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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003516 ID=TCONS_00003516|Name=TCONS_00003516|organism=Clytia hemisphaerica|type=transcript|length=1113bp
TTGGTACGAGTGTCAAGAAAAGCTGAAATACAGTATTTGGCGTCAAAACA
GCTTCCTTTGAATGTTCATATCGTCCACATTACATAATAAGATAAACAAT
AATCGCAGCGTAGCTGCATCATACAATATGGTTCAAGGCTTACGAAAATC
AAAGTATATAATCGAAAAACATTCTGAACAAGTTATTGAACTTCTGGCAA
AGCATTTGTTACCAACGTACATGAAAAGGTTAGGTATCACTCGTGaacaa
caaaagaaagattTAATTGAAGTTGAAGCCATCTTGGATCCTGGACATTT
GAAgagagaaatatttgaaaaggcTTCGTATGTAGCTTTGGACAAATCAG
ATAAAGTGGTTGCATGctcattaaattattttataagCAAAGAAGAATGG
TTGAAATATTTTGTAGAGCCTAACAAATCCATTACACAAAATACAAATTA
CAGTAAACACATTCGAAAATATTGTCAGCAACAATACGATCTATATCATG
ATGTTATTGATCTAACTTATGATAAGTATAATTTACAGACCATACTTTAC
CTTGAAGATGGAGTTACATTGCCTGAATATCGCGGTCTAAGGATAGCACA
GTGGTTGCAAAGAACAGTTTTAGGGGACTTTGGTGAGCAGTATGGGATAT
TAGGTGAAGGTATGGTGCCTATGGACCGAATCAATGCTGGGAAAGTGAAT
CCAGCTTTCAATGCTTggcgtgaaaatggttttctCACAGTGAAAGAGAT
TGTTACTCATGATAAGGTCATGGTACCAGTATGGTTTAGGCCTCCAAAAG
TAAATTAACTGTCAATTAGGATATTATACACATAttgataaatttctttt
cattgtACGATAGAATTCTCAATCCTTAAATTATTCATTGAATGAATtaa
acaattcatgatattcatgatgtaatcttttatacggaagcacacaaaat
aactcggaactagtggcaaaatttgccactagtcttttgttattttgcca
ctagctccgggttatctcgggtgcttccgtatgaatgattacgtcatgaa
tatcatgaattaaataatttaatcttagatatattatttttttagcaaac
aTTACCTTGTACT Run BLAST on NCBI protein sequence of TCONS_00003516-protein >TCONS_00003516-protein ID=TCONS_00003516-protein|Name=TCONS_00003516-protein|organism=Clytia hemisphaerica|type=polypeptide|length=248bp
MFISSTLHNKINNNRSVAASYNMVQGLRKSKYIIEKHSEQVIELLAKHLL
PTYMKRLGITREQQKKDLIEVEAILDPGHLKREIFEKASYVALDKSDKVV
ACSLNYFISKEEWLKYFVEPNKSITQNTNYSKHIRKYCQQQYDLYHDVID
LTYDKYNLQTILYLEDGVTLPEYRGLRIAQWLQRTVLGDFGEQYGILGEG
MVPMDRINAGKVNPAFNAWRENGFLTVKEIVTHDKVMVPVWFRPPKVN Run BLAST on NCBI transcript from alignment at sc0000028:121847..122959 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00003516 ID=TCONS_00003516|Name=TCONS_00003516|organism=Clytia hemisphaerica|type=transcript|length=1113bp|location=Sequence derived from alignment at sc0000028:121847..122959 (Clytia hemisphaerica)
AGTACAAGGTAAtgtttgctaaaaaaataatatatctaagattaaattat
ttaattcatgatattcatgacgtaatcattcatacggaagcacccgagat
aacccggagctagtggcaaaataacaaaagactagtggcaaattttgcca
ctagttccgagttattttgtgtgcttccgtataaaagattacatcatgaa
tatcatgaattgtttaATTCATTCAATGAATAATTTAAGGATTGAGAATT
CTATCGTacaatgaaaagaaatttatcaaTATGTGTATAATATCCTAATT
GACAGTTAATTTACTTTTGGAGGCCTAAACCATACTGGTACCATGACCTT
ATCATGAGTAACAATCTCTTTCACTGTGagaaaaccattttcacgccAAG
CATTGAAAGCTGGATTCACTTTCCCAGCATTGATTCGGTCCATAGGCACC
ATACCTTCACCTAATATCCCATACTGCTCACCAAAGTCCCCTAAAACTGT
TCTTTGCAACCACTGTGCTATCCTTAGACCGCGATATTCAGGCAATGTAA
CTCCATCTTCAAGGTAAAGTATGGTCTGTAAATTATACTTATCATAAGTT
AGATCAATAACATCATGATATAGATCGTATTGTTGCTGACAATATTTTCG
AATGTGTTTACTGTAATTTGTATTTTGTGTAATGGATTTGTTAGGCTCTA
CAAAATATTTCAACCATTCTTCTTTGcttataaaataatttaatgagCAT
GCAACCACTTTATCTGATTTGTCCAAAGCTACATACGAAgccttttcaaa
tatttctctcTTCAAATGTCCAGGATCCAAGATGGCTTCAACTTCAATTA
aatctttcttttgttgttCACGAGTGATACCTAACCTTTTCATGTACGTT
GGTAACAAATGCTTTGCCAGAAGTTCAATAACTTGTTCAGAATGTTTTTC
GATTATATACTTTGATTTTCGTAAGCCTTGAACCATATTGTATGATGCAG
CTACGCTGCGATTATTGTTTATCTTATTATGTAATGTGGACGATATGAAC
ATTCAAAGGAAGCTGTTTTGACGCCAAATACTGTATTTCAGCTTTTCTTG
ACACTCGTACCAA Coding sequence (CDS) from alignment at sc0000028:121847..122959 >TCONS_00003516 ID=TCONS_00003516|Name=TCONS_00003516|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0000028:121847..122959 (Clytia hemisphaerica)
TTAATTTACTTTTGGAGGCCTAAACCATACTGGTACCATGACCTTATCAT
GAGTAACAATCTCTTTCACTGTGagaaaaccattttcacgccAAGCATTG
AAAGCTGGATTCACTTTCCCAGCATTGATTCGGTCCATAGGCACCATACC
TTCACCTAATATCCCATACTGCTCACCAAAGTCCCCTAAAACTGTTCTTT
GCAACCACTGTGCTATCCTTAGACCGCGATATTCAGGCAATGTAACTCCA
TCTTCAAGGTAAAGTATGGTCTGTAAATTATACTTATCATAAGTTAGATC
AATAACATCATGATATAGATCGTATTGTTGCTGACAATATTTTCGAATGT
GTTTACTGTAATTTGTATTTTGTGTAATGGATTTGTTAGGCTCTACAAAA
TATTTCAACCATTCTTCTTTGcttataaaataatttaatgagCATGCAAC
CACTTTATCTGATTTGTCCAAAGCTACATACGAAgccttttcaaatattt
ctctcTTCAAATGTCCAGGATCCAAGATGGCTTCAACTTCAATTAaatct
ttcttttgttgttCACGAGTGATACCTAACCTTTTCATGTACGTTGGTAA
CAAATGCTTTGCCAGAAGTTCAATAACTTGTTCAGAATGTTTTTCGATTA
TATACTTTGATTTTCGTAAGCCTTGAACCATATTGTATGATGCAGCTACG
CTGCGATTATTGTTTATCTTATTATGTAATGTGGACGATATGAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00003516-exon-sc0000028-1491911889:121847..122959 | TCONS_00003516-exon-sc0000028-1491911889:121847..122959 | Clytia hemisphaerica | exon |
| TCONS_00003516-exon-sc0000028-1510915933:121847..122959 | TCONS_00003516-exon-sc0000028-1510915933:121847..122959 | Clytia hemisphaerica | exon |
| TCONS_00003516-exon-sc0000028-1575043694:121847..122959 | TCONS_00003516-exon-sc0000028-1575043694:121847..122959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000028 | supercontig | sc0000028:121847..122959 . |
Blast
The following BLAST results are available for this feature:
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