TCONS_00003151 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00003151
Unique Name	TCONS_00003151
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1145

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000025:226857..230463-

transcript sequence

>TCONS_00003151 ID=TCONS_00003151|Name=TCONS_00003151|organism=Clytia hemisphaerica|type=transcript|length=1145bp
TCCGTTGGACCACAACTCAGCTTCTCATGCAAAAGAAATCAATGGGTCTT
CAAAATCCTTTAGATGCCATTTTTCATATCCAACCCGTCATGGCGTTAAC
CATGGTTGTATTTGCTTTCTCAATGGAAGGACCTCAATTTGCATCGTCAT
CCCTAATCTTTCGATATTCAAGCTTCCATGTTTTGCTGACATCCCTGGTT
ATCATACTGTCTGGTGCTTTTCTAGCCTTTTTGTTGACAATATCAGAATA
TTTAATGGTGTCTCAAACTTCGAGTCTGGCTTTATCAATCGCCGGTATAT
TAAAGgAACTAGTGACATTAACAATAACAGCAGAATTAGGTGGTGATCGG
ATGAACGGTGTTAATGTGATTGGATTGATCATTTGTATGACTGGCATAAG
TGTTCATGTGGTTTCTAAAGCACTTAATGAAAACAACAGTGGTGGAAGTG
TGAATAGAGCCTTAACAGACGATGAAAACCCTGATTCCATTGCATTCAAA
TCGTTACTTACTGAAGAAGATTTTGATGAAGAGATATTGTTTGAATCGAA
TCATTCTTCAAAAGGTTGGAAAACACTCTCGACGTTGGAGTAGCTGATGT
GATTCTAGTGAAATGTGATAAAGTAGAGTCGGTATTTATTACGTGACCAG
CCCAGTTATCATGAAACGGCCAGAAAACTCGGCCTCTTTTAGCTCTTTTG
AAGGAACAGGGTCTCGAACTGCCAACCCCTGGTTTGGTTTGAGGTGTTGA
TGTCTGGACCACTCGGCACTCGCTCTACATATGACTTCACCTGTAACTAC
AACCATCCTTTGATTTACTCGAGTTTTCGAGTCAAggttcaaattattca
aaatgctTTGAAGTGTCAAGGTTCAAATACTGTTTGATTATCAGGAGCAG
TAGCTGATAATTTGGATGATAATCAACATCTTAATACACTTAGGTGAAGT
ATAGTAAAAAATGACACTTTCTTACAAAGATAACCCTGAAACTTgcaata
aaagtaaataaactcCATTTGAAACGAGAAATCGGAAATCTGGTGTATTT
CAATCATAGATGATATTTTTATTGCTTAgctaaaatttttatatttttca
ttattttctaaCAGCTTAAATATAAAACCGAAAAcagaatgaaaa

Run BLAST on NCBI

transcript from alignment at sc0000025:226857..230463-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00003151 ID=TCONS_00003151|Name=TCONS_00003151|organism=Clytia hemisphaerica|type=transcript|length=3607bp|location=Sequence derived from alignment at sc0000025:226857..230463- (Clytia hemisphaerica)
TCCGTTGGACCACAACTCAGCTTCTCATGCAAAAGAAATCAATGGGTATG
TAAAAAAACTGTGAGATTTCCAAGTATGACCATTTATAAAGCTGACCTTT
TCACCATTGTATATTATTATTTGTTATGAATATTAAAGCCCCTCTCAGTT
GACAAAAAATACACACATTCCACAGGAAAAAATCCGTGAATCACATGCGT
GTGAAAACCAATTTCCGAGCATGTGATCCTGCAAAAAATCACATGCGTGT
GAAAATGTAATTCACAATCCATCTTTTCTCACTTTTGAAATAGAATAGAA
GTGAGTTACTTTTAGGGTATTAAACCTCTCTCTCTAAGAAATACAAACAA
TCCTATTTGTGATTTTAAATCTGGTCACACCCCATTTAATAAGTCGAGAA
AAGATGGCTTGTGAATTGTATTTTCACACGCTTGTAATTTTTTTCAGAAT
CACATGCACAGAAATCAGTTTTACCAAGCATGTGATTTCCATACTTTTTC
CTGTGTTCATCACACAACTTATTTCCAAAATTCACACATTCACCCAAAAA
GCTTTTTCAAAAATCCATCTAACTGTGCTCAAATGATTTTTTAATAAGAC
TTAGAAAAATGGGGAAAATTTTACAAATTAAGATTGGAATTTCACACATA
TTTACTCCAAAAAGTTGTGAGCTTCCTGCATATTCACTCAAAAAGAAAAT
CAAAATAAAGTGCATTTTCTAGCAAATTATTTCAGTTTATGCAATATTCT
TAGATTTTTATGCATTTAATGTGAACCACTGAGGGTTTTTTCATGCAATG
GTGAACCACTGGGGTTTTTTAATATAAAACAGTAAATTTTAGCTGAGCCT
CATCTGTTCTTATTTATCTCAAATGTTTTTAAAATGTTCTTAAGTATTCA
CTAAGTATAAAACAGTAAATTTTAGCTGAGCCTCATCTGTTCTTATTTAT
CTCAGTCAAATGTTTTTAAAATGTTCTTAAGTATTCACTAAGTATAACGT
GCTTATGTAACTTTACATAATATAATATTATGATTACAACGAGAAAAATT
AGCATATGTCAGCACAAAATAATAATCAATAAAATGTATTGTTTTTCTTT
CAACCAGGTCTTCAAAATCCTTTAGATGCCATTTTTCATATCCAACCCGT
CATGGCGTTAACCATGGTTGTATTTGCTTTCTCAATGGAAGGTATGTTGT
ATTTAACAATATAAAAATAAACATAATAAAGAACCAGGATTTTTCGCAAA
GTACTCTCATTGCCTAATAAACTCTTTACAACAATAATTTTTCCCAATCC
CCCAGACCTTAAAGGATCCTTAGGTAAATCTTGAGCTGTGAAAATGAAAG
TCACTTTTAGTTTTAATAAGAACCTTTGCTGTACAAATTCCACTTCGACA
ATTGCTTCTGTGTATAATGAAATTTGATGATTTTCCTACCCCCGTTTATG
AGGCACCTGGTACGGATAGCCTTAGGATAATCTAAAGAAAATATACTATT
TTGCTGGCCATAATACACAAACGTTGTCCACACGCTGTAAACAACCTCGT
GCTTAACCTCGACTAATGTCATTATGGTGCTTAAAATTGTTATGTTTTAC
CGAGTATATGGGCTGGATACCAAGTTTTTTAAGGGCTTCTGACCATAGTA
AGAAAATTTGATTTTTCTTTTTAAAGATGGAGCTTTTTGTTTTAGATTAG
AAAAAGAGCAGATTGATTAAGGGTCAATCAATGTCAATTTCTTTTCACAG
GACCTCAATTTGCATCGTCATCCCTAATCTTTCGATATTCAAGCTTCCAT
GTTTTGCTGACATCCCTGGTTATCATACTGTCTGGTGCTTTTCTAGCCTT
TTTGTTGACAATATCAGAATATTTAATGGTGTCTCAAACTTCGAGTCTGG
CTTTATCAATCGCCGGTATATTAAAGGTATATTTTTTCTCCTGCCTTTTA
GCGTATTGTTGAGATTCAAAATCGAGACAAGTTTTTTTGGTTTAGAGGTT
AATGATAGATGTCTTGGTCTTAGTGTAGCGCCTTGGATTCTCAGAGTTCT
TAAAATCCATAAATTCAACTATACTATATATCACACCCTTTTCTTACAGA
CCTATTGGGAACCCTTTGCACTGAAAAAATTGCCCAAAATATCGTCCCCG
GTGGAAAATTTTCCTCCAATTTTTATACCCACTGAAAAGTAAACCAATCT
TCGCTGCAAAATGTTATGCTATTTTTTTTAATCCCCACTGAATTTTCTCT
GACTTGAAAACAAAAGAATTTCAATCCCCAGCCATAAAAGATATGGGGAT
ATAAATTCCATCGCGTCAGTCCGTTATTTTTATTCCCACTGGATGAAAAA
ATCATACCGGGTCTATGAGAAGGGAGTGTTATATGTGACTTAGTCGTCTT
CAGCACTGCTTAACGAAAATTCTTTTCCTCTTAGTTTCATCTTCAGTTTC
TTCAGATTTTTATTTATTATTTTGCTTGGGGAAATTTATTTACTTTTTTC
TTTCTAGGAACTAGTGACATTAACAATAACAGCAGAATTAGGTGGTGATC
GGATGAACGGTGTTAATGTGATTGGATTGATCATTTGTATGACTGGCATA
AGTGTTCATGTGGTTTCTAAAGCACTTAATGGTGAGTTGATTGATCCGTT
AATCTTTTGTCTTCAATCCTGTCAATGATTTAAGCCCGAAATAACTCCCA
AGAGAGCTATTTTCACTACCTGTAAATTCTTCTCGGGTCTGGAAATGTTC
GTCAATCTGTATAGATATAAAATGTAATAACCCAATATGACGACGAATGT
GTGAAGGATGTGTGTAATATTTGGCCATTTTTGGCTTTTGAGAGTCTTTT
TTCAAATTCAGTACGATAGCTTAATGTTTTGTTACTTTTAGAAAACAACA
GTGGTGGAAGTGTGAATAGAGCCTTAACAGACGATGAAAACCCTGATTCC
ATTGCATTCAAATCGTTACTTACTGAAGAAGATTTTGATGAAGAGATATT
GTTTGAATCGAATCATTCTTCAAAAGGTTGGAAAACACTCTCGACGTTGG
AGTAGCTGATGTGATTCTAGTGAAATGTGATAAAGTAGAGTCGGTATTTA
TTACGTGACCAGCCCAGTTATCATGAAACGGCCAGAAAACTCGGCCTCTT
TTAGCTCTTTTGAAGGAACAGGGTCTCGAACTGCCAACCCCTGGTTTGGT
TTGAGGTGTTGATGTCTGGACCACTCGGCACTCGCTCTACATATGACTTC
ACCTGTAACTACAACCATCCTTTGATTTACTCGAGTTTTCGAGTCAAGGT
TCAAATTATTCAAAATGCTTTGAAGTGTCAAGGTTCAAATACTGTTTGAT
TATCAGGAGCAGTAGCTGATAATTTGGATGATAATCAACATCTTAATACA
CTTAGGTGAAGTATAGTAAAAAATGACACTTTCTTACAAAGATAACCCTG
AAACTTGCAATAAAAGTAAATAAACTCCATTTGAAACGAGAAATCGGAAA
TCTGGTGTATTTCAATCATAGATGATATTTTTATTGCTTAGCTAAAATTT
TTATATTTTTCATTATTTTCTAACAGCTTAAATATAAAACCGAAAACAGA
ATGAAAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001745	XLOC_001745	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000025	supercontig	sc0000025:226857..230463 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.10254	4.4743	1.01905	1.00848	3.05964	2.35157	4.64673	1.25962	1.96734	0.939822	1.1847	2.81101	1.78915	2.08504	2.80363	3.12146	3.57915	2.788	2.53111	1.98714	6.60631	5.27716	15.076	10.2637	0.280261	1.77652	3.2565	2.39937	6.80432	8.89125

Blast

[Close]

BLAST of TCONS_00003151 vs. Swiss-Prot (Human)
Match: S35C2 (Solute carrier family 35 member C2 OS=Homo sapiens GN=SLC35C2 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.558e-36
Identity = 74/162 (45.68%), Postives = 104/162 (64.20%), Query Frame = 3

Query:    3 RWTTTQLLMQKKSMGLQNPLDAIFHIQPVMALTMVVFAFSMEGPQFASSSLIFRYSSFHVLLTSLVIILSGAFLAFLLTISEYLMVSQTSSLALSIAGILKELVTLTITAELGGDRMNGVNVIGLIICMTGISVHVVSKALNENNSGGSVNRALTD-DENPD 485
            RWT TQ+L+QK  +GLQNP+D +FH+QP+M L +       EG   ++S  IFR+    +LL  L  +  G  LAF L  SE+L+VS+TSSL LSIAGI KE+ TL + A L GD+++ +N +G  +C++GIS+HV  KAL+    GG   +AL     +PD
Sbjct:  179 RWTLTQMLLQKAELGLQNPIDTMFHLQPLMFLGLFPLFAVFEGLHLSTSEKIFRFQDTGLLLRVLGSLFLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGDQISLLNWLGFALCLSGISLHVALKALHSRGDGGP--KALKGLGSSPD 338

The following BLAST results are available for this feature:

BLAST of TCONS_00003151 vs. Swiss-Prot (Human)

BLAST of TCONS_00003151 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S35C2	2.558e-36	45.68	Solute carrier family 35 member C2 OS=Homo sapiens...	[more]

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TCONS_00003151 (transcript) - C. hemisphaerica