TCONS_00003250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00003250
Unique NameTCONS_00003250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00003250 ID=TCONS_00003250|Name=TCONS_00003250|organism=Clytia hemisphaerica|type=transcript|length=1431bp
GTACAGGTCAAAGAAAGGAATATCTTGTTAGTCATTTCTCTTGAAAAAGG
AAAGCTAGCGTTAAAGATGTGTAGAGACGCTAAAAACCTAAAACTAAGTA
TAGTGGAGAAAGCTGCGTGATAGCAAGACTCAGCCTGAGATTGATTGAAT
TTGACATGTCCTAAATGTTTAATATATTAGACAAGAAGGCTCAACATCAA
TCCCTACTTCTGATAAATGATTCTTTTTTTCTGACTGGTTGATATTTCCC
ACTCTTTGTTTttttagaggtatcatatgtcaTTTTCAAAGGTTACTTAG
AGGACTTTAAGGAGATTATGCTTGACTGACAAATACTTTACCACTTTGTG
ATAAATACCGAAATTGTTCACAGGAATTTTTTTGACCCGCATCCGGCGCA
AAGAgtgatcttataaaaaataaaatcatcatCAATATTATAGGAGTTAT
ATTCAAAAGAATAAGCATTGATTTTCGTTTTAAATTTggatagttttttt
ttaaaagacttATGACATTCAATTTCAGTTAGTTGGCATTTTATTCCAGA
TTTTCACAGCCTGGTGTGAAAAGGATTTCAGTCCTGTTTCGCACACAACA
GAAAGTTGTTGTTTTCTAGAGGTTAATTGATCATTTTCACAAGCGAACAT
TGATCCGAAGCCCTCATCAATCTATTGATGGTAAACTCTGTGCATCATAC
ACAGTATTCTCCTTAATACCTTCATTTCTTGTTCTAcaccataaattttt
tttgttaagtttttgaaattttgatgatcACCAACTTTTTCGAAttacct
ttttctttttcttttttagaatttttaaactaataaactatttattcaat
atatttttttactattttactatttattcttcttcctttttatatttttt
tatttttataaacaagtttttgttaaatatttgcgaTGTTAGCAgatgtt
agcttttttaggcttatgcaaataaatggatagaaatagaaatagaaatc
gaCGTTTGTATATGTATGAGATCGGCATCCAACTTGCTTTTTTCAATGTT
TCGAAGCTGGACAGGTTTTACCAAACGGTGTATCACCGTTTAGCAGCTTT
AACATGGATTTCCTCCAGAGATTTTACAGCCGTGCAAGGCACTAAGAGGC
CACGTGGGTGCCAAatttcattggtggaaatttgataaaaagcAGTGAAG
GAGCTCCGGGAAGTAATCAGTAGAaaagaccactttcgtttttgatgcag
atttcgatataaactttTCTCACAGGCATTACTTGTCAATGCGTTGTGTC
AACTTACTTGTCAGCAATGTATTGTTGTAaaaggaaagataaaagaggta
agactagcctagttcctaatcctgatataggagtttaagcttagactgaC
CGTAAGTtagtctaatatcgacatccctctt
Run BLAST on NCBI

transcript from alignment at sc0000025:959078..960508

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00003250 ID=TCONS_00003250|Name=TCONS_00003250|organism=Clytia hemisphaerica|type=transcript|length=1431bp|location=Sequence derived from alignment at sc0000025:959078..960508 (Clytia hemisphaerica)
aagagggatgtcgatattagactaACTTACGGtcagtctaagcttaaact cctatatcaggattaggaactaggctagtcttacctcttttatctttcct ttTACAACAATACATTGCTGACAAGTAAGTTGACACAACGCATTGACAAG TAATGCCTGTGAGAaaagtttatatcgaaatctgcatcaaaaacgaaagt ggtctttTCTACTGATTACTTCCCGGAGCTCCTTCACTgctttttatcaa atttccaccaatgaaatTTGGCACCCACGTGGCCTCTTAGTGCCTTGCAC GGCTGTAAAATCTCTGGAGGAAATCCATGTTAAAGCTGCTAAACGGTGAT ACACCGTTTGGTAAAACCTGTCCAGCTTCGAAACATTGAAAAAAGCAAGT TGGATGCCGATCTCATACATATACAAACGtcgatttctatttctatttct atccatttatttgcataagcctaaaaaagctaacatcTGCTAACAtcgca aatatttaacaaaaacttgtttataaaaataaaaaaatataaaaaggaag aagaataaatagtaaaatagtaaaaaaatatattgaataaatagtttatt agtttaaaaattctaaaaaagaaaaagaaaaaggtaaTTCGAAAAAGTTG GTgatcatcaaaatttcaaaaacttaacaaaaaaaatttatggtgTAGAA CAAGAAATGAAGGTATTAAGGAGAATACTGTGTATGATGCACAGAGTTTA CCATCAATAGATTGATGAGGGCTTCGGATCAATGTTCGCTTGTGAAAATG ATCAATTAACCTCTAGAAAACAACAACTTTCTGTTGTGTGCGAAACAGGA CTGAAATCCTTTTCACACCAGGCTGTGAAAATCTGGAATAAAATGCCAAC TAACTGAAATTGAATGTCATaagtcttttaaaaaaaaactatccAAATTT AAAACGAAAATCAATGCTTATTCTTTTGAATATAACTCCTATAATATTGa tgatgattttattttttataagatcacTCTTTGCGCCGGATGCGGGTCAA AAAAATTCCTGTGAACAATTTCGGTATTTATCACAAAGTGGTAAAGTATT TGTCAGTCAAGCATAATCTCCTTAAAGTCCTCTAAGTAACCTTTGAAAAt gacatatgatacctctaaaaAAACAAAGAGTGGGAAATATCAACCAGTCA GAAAAAAAGAATCATTTATCAGAAGTAGGGATTGATGTTGAGCCTTCTTG TCTAATATATTAAACATTTAGGACATGTCAAATTCAATCAATCTCAGGCT GAGTCTTGCTATCACGCAGCTTTCTCCACTATACTTAGTTTTAGGTTTTT AGCGTCTCTACACATCTTTAACGCTAGCTTTCCTTTTTCAAGAGAAATGA CTAACAAGATATTCCTTTCTTTGACCTGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001810XLOC_001810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00003250-exon-sc0000025-1491911889:959078..960508TCONS_00003250-exon-sc0000025-1491911889:959078..960508Clytia hemisphaericaexon
TCONS_00003250-exon-sc0000025-1510915933:959078..960508TCONS_00003250-exon-sc0000025-1510915933:959078..960508Clytia hemisphaericaexon
TCONS_00003250-exon-sc0000025-1575043694:959078..960508TCONS_00003250-exon-sc0000025-1575043694:959078..960508Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000025supercontigsc0000025:959078..960508 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.0746081 tpm) - - (0.701757 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.468207 0.170809 0.476991 0.62833 0.510963 0.402199 0.559888 0.698881 0.391905 0.242432 0.205897 0.174464 0.309297 0.433902 0.148543 0.274344 0.526959 0.290404 0.328763 0.51807 0.701757 0.422783 0.0746081 0.121262 0.249367 0.38947 0.504623 0.364475 0.539912 0.62482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00003250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
200400600800100012001400Sequence
Match NameE-valueIdentityDescription
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