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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00003208 ID=TCONS_00003208|Name=TCONS_00003208|organism=Clytia hemisphaerica|type=transcript|length=3642bpRun BLAST on NCBI protein sequence of TCONS_00003208-protein >TCONS_00003208-protein ID=TCONS_00003208-protein|Name=TCONS_00003208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=509bp MCSCGVTLKRWFCIFMLISIALIISGLFFIIYGALNYEDETEDLRYQKADRun BLAST on NCBI transcript from alignment at sc0000025:870138..883489- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00003208 ID=TCONS_00003208|Name=TCONS_00003208|organism=Clytia hemisphaerica|type=transcript|length=13352bp|location=Sequence derived from alignment at sc0000025:870138..883489- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000025:870138..883489- >TCONS_00003208 ID=TCONS_00003208|Name=TCONS_00003208|organism=Clytia hemisphaerica|type=CDS|length=15300bp|location=Sequence derived from alignment at sc0000025:870138..883489- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00003208 vs. Swiss-Prot (Human)
Match: ENTP3 (Ectonucleoside triphosphate diphosphohydrolase 3 OS=Homo sapiens GN=ENTPD3 PE=1 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.345e-39 Identity = 121/451 (26.83%), Postives = 203/451 (45.01%), Query Frame = 1
Query: 241 RVGAVIDAGGSATRLSLYNMNEKTKKFRLLGGKVFEC--EGKGIDHYNEDTYEELRNQLTNCLSQPFQNRLIEDRDVIPLYFGATGGMRLLRLQNKTLYNQTMGVIKDVLEKSSFKIANIKVLEGSEEAVKSWDAVNFMKA---------------AANRKGIVELGSTSLQFIFEPDQSQVTPSTENVIEIKTTEGTKLLYRTSYLCFGVTEAERRVNAFLL-NSTSLNESQPIDNPCYFSGYNKNITVDKIYGSACVSGDYARNELGSSFNAPPVNATTFLFRGTSDENAC----ASLFEKVYRVNPTGPGFNDVSQPPVNGNFYGLSTLFYVARYMKLSSDAGLEQFRAKRDEICAKKWSELTL-----DKYTARR-CFDSSYSYWLLTKGFNFPENS-DQIKFIQKNEDNVNIIWSLGWIKEVQDDLYKRKGLPYRFRIITRRPNFM 1506
+ G V+DAG S T + +Y + + + + F+C +G GI Y + +++ C+ + P++ GAT GMRLLRLQN+T N+ + I+ + F +++ G EE V W N++ G ++LG S Q F + ++ +T +++++ LY S+ C+G EAE++ A LL NS + N + NPCY Y+ + T+ ++ S C ++ S+N P + T F GT D + C AS+F+ + F+ V QP + G F + +Y A + LS L+ F + C++ WS+L L D+ AR CF ++Y Y L G+ F E + QI F +K N +I WSLG++ + + + L R+ P F+
Sbjct: 56 KYGIVLDAGSSRTTVYVYQWPAEKENNTGVVSQTFKCSVKGSGISSYGNNP-QDVPRAFEECMQKVKGQVPSHLHGSTPIHLGATAGMRLLRLQNETAANEVLESIQSYFKSQPFDFRGAQIISGQEEGVYGWITANYLMGNFLEKNLWHMWVHPHGVETTGALDLGGASTQISFVAGE-KMDLNTSDIMQVSLYGYVYTLYTHSFQCYGRNEAEKKFLAMLLQNSPTKNH---LTNPCYPRDYSISFTMGHVFDSLCTV-----DQRPESYN--PNDVIT--FEGTGDPSLCKEKVASIFDFKACHDQETCSFDGVYQPKIKGPFVAFAGFYYTASALNLSGSFSLDTFNSSTWNFCSQNWSQLPLLLPKFDEVYARSYCFSANYIYHLFVNGYKFTEETWPQIHF-EKEVGNSSIAWSLGYMLSLTNQIPAESPL---IRLPIEPPVFV 488 The following BLAST results are available for this feature:
BLAST of TCONS_00003208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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