TCONS_00003349 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003349
Unique Name	TCONS_00003349
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2322

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000026:638006..653154-

transcript sequence

>TCONS_00003349 ID=TCONS_00003349|Name=TCONS_00003349|organism=Clytia hemisphaerica|type=transcript|length=2322bp
TGATGCACTGCCACATTCGTTACAATAAACGTATGGAACAAAGAGTTGTA
GAAGCGGGTCGACATCAgctcaaatattttgataaattgaaGAAGGAGTT
CAATCTGATCAGATCGTTATATCTTGCTTGCCACGGGCGAGTACAGGCTA
TCGATGAGTTGGAAATGTGTATATCCAGGCTAAGGTTCCCGACACATTAC
GAGGAGATGACAGAAGGTTTTTGTGAAGCCAGAAATGATATTGTTAGGCT
AGGCGAGGTTAGCCAGACGCGTTACGCGCTCTTATCCGACCGCGTCACGG
CAAGCGAAGAGTTAAAATTGAAGAACGGGCAAATGGCTTATTTACAAAAT
CTTGCAAAGGTGCAAGAGGATAACAATGGTTCAAATCCAGAACCATGTCC
TATTTGTGTCTTCCCACTGGGCAGTGAAtGGGCAGTAATGACTTGTGGTC
ACAGTGTTTGCTGTAAATGTATGACTACCCTTCAAAAGAGAAGCAATTAC
AAACGAGCTGCTATTCAGTGTCCCATGTGTCGTGCACAAAGCAAACTAAC
CGCCATCTCAATCGTCACCGCAAAACCGGCTGCCGTGAAGTCGACCGATA
CTGATCGAGCAAGCAGTGATAGTAATGATGATATACTCGACGCTAACATT
TCAGTTCAAGGAAACTTTTCGACGAAAATCGAAGCTGTCGTTCGCCGTAT
CTTATGGATCCAAATTGAACAACCAAAAGCCAAGACTCTTGTTTTCTCCA
CGTGGACAAACGTACTAAAAGTCATCAGCCAAGCTCTCAGTGTCAACAAT
GTGGAATTCAAATCACTGGCCGGAGCACATCCAAAACAGTTCGAGCGCTT
TttaactttcttcaaagaaaatGAGATTTGCAACGTTTTGTTATTGCCTC
TCCATTCGGGCGCCAAAGGTTTAAATATTATTGAGGCAAGTCATTTGATT
TTGACGGAACCGGCGCTTAATCCATCTGATGAATTACAAGCTGTTGGAAG
AGTCCATCGCATCGGACAAGACAAAGAGACGTACGTGCACCGATTCTTTG
TGAGAGATACAGTGgaagaaaaaatgtatcatctGTTTAAACCCAAATCT
ACACAAGGAGAAAATACATTGGAGAACGAGTTGACAGTCGACGATGTGGT
GAACCTTATTCAAAAGACACAAGACGAAGAAGGAGATGTCTTTGCCAGTG
ATTCTGGAGATGATGAAAACACTACGGATGGTGAAGATGAAGGGGAGGAT
GACGGATACTTTTTTTAGGATAAGTTGCTGTTCGATTTGAGATTTATATG
ATATCCAAATACAACATGTTCCTACTTGATTTTACCATTGCTTCAAACAT
ACACCAAGATGCCTCAGCTGCGGTGATCAATTGCTTTCAACAGCACGATT
CAATTTCTTTGAACCatcgtgatttttttgtaatCGATGAAGATGCAGAT
TATATTCTGCTTAAAGATTTTGTGATATTCCATACTTCTGACGATGAGTG
ACGAATTTTCATCTATCATGGTATTGGTATTGCATATTTACAATAATCTT
GTATAAGATTATGGTATTGGTATGGTATTGGTTTCTGTTGAAAGTGATAT
TCCATACTCCTGGTGATAAGTGGCGAATGTTTCATCTATCATGGTAGAGA
AATTAGGACAGCCCATGTAACTCGGAAGGAGATCTTCATGCTACCACCCC
GCCTCCGCCTTCCCTCCCATTTTGTTCTACAATGTACTGCCAATCCCCCC
AAGATCGCCTGTCCCTCTGAAAACATCTAAGAGGTCTGCAACATAAATTT
CTCTCGTTCATTTGGTAAACTCATTCGCTTTTTcgtattttcttttattg
tgcTTGTTCCTTTCTTTCGTTGGTTCAATAAAGGCCCCTTAAAAGGCCAC
TCAGACCTTTCCGCAAAACATTTGGTattatagataggaaatatcgACTT
GTTTGGTTGTAATTGAATAGTCGCTATTGCAGTTCTACATAGCCTGTAGA
TGATTATTTTTGtacttttgaaacattttcgCGTTATCTTTTGAATCAGC
GAAGATGAGTTTGACACAGGCTAGGCCCTTCACAATTCATACATAGCCAG
TATCGAGTGTCTAAGATTTTCCATTATAAATCTCGATGCTGTTCAGTTTT
TCTGAACCTAAACTGATTCCTGATtctttttcttagtattttcaataata
tttttattatatttagatAGAGATAGTAAAAGGGATATTTTTATCTGACA
TTTGTAAATATGCACATACTAGTAGtacaaaaaagaaactgttCATATTT
gtcctttaaatattttttatgt

Run BLAST on NCBI

transcript from alignment at sc0000026:638006..653154-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003349 ID=TCONS_00003349|Name=TCONS_00003349|organism=Clytia hemisphaerica|type=transcript|length=15149bp|location=Sequence derived from alignment at sc0000026:638006..653154- (Clytia hemisphaerica)
TGATGCACTGCCACATTCGTTACAATAAACGTGAGATAAACTGTAGAACA
GAGAATTTGCTCTTCTGCAAAAATCTTTTTAAAAAAACATGCTGTACCAA
TGGATTCAACATTAAAATACTTCTATTGTCAGCTACGTCAATTTAAGGTG
TGCTAGCTAAACTGAAAAAGTCACCGTTTGTTCGACTTATAAAATGATTC
GATTAAATTTAGTTTTTTCCATTGCTCCGAAAATTTGACTTCTATATTGT
ATTAAATGCCTCTTTCCTCTGGAATTCGTATTTGATAAAAGGTCATTCGC
TTTCTTTACTAGGTATGGAACAAAGAGTTGTAGAAGCGGGTCGACATCAG
CTCAAATATTTTGATAAATTGAAGAAGGAGTTCAATGTAGGTATATTGTT
TGAGCGAGAGATGAATTTTGAAACAATACTTTCGTGGGATTAGATTTAGT
GCTTTGAAACCATCCGCTAAATTTAAAAAATTTCACGCGGTCCTAATTAC
GGGGATGACAATTTTGGTTTTGGGATTTTAGTAAACATTTTAAAATTGGT
TTCCAGCCATTCTTCTGAAATATTTCTGTTTAATTACAGCTGATCAGATC
GTTATATCTTGCTTGCCACGGGCGAGTACAGGCTATCGATGAGTTGGAAA
TGTGTATATCCAGGCTAAGGTTCCCGACACATTACGAGGAGATGACAGAA
GGTTTTTGTGAAGCCAGAAATGATATTGTTAGGCTAGGCGAGGTAATGTT
TACTTTCTCCCTGATAAATTACTTACTAACCTGCTTTTGATCCTGTTCTG
TGTAAATCGATTCCTTTCTTGATATCTAGGAACATTATTTCAGATGTTTG
GTTTGATAGGAAATACTTTGCTTTGTTCTCAATGACACTAGTAACACAGA
TCACATTTAATAAAGGGGTTAACCGAATTGGTGATGAAATTGGTCCAATT
CAGGCTCTTGTAAACTATCATTATTCCCACTACCATTTAGGTTAGCCAGA
CGCGTTACGCGCTCTTATCCGACCGCGTCACGGCAAGCGAAGAGTTAAAA
TTGAAGAACGGGCAAATGGCTTATTTACAAAATCTTGCAAAGGTAAGGAA
TGGTATAACTTCCACTTCCATTAATTCCATTAAATACCACTGAACTTGCT
GGTCAAAGATATTTCTTAAGAACCTTTTTTAAAAGTATCCAAAATAGAGA
TATTTAAAATAACTAATAATTAGATTGTGATCAGAGCTGATGGGAGTACT
CAAAATCATGACATCGTTTCCACTAGGAAGCTGTTTTTATTTCATAATAT
ATTGTTTTTTTGGACCTACCGGGAGGTCCTTTAATTTGACCGTTGTCCGT
TCGTCTGTTACAAGCTTTTCTCGGAATTGGCTCATTACTTTTTTCTAATT
TTTTGCACAATGATACAATATGGCAATGCCTGTAAAGTGACGGAGCCCGA
TTTTTGAAAAAAAATTTTGGGGGCAAATTTGGGCCAAAAACTACCTAAAA
ATAAGGTTTTTTGGACTTTGTGCAAAATTGCTTCATTAGTTTTTCCTGAT
TTTTGGCAGAAAGATAGAGTGCAAGGTACCCTAAAATGTGGCTGAAGTAA
TTTTTCCCGGAAAATCTTTTTTCGTCGTCAAATACGGATNGCAAGGTACC
CTAAAATGTGGCTGAAGTAATTTTTCTCGGAAAATTTTTTTTCGTCTTCA
AATACGGATTTTCGCAAATTTGGGCCAAAAACTACCCAAAAATAAGGTTT
TTTGGACTTGGTGCAAAATTGCTTCATTAGTTTTTCCTGATTTTTGGCAG
TAAGATAGAGTGCAAGGTACCCTAAAATGTAGCTGATGTAATTTTTCTCG
GAAAATTTTTTTCGTCGTCAAGTACGGATTTTCGCTTTTTTGGGGAAATT
CCCTTTTACCATTTTCCTGTTAGCAGCTTTTCTCGGGATTGGCTCATTAG
TTTTTTTTAATATTTTGCACAATGATACAAAATAGCAATGCCTGAAAAGT
GACGGAGCCCGATTTTTGAAAAAAAATTTTGGGGGGCAAATTTGGGCCAA
AAACTTCCTAAAAATAAGGTTTTTTGGACTTTGTGCAAAATTGCTTCATT
AGTTTTTCCTGATTTTTGGCAGAAAGATAGAGTGCAAAGTACCCTAAAAT
GTGGCTGAAGTAATTTTTCTTGGAAAATTTTTTTTCGTCGTAAATTACGG
AATTTCGTTTTTTTGGGGAAATTCCCTTTTACCATTTTCCTGTTAGCAGC
TTTTCTCGGGATTGGCTCATTAGTTTTTTTTAATTTTTTGCACAATGATA
CAAAATAGCAATGCCTAATAAGTGACGGAGCCCGATTTTGAAAAAAAATT
CGGGGTAAATTTGGGCCAAAAGCTACCTAAAAATAAGGTTTTTTGGACTT
AGTGCAAAATTGCTTCATTAGTTTTTCCTGATTTTTGTCATAAAATTTTC
AAAAAAAGACGACCAAGTTACACAATGATAAAAGAAAATAAATCAGACGT
TTTTGCATTGTTTTAAAACTTATTGTGTTTACTCAATCCCAATAGTAAAA
TGTAGAACACCTACTTTTATCTGATTTTGATCAACAGGTCATTTCCTTAT
AGGTGCAAGAGGATAACAATGGTTCAAATCCAGAACCATGTCCTATTTGT
GTCTTCCCACTGGGCAGTGAAGTAAGTTTGCCTGTTTTGCCTACTTTGCG
ATGTGGGATGAAGTATTGCAGCTTTCTCTTGTGCCTCACAAAATTGCTTG
GCAGCGCTAAGATTTCTGGCCCTATGTTTGTAGAACCTTTTCAGAGATAC
CAGAGAACCTGTTCGCATGACAAGGCCCTGCAAAAGTGGAAAATCGATCG
AAACCTTCTCCTTAGTTAGAAAACTCCACTAAACTTTAACCCCTTATGGG
AAGAAAAATATTTAAAAATCCTAATATGATCTCGATTTGCCATATTATTA
TCAGATTTCTGAACTCCAAATTTTTTTCTCTCAGTGGGCAGTAATGACTT
GTGGTCACAGTGTTTGCTGTAAATGTATGACTACCCTTCAAAAGAGAAGC
AATTACAAACGAGCTGCTATTCAGTGTCCCATGTGTCGTGCACAAAGCAA
ACTAACCGCCATCTCAATCGTCACCGCAAAACCGGCTGCCGTGAAGTCGA
CCGATACTGATCGAGCAAGCAGTGATAGTAATGATGATATACTCGACGCT
AACATTTCAGTTCAAGTATGATCTTTAAACATTTCTCTTTTTACACAAAA
TTTGAGCTTAACAGTTTGAACTGTGCAGTGCAGCTCAAAGAATCCGAAAA
ATCTATTCAAGCATTTTCAATCGTGGCTTTTAGGTAATTTTAGGTAATTC
GCCTGGAAAGATTATCAAATTTCATACCCTCACCTACAACACACTTGAAT
ATTCTTTTTTTTTTCAGCAATGATTCCCAAATAAGTGTAAAAGTTCTGAG
TAAAAGCCACTAGAAAATGAAACAAGTGAGGATACATTAATACTTACCGT
CTTTATCCTCTAGGGAAACTTTTCGACGAAAATCGAAGCTGTCGTTCGCC
GTATCTTATGGATCCAAATTGAACAACCAAAAGCCAAGACTCTTGTTTTC
TCCACGTGGACAAACGTACTAAAAGTCATCAGCCAAGCTCTCAGTGTCAA
CAATGTGGAATTCAAATCACTGGCCGGAGCACATCCAAAACAGTTCGAGC
GCTTTTTAACTTTCTTCAAAGAAAATGAGATTTGCAACGTTTTGTTATTG
CCTCTCCATTCGGGCGCCAAAGGTTTAAATATTATTGAGGCAAGTCATTT
GATTTTGACGGAACCGGCGCTTAATCCATCTGATGAATTACAAGCTGTTG
GAAGAGTCCATCGCATCGGACAAGACAAGTAAGTCATTTCGACTTTTTAT
TGGACCTACCCCGGTGGGGTGGAGGTCCTATAAATTAACCTGTGTTCGTT
CGTCCGTCCGTCCGTCCGTCCGTCCATTCGTCTGTTACCAACTTTTCTCA
GGATTGAATCATAGGAATCTTTTGATTTTTGGTACAAAGGTGCAAAATGG
TGGTGGCCAAAATGTGACGGAGCCTGATTTTCGAAAAAAAATTTTGGGGG
GTAAATTGGGGCCAAAAAACGGCTTTTTGGACTTTGTGGAAAATTCGATC
ATTAATTTTTTCTGATTTTTTGCATGAAAGTAGGGTACCATCATAGGTAA
AAGATGGCTCAAGCAGATTTTCGCAAAAAAATTTTGTTGGCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAATCAC
TATTAATAAGCATAGATCAATGTTTTTAGCCATATTATTATTTTTATTAG
TTTTTTTAAGATGGAAATGTCAAGGTGGAGGGTTTGAGTTTTCTAGAAAC
ACTTATTATTTTTTTGGCTGAAACCGAATCTTTACCGAATCTTTATCTAT
AAGAATCACTATTTATAAGCATAGATCGATGTTCTTAGCCAAATTATTAT
TTTTGGACCTACCTTGGAGGTCCTATAAATCAACCGATGTCCGTCTTTCC
GTTCGTTCGTTCGTCCGTTCGTCCGTCTGTTACCAGCTTTTCTCAGGATT
GGCTCATTAGTTTTTTCTAATTTTTGGCACAATGATGCAAAATGGCAATG
CCCAAAATGTGACGGAGCCCGATTTTCGAAAAAAAAAATGCCGGAAAAAC
GGGGTTTTTGGCATTTTCTCGAGAGTTTATCATTAGTTTTTTCTAATTTT
TGGCACAATGATGCAAAATGGCAATGCCCAAAATGTGACGGAGCCCGATT
TTCGAAAAAAAAAAATGCCGGAAAAACTGGTTTTTTGGCATTTTCTCGAG
ATTTTATCATAAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACA
ATGCCCAAAACATGGCCCAGTCTGATTTTCGAGAAATTTTTTTATAGCTT
AAAATGCCGGAAATATGCCGGAAATCGCCGTTTTTCTGGATTTTCATTGG
ACTTTTTCCTTATAATTGGTTGTTTTTTTCATTCAAAAACATTATAAATA
GCAATGCCCACCATCAAGCATGTTTTAATTTTCAATAAAATAGATTTTTG
AAGCCGGAACTATTTAAAAATCGCCGGAACAACCTATTTTCGCCGGAAAG
ACAGTATTTCTTGAATTTCTCAAGCTGTACTTTATATTTTTTTATCAAAT
TTTACACACTGATGCAAAATGACAATACCGAAAATGTGACGGAGACCGGT
TTTCGAAAAACATTGTTTCCGGCCGAAAATGCCGGAAATATACCGGAAAA
ACCGGTTTTTTGCCATTTTCTAGAGATTTCATCATTAGTTTTTTCTGATT
CTTTGCACAAAGATGCGTAATAGCAATGCCCAAAACATGGCCGAGTTCGA
TTTTTGAGAAAAAATTCTTTTCTGGCCGAAAACGCCAATAATATACCGGA
AATCGCCGTTTTTGCAGATTTTCATTGGACTTTTCCTGATATTTCTTTGT
TTTTTCACGCAAAATCATTATTGATAACAATGCCAGCCATCAAGTATGGT
TCAATTGTCAATAAGACTGATTTTTGATGCCGGGACTTTATAAAAATCGC
CGGAACAGCCGAATGTCGCCGGAAAAACGGTTTTTCTTGAATTTCTCGAG
CTGTACTTTATATTTTTTCATGAAATTTTGCACACTGATGCAAAATGGCA
ATACCTAGAATGTGACGGAGCCTGATTTTGGAAAAAAAATAATTCGGCCA
AAAATGCCGATAATATGCCGTCAAAACCGGTTTGTTGCCATTTTGTCGAG
ATTTCATTAATCGTTTTTCCCGATTTTTGCACAAAGATGTGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATTCGGATTTTTGAGAATCATGTTTTTCCGGCCG
AAAATGCCGGAAGTATGCCGGAAATCGCCGTTTTTGCAGATTTGAATTGG
GCTTTTTCCATATATTTCTGTGTTTTTTTCTCACTTAAAAAAATTATTGA
TAACAATGACACCATCAAGCATGATTCAATCGTCAATAAAACTTTTGCAA
TTTTGCAACCGGAACTTTCTATTTCTTTTTTCCCTAACCCCCTCCCCCCC
CCCAAACCATCAATGATGAAATTTAATGCATTTTTACTAACCGCTATATT
TTTTTAATTATTTTTTTTTTTTTTTCCCTAAACCCCCCCCCCCCCCCAAA
CAATCAATGATGAAATTTAGTGCATTTTTGCTAACCGCTATATTTTCTTA
ATGATTGTTTTCTCCTTATTGCTATCTAAGTTTCATCATCAGGTAGGTCC
ATTCAGCATATTGCTTGTTTATATTTCTGGTGTGTCGAGAATTATGTCAA
TCATGTCTGTTACAATAGACTGAGGCCAAATAGTTGAAAGAAAGGAAATT
CTAATTGCTTTCATTAGTATCTTTAAAATCTATAAAATGATTAAAAACGT
TAAACAATATAACATATTTCTAAACATTAGGGATGCGCGCAGCCTAGGCA
AAACTAAAACTTCCAATTGCCTGCATTAGTATCTATAAAATCTATAAAAG
GATTAAAAACGTTAAACAATCCAGGTGTATGGGTTGGCATATTTGTTTGG
TGTACGAGCGTTTGGTTTAAAGGGGCAAGCTGAAGCATAATGACCGTAGT
TTGAACAATGATAGCAAGAGGGTAAGTGCGAATATCAAAGGAAACTATTA
AATAATTTGTCATTAAGTGTTTTCCAGTCGGTTGTTCGTAGTCGAGCATG
CAGCAAGTGTTGGACAGCAAGTGTTTGACGCTGAGACTTGTCGTATAAAT
AAATGTTTTCAAAACGATGTTTTCTTGCCAGATTTGTAATTGTTTTGAAA
TACTTAATGTTTACCGGGATGAGTAGCCTTGGTATAAGAGGTTCCATGCA
CAGAAGATCCATGATGTAAAGTCACGTATTCTTGCTTTTGTTTGGTTAGG
TTTGAGTAAAAGGTTTTTGTCTACATCGAGTTGAAAACCGAGTAATTCTG
TGCTACTGTTGACTGATGGTGGTGGATGAAGTAAATCATCGAAATCGACG
TATTTGAATTTCTTTACCTTAGTTACTCTCGGGTATCTAATAGCTAAGGG
GGGGGGGCTAATTAATTTTCGAAAATTTTCCACCGAGTATTAAGTACCCG
AGAGTAGGATAGCAGTCTTTAAGTCCCGGTGGGGTGTATGGGCTTATAGA
ACTAGGAAATGTACCTTTATTTATGTGGGTGCTGTTTGGTGGGGGGGGGG
CTTTGGTGGTAATGTGAATTCAAAAGTGGGTGAATCATGTTGTTGGTCGT
GCCCATTTTGCTCAATTTCATCATTGCTAATTTTGATATTTTGTGCTTTG
TTGTTTATGTTTCTGTGTATCGATTGCACGAATTTTCTCTCTTATGACGG
AAATTATTTGTTGAGGATTTTCGACGGAGGAGGGTGTTGGATTATTATAA
TTATTAATGTTGTCATTTATGTTGCTAAATTTGCTGTGTTTTTTCATAGT
TTCAACGTCTGATCGTCTGATGGGTCTAGTAGAGACAAGGGGGCGGAGAG
CAGGAGCGTATTCTTTGTCTACCGCCACTAAACGAAATTTCGCGCTCCGG
GCACGAAACTGAGAGATGCGCGCAGCCTAGGCAAAACTAAAATTTTCACG
TCATTACTCGGCCTACTTTTGCTTTGGCTGACTCTGGACATCCTTTCACA
TCTCTATCGTCCCTGGAGTTATCCCCGTTCTCAACATTATCCCACTTTAT
AAATGATATCCTTTTAAGCATTGAGTTTCAAGCCCGAAGGGCTAGAGGTG
AAACTTTAACCCTTCTCAGGCAAGAGAAATTGAAGCCACTTATTTCCCAT
CCAAAAACGCGCATAGAACGCGCCGTAATCTTGACGATGGATTGTATCTA
GCGGTTCCTTTGTTTTGGAGAACTACATTTTTTTAAATCTAGCGATAGAT
TTTAGTTTCAATCCGGTGTTTGTGTAAAAACTACGCGCTGGTGTTCTGGA
TGGGAAATAAGTGGTTTGATTTCCCATCCAGGAGTCTCTCATCTAGCCCT
TCGGGCTTGAAACTCAATGCTTTTAAATACAACAGCCTCTAAAAATCAAA
GTCAAATTTTAGTAGCTTCCAATAATTTCACCCCTTCTCCCTTGAACAAC
GGATGTGGCTTATAGTCGATGGTGTTGAATATAGGTTAGTGGTTAGACCC
CCTGAAAAAATCGTCCAACCCTACTTCATGAATATAAAAATGACTTGTCA
TTTGTATCAAGAGAGCTTGGTAGCGTGATTGATAACCCAGCTGGCACACA
ACGTTGTTGTAACGTTCATCTAAGGTTATATGGACGTTATGAACATTAGA
AAGACGTTGAAGCAACGTTGTGTGCCAGCTGGGAAGTGGATGAATAACTT
TATATTGAGATTATTAATATTAATGATAAATTCATATCAGTCTTGAGTAA
TCAGAATCAACTCCTTCAAATCCACGTCATCCTTTCAAAAACTTACATAA
TGTAGGGTTAGGAGAAATGGGTTTTTCCAAAAAAAACCGTATACCCCCAA
ATTGAGGAAATCCATTCCTTTGTTGCTGGAAGTGTTGCAACCCCTTGGAA
TTCCAGAAAATTTCAGGTTTAAACCCCTCTGGAATTTTAAATTTTAGTAG
GATTTAAAAAGCTACCCCCATGAAATTCCAGTTATATCCCTTTGAATTTC
CGCCACATGTCAAACTTTGGAACAGAAATGGACCTCAACAATTTCACGAA
ATTATGCAACTTTTCTGTTTTTTTTTTCCACCCAACACGTCACTTTTGCT
CTTGTTTAAGTGACGTATTTGGATGGAAGTTCTCAGAAGACTCTCCAGTG
GTGCAAATCACGAATAACATCATTTAAGATAAAAAGCAACAAATATTACA
GCCAATTCGATTGACTTCCAAATTTGCCATACTCACCAACTTTGCCAAAT
CTACAATTTCAATGTCAAAAGATCACAGCTTCATGGCAAATTTGTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTGTGATGCTTAGTCAGCAGTTTTCTGTCGGCGTTTGTAA
AGCGAACGATTTTTTAACCAATCAAATTGCCGATCGGCATTGTTTTGCTT
TAGCATTGGAACGTGGAAGGTCTTCTATTTTTCAAAATCTTTGGCAAAAG
TGGCAAAATTGGAGCGAAAAGAACACAGGCCTCGTGGGAACAGTGTTTTG
TATGGAGACGTATGGAGGTAAGTTCCAAAAATGCCAAGAATGCCAGATTC
ACCACATCTTTTTTATTTGGCATTTATGGCACNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTGCCACATTTGCCAAATTTTTGTCAATCG
AATGCAAAATAATTGGCAATCAGGGCAAAAATGGCATATTTTGAAGTCAA
TCGAATTGGCTGTTACAGTGTGTGCAAACTGTCCGATATATAAATATAAC
ACACAAAACATTGATCTATTTTTCTAGTCTTCTAATTGATGCTGTAAAAG
TTGACGAACAGCATGTCTATTATTCTTTACAAACGTTTCCAACAACATTT
TGTTTAGACAGGCTTAATAAGAACGGTTAACGTTCGAAAGCTCTCGTTTT
CTCCTCTTAGAAGGCGTACGACGATTCCTTCATTCTTTGGGATATTTTGT
GTACCGGAATATGGGCCATGAAGCACAGTTGACCCACACGATCCAAACCA
CCATCCCGCTTTCCACTTTGCTGCACACCCGGCGTCGTTATCGTTGTCAG
CGGTCGAAAATCTGTTTCCGTTCAAATTTTCCCATGCATTCCCAAAGTCT
GTGGATCCGAAATTATAGGTACCTGACTTCAGCTTATATTTGTTCGCTTC
ATTCTGGATAGAAAAGCTCTTAAACCCGATTGCATATTTCGTTCCATCGA
AAGCCCAAAGTTGAAGATAAATCATCATTTCACGGCCTTTTGTTAAGAGA
TGGATGTTTTCGTTACCCAGATAAAATTCACCACTCAGATCTCCGAAACC
GTCTTTGTATTCTTTCCACAACCGAGTGAAATTGACTGAACCATCTTGTC
GTTTCGCTATCATTGTCCATGAAGCTGAACTGTAAAGACCACAATATACT
TTGAACTTATTTCTGTTGTAGAAAATCCAGTAAACACCCGACTGCGTGTA
ACCTCTAGCTCTCCAATCTGCACAGCCAATGTTTTCATGGACAGCTTGAG
CCAGCATTTCTCCGGTTTGTGAAACCAAATAATTTGACACGTCAGAGATG
ACGTTGAAAAGCCTGCAAAGCCATGTTGTAGTGGTCATTTGTTTATGTTG
TACATATTCACAATGAGTGAAGTTTTTGACGCATTTATCGAAGCAATGAT
CTTTTGAAGCTACTTCTCCATCAAACCATGGTTGAGGTCCATCAATAGCA
GTGTTCGAATGAATATGTTTGAACGGTAGAAATGGCATAAATTGTCCAAA
TGAGAGATGAACACATAATAAGAGGCCAAACCAAAGTGCAGAAGCATCCA
TCTTCATGCCTTTAGAAATTAGAAATTTTTGATACTAAAATTAATTTCTG
ATGGGGATTTTTTTCCTTTTGTTTACAATTTTCATTTAATCTTACCAAAT
AATGAATTAAAGTCATTTACTAGTTCAATACTAGTTCAGATTTGAATTTA
TTGATCATGAAGGTTTTTCTATACTTTGATTGATGGGGTTTGGGTGTTGT
TTTAACAAAACAAAACAGGGGGTGGGGTAGATGAACTTTTCATTTACGCC
CTGAAAATTTTATAATAACATTTAGCACCCTGGAAAAAGTTTCAGGTTTT
TTGGAAACTCTTGGAAATTTATCTTCTGGTAGTACTCCTTTGAATATTAA
CAAAATCAAATTTAAATCAAACTCTTTCGACAAATTATTAACTTCCCTGA
CCCCCGGAAATTCTTCTCTGAATATCTCCTTTAAATGTCCAATCACTCGC
TGTGCTGTATGGATATAAAATGGGATTGCAAAACATTTTCTCTGTCGTTG
CATTGACAACGTTGCTTCATTTAAAGGGACATAAAAGTAGTGACGAAATT
TGTAAACAAACCGTTTGCAGCGGGATACAAAATCAAAACAAATGTCACAT
GTCAAAATAAAAAAATGATTGTTTCAATTGTTTTACAAGTTTGTTTTGGA
CACGTGATTTTAATTGTTCTCTTTAACGACATGTGGTTCGTGCAATGTTT
ACATTTTACTACTTTTATGTCCCTTTAAAAGCTATTCATACTAAAAACAT
ACAGAATAGCTTCAAAAATTATATTGGAATTCCTGGAGATTTAAAACATA
ATGTCGTTTAGCGATGTTGTGTTATACCCGAAAAAAAAATTTAAAATCCT
TTTACGGTGGTACTAAAATTTTTGATTATTTTAATTTTTGAATCTTTTTC
AGAATTTTTCGTAATTCTACGGAAAAAAAATTACAATTTTTCAAAATCAA
GTCAAAAATTTCTCATTTGAAAAAAATTTCCTATCGATTATTTTAGCATC
CAGTAAAAATTTCTTTCTGTTTACTCGATTCATGAAGTAGCATTGTTCTA
AAGTATCACCTTGTGCAAAAAATGATTTTTGGACCTACCTGGAGGTCCTA
TAAATTAACCTTTGTCCGTTCGTCCGTCCATCCTTTATCAGCTTATCTCC
CGATTTTCGAAAAAGATTTTGCCGGAAAAAACGGTTTTTTTGGCATTTTC
TCGAGATTTCATCATTAGTATTTTCCGATTTTTATGCACAAAGATGCGAT
GCAATGCTCAAAATGTGGCCGAGTCGGATTTCTGAGAAAAAATTTTTTTC
GGCCAAAAATGCCGGAAATATGCAGGAAATCGCCGTTTTTGTAGATTTCC
ATTTGATTTTTCGTTTTATGATCTTTTCCACTATCGCTTGAAACTACAAT
CGACTTTCCATAACTCGAACCTCCTCAACTCGATTATATATATATATCGA
TTATCTCGATAAACTCTTATTAGGCTATTCTGTCTCTCTATAGCTCGAAT
TTCCGTAACTCGAACGATTACTGATTATACCCTTCCCGTTCCAGCACTCG
ACTATATTACACTTCCCTACTTGCTCTAACTTTAATCATCAGGTAGGTCC
AATCAGCGTTCCGGCTTGTTATTATTATTGTTATTTCTAAAAGGAGAAAA
TGTCACGGTAGAGTGCGATGGTTTGAGTTTTCTGTAAACCTTATTTATTA
AGCTGTGCATTTTTCTGATAGTGGATTGTTTTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TCTTTTTCAAAAGTATTTTTCAATTGTGTTGATAGTTTCTCCCAATAGAT
ATGCTTTCATTTTTCTTTATTTTTTTGTATTTTGACCAGTTATGTCTTTT
GTGTTTCATTGTTTCAATGTTCATTGATTAGTTTGATAACCAGGTAGGTC
CATAAAAGTATCACTTGTTTTTCAAGCGAGTTGACATTTGTTATGGCTCA
ATGTTTTTGCCTTAAAATATGATTTTAGACCATTTCTAATGGCTTTCAAC
ATTTCGTTATTTTTTTCGACACTGAAATCAAAGAAATTTCGAAAGACTTT
TCAAATCATTTCGTGATGATAACTGGATTTCAATGAACAGGGATCGCTGT
AGCAACTTTATTTGAAATGGAAAAAATAATTAATCAATTACAGTCCTACC
TAGTCTGACTCGCACACTTTTATAGATCTACTTCCTTAATAGATCTGCTT
ACTATTGTATTGCTTGCCTTCCCGCTACGGTGGCTCATTATGGTGGCGGA
TTATTTCTTTTTGGCGAGTTGCAATGTTGAAATGCGAGTCGGAAAATAAG
CAAAGACATCCCTTGCCTTCATAAGAACTTTTTCTTTGGAGGACGATCAG
AAGCCTATGTTGTACCAGAGTGTTTTTATCTCTCAGACAAATTATTTACC
TGCTACGTCTTTTCATGTTTTTTCTTTCCAACCTTTTCTTTAGAGAGACG
TACGTGCACCGATTCTTTGTGAGAGATACAGTGGAAGAAAAAATGTATCA
TCTGTTTAAACCCAAATCTACACAAGGAGAAAATACGTACGTACTTTTGA
CTGTCTACATACCTACTTTTACTGATAATCTTTCCCCATCGACTGCGGTC
GCAAACTTACTAGCCTTATACCTTATCAGGAGGAAATTCTTCGTTGAAAA
AATTCGTCCGCAAAAAAAATCCGTCAGCAAAAGATTTTGTCACGAAGTGA
TTTTTCCGTCACCTTTTCCCGGCGAACTTTTTACTGATAAGGTATTTTGA
ACAAGATAGAAAAGTTCGAAATTTTATTTTGTCTAACATTACAGATTGGA
GAACGAGTTGACAGTCGACGATGTGGTGAACCTTATTCAAAAGACACAAG
ACGAAGAAGGAGATGTCTTTGCCAGTGATTCTGGAGATGATGAAAACACT
ACGGATGGTGAAGATGAAGGGGAGGATGACGGATACTTTTTTTAGGATAA
GTTGCTGTTCGATTTGAGATTTATATGATATCCAAATACAACATGTTCCT
ACTTGATTTTACCATTGCTTCAAACATACACCAAGATGCCTCAGCTGCGG
TGATCAATTGCTTTCAACAGCACGATTCAATTTCTTTGAACCATCGTGAT
TTTTTTGTAATCGATGAAGATGCAGATTATATTCTGCTTAAAGATTTTGT
GATATTCCATACTTCTGACGATGAGTGACGAATTTTCATCTATCATGGTA
TTGGTATTGCATATTTACAATAATCTTGTATAAGATTATGGTATTGGTAT
GGTATTGGTTTCTGTTGAAAGTGATATTCCATACTCCTGGTGATAAGTGG
CGAATGTTTCATCTATCATGGTAGAGAAATTAGGACAGCCCATGTAACTC
GGAAGGAGATCTTCATGCTACCACCCCGCCTCCGCCTTCCCTCCCATTTT
GTTCTACAATGTACTGCCAATCCCCCCAAGATCGCCTGTCCCTCTGAAAA
CATCTAAGAGGTCTGCAACATAAATTTCTCTCGTTCATTTGGTAAACTCA
TTCGCTTTTTCGTATTTTCTTTTATTGTGCTTGTTCCTTTCTTTCGTTGG
TTCAATAAAGGCCCCTTAAAAGGCCACTCAGACCTTTCCGCAAAACATTT
GGTATTATAGATAGGAAATATCGACTTGTTTGGTTGTAATTGAATAGTCG
CTATTGCAGTTCTACATAGCCTGTAGATGATTATTTTTGTACTTTTGAAA
CATTTTCGCGTTATCTTTTGAATCAGCGAAGATGAGTTTGACACAGGCTA
GGCCCTTCACAATTCATACATAGCCAGTATCGAGTGTCTAAGATTTTCCA
TTATAAATCTCGATGCTGTTCAGTTTTTCTGAACCTAAACTGATTCCTGA
TTCTTTTTCTTAGTATTTTCAATAATATTTTTATTATATTTAGATAGAGA
TAGTAAAAGGGATATTTTTATCTGACATTTGTAAATATGCACATACTAGT
AGTACAAAAAAGAAACTGTTCATATTTGTCCTTTAAATATTTTTTATGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001853	XLOC_001853	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000026	supercontig	sc0000026:638006..653154 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.161195	0.718283	2.44387	0.0714024	0.713044	0	0.683287	0.986032	0.825271	0.000869861	3.54178e-05	0	3.3431e-07	1.63898e-08	0	2.56136e-10	0.886745	0.00573308	4.90282e-08	6.06922e-05	1.29777e-08	2.58598e-07	4.97775e-05	0.57792	4.41903	1.22327

Blast

[Close]

BLAST of TCONS_00003349 vs. Swiss-Prot (Human)
Match: SHPRH (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 3.591e-80
Identity = 158/391 (40.41%), Postives = 226/391 (57.80%), Query Frame = 3

Query:   30 RMEQRVVEAGRHQLKYFDKLKKEFNLIRSLYLACHGRVQAIDELEMCISRLRFPTHYEEMTEGFCEARNDIVRLGEVSQTRYALLSDRVTASEELKLKNGQMAYLQNLAKVQEDNNGS-NPEPCPICVFPLGSEWAVMTCGHSVCCKCMTTL--QKRSNYKRAAIQCPMCRAQSKLTAISIVTAKPAAVKSTDTDRASSDSNDDILDANISVQGNFSTKIEAVVRRILWIQIEQPKAKTLVFSTWTNVLKVISQALSVNNVEFKSLAGAHPKQFERFLTFFKENEICNVLLLPLHSGAKGLNIIEASHLILTEPALNPSDELQAVGRVHRIGQDKETYVHRFFVRDTVEEKMYHLFKPK-----STQGENTLENELTVDDVVNLIQKTQDE 1178
            R +   V+ G   +  F+  KKE+ L+   ++A   RV A+DEL M   RLR     E            I+   EV Q R  LL+D+  A+ +L+ K GQ+ YL NL K Q+  +G  NPEPCPIC   LG +WAV+TCGH  C +C++ +  Q      R++I+C +CR  +    IS V     A +  D                I V+G+ STK+EAVVR ++ IQ+  P AK LVFSTW +VL +IS+AL+ NN+EF  ++    K F+  L+ FK +   N+LLLPLH+G+ GL IIEA+H++L EP LNP+ ELQA+GRVHRIGQ K T VHRF ++ T+EE+M  + K       ++  +++  + LTV D+ +L  K  +E
Sbjct: 1312 RFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPN---PPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKANQEED----------------IPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRV--KTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSHTNSSAKHSEASVLTVADLADLFTKETEE 1681

The following BLAST results are available for this feature:

BLAST of TCONS_00003349 vs. Swiss-Prot (Human)

BLAST of TCONS_00003349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
SHPRH	3.591e-80	40.41	E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens ...	[more]

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TCONS_00003349 (transcript) - C. hemisphaerica

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POSITION

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