNDITLLKLATPARFSQTVSAVCLPSADDDFPAGTLCATTGWGKTKYNANKTPDKLQQAALPLLSNAECKKSWGRRITDVMIC 200
The following BLAST results are available for this feature:
BLAST of TCONS_00003440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTRB11.603e-3535.83Chymotrypsinogen B OS=Homo sapiens GN=CTRB1 PE=2 S... [more]
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