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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002844 ID=TCONS_00002844|Name=TCONS_00002844|organism=Clytia hemisphaerica|type=transcript|length=1985bp
AAACAACATGCATAAAAATTATCAGGGAAGTTAAAACATTTACTGCTGGC
CGACCTGCTAATGTATCATCAAACGTACCATCAAGTGATGCTACAGAAAA
TGTATCGTCAATTGTGTCGTCAATTGTGTCGTCAAATGTTTCGTCAAATG
CTTCGTCAAATGAAAGAACATCAAACAACCACCAAGTACAGACCTCGGAA
TTAACATCGATAACTTTCGAGGTGTTGGATGAGACCTCGGAATCTAACTT
TAACTTAGCTCCTGACTCAAACTTGaacaagagaaaaagaaaatacaaaa
ccCGGAATAAACCCgaggcaaagaaaaataaagaaaatgagtaTCAGCAA
CAAGAACCCTTCGATGACTACTTTTTGAACTTGCTACCAGATGAACAAGT
TCCGAACAATGGAGGGTGGAAAGTGACAAAGAAAGAACTTTTGGAAAAAG
CCTCCAATGGAGATTATATGGTGGAGACAATCAATAAACATCGGGAAACC
TCTGCTGGGATGGAGTATTTGGTCAGATGGGTCGGCTATAAGAATGAAAC
TtgggaaaaagctgaaaatattccaGTTGATGACATTGAGTACTATGGCA
AGAGAACTAATTTCAATGGGAGCTAATTTTTGCGTatttttctgtctttt
ttttctcaaacaattTTTAACATACCACGAACGATAaaagaattttgaca
aaaaaggaGTTGTCAAGCGCAGAAATTAGGTCTTACTAGTAGATCTCTGC
GAAATTGGTTCTCTTAGTATTTAGAAAAGTACCATTATAAGTTGGTTCAC
GATAAGTACGCACTCTTTTTCTTgtgcttataacttttgaagcgATTTTT
CAATCGTAAGaagtttggtatcgttggaaagatattagtgattGCGAATA
TTTTaaatgaagatttctttttaCTTGGACCGTATCTTTTAGAAAATTAT
AGGGGATATCTTGGTAGGGAGGGTCTTTGCTGAGCAATCAAACTACCTTG
GGGAAAAGTTGATCGGTTAAATCATGTCAAATATCTATGAATGCTGTTTG
GAGGGTCTTTATATCTTATCGTGAACAGGCTTTTTTCGCGCCTTTACATT
GTCTATTTCCAGATCTTTTGTCATAGACGATAACCAAAATGATAATTGAC
ACGCTATAGTTATATGAGCAAAGGCATgtgttttcaaccttttttttttc
CTGCGAGTACTTTAATGCAATCTTCTGGAATATTGTCATTCTCCTAAGTT
TAATTTTCTCTACAAATATATCCTGTCAAGATAAAAACAGCGAGAGGGTT
GGATGCGAATTTAGCCTAGATAATTGTAACAATAACTTTCAGCCTGTAGT
AGATTCATGCGCAATTTAGTCTGtaactttttagatttttttctcacaga
CCCTCCAGTGGGAacattgacgtcacttttaattttGAGGCTGTTGCAGT
ATTGATGCGCAAGCAGACAAAATTGGTGTATGCAAGTCACCCTAAGTGAT
GAAAAATCGTGCGGTGGGCTAGTATAGGGTAAATGACTTCGGACTTGAGG
TCAATTGTCAAGGCTAACGTCGTGTCCAACCCTCTCGTTGATTTTTTCTT
GATCTTTAATCACAACCCTGTAATACAATTGTCAATCACTTCACAGAAAA
TTGATTTGATGATTAATGCCACGTAGGTGgtcaatattttatcaaaaaga
ccgattatgaaattgacaatacAGTTTTTAACAATGTAAACAATAAGATA
TATTTGTTAATTGCTTTTAATCATTTTATATTTACATGGCCGTACATGGA
TTATTAACCTTCTAGACTGGTCTTCACCTGGTCTCCGGCACACGTGCCCT
CGGTCAATATTTTCCTAGATAGACTTCTTTCCTTgtgtttgttttcattt
aacatGTACACTTAATTAAGCACATTTTTATACATAacacttttttgtta
ttttgaaaatatacatTTACTACTGTAATTAAATG Run BLAST on NCBI transcript from alignment at sc0000023:1039356..1041718+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002844 ID=TCONS_00002844|Name=TCONS_00002844|organism=Clytia hemisphaerica|type=transcript|length=2363bp|location=Sequence derived from alignment at sc0000023:1039356..1041718+ (Clytia hemisphaerica)
AAACAACATGCATAAAAATTATCAGGGAAGTTAAAACATTTACTGCTGGT
AGgttatgaaaataaatttattttaaagtttttgtatgcttttcttttca
taaacccgttttcattttatataaatttattttcaagttCTATTATTGAA
GGTTACTGAAGGCATATAAATAGCAAATTGAACCTCAATTCGATTTTACC
GCATACTTAAAAACTGAGATAAATGCATGCCCATAGTAATGGTATGACTA
AAGAACTTAGAAAGCTCATTTTGAATTGCAAAGCACAGAATAATATTACT
CATAAAGAATTCCAGCATTACCAATGCATCTGCTactagtttctttttaa
ataaataaagtcCTTGAATTCATTAGAAAAAACTATCGAATTAGCCTTAC
CCAatgtatttttatttgttttctagGCCGACCTGCTAATGTATCATCAA
ACGTACCATCAAGTGATGCTACAGAAAATGTATCGTCAATTGTGTCGTCA
ATTGTGTCGTCAAATGTTTCGTCAAATGCTTCGTCAAATGAAAGAACATC
AAACAACCACCAAGTACAGACCTCGGAATTAACATCGATAACTTTCGAGG
TGTTGGATGAGACCTCGGAATCTAACTTTAACTTAGCTCCTGACTCAAAC
TTGaacaagagaaaaagaaaatacaaaaccCGGAATAAACCCgaggcaaa
gaaaaataaagaaaatgagtaTCAGCAACAAGAACCCTTCGATGACTACT
TTTTGAACTTGCTACCAGATGAACAAGTTCCGAACAATGGAGGGTGGAAA
GTGACAAAGAAAGAACTTTTGGAAAAAGCCTCCAATGGAGATTATATGGT
GGAGACAATCAATAAACATCGGGAAACCTCTGCTGGGATGGAGTATTTGG
TCAGATGGGTCGGCTATAAGAATGAAACTtgggaaaaagctgaaaatatt
ccaGTTGATGACATTGAGTACTATGGCAAGAGAACTAATTTCAATGGGAG
CTAATTTTTGCGTatttttctgtcttttttttctcaaacaattTTTAACA
TACCACGAACGATAaaagaattttgacaaaaaaggaGTTGTCAAGCGCAG
AAATTAGGTCTTACTAGTAGATCTCTGCGAAATTGGTTCTCTTAGTATTT
AGAAAAGTACCATTATAAGTTGGTTCACGATAAGTACGCACTCTTTTTCT
TgtgcttataacttttgaagcgATTTTTCAATCGTAAGaagtttggtatc
gttggaaagatattagtgattGCGAATATTTTaaatgaagatttcttttt
aCTTGGACCGTATCTTTTAGAAAATTATAGGGGATATCTTGGTAGGGAGG
GTCTTTGCTGAGCAATCAAACTACCTTGGGGAAAAGTTGATCGGTTAAAT
CATGTCAAATATCTATGAATGCTGTTTGGAGGGTCTTTATATCTTATCGT
GAACAGGCTTTTTTCGCGCCTTTACATTGTCTATTTCCAGATCTTTTGTC
ATAGACGATAACCAAAATGATAATTGACACGCTATAGTTATATGAGCAAA
GGCATgtgttttcaaccttttttttttcCTGCGAGTACTTTAATGCAATC
TTCTGGAATATTGTCATTCTCCTAAGTTTAATTTTCTCTACAAATATATC
CTGTCAAGATAAAAACAGCGAGAGGGTTGGATGCGAATTTAGCCTAGATA
ATTGTAACAATAACTTTCAGCCTGTAGTAGATTCATGCGCAATTTAGTCT
GtaactttttagatttttttctcacagaCCCTCCAGTGGGAacattgacg
tcacttttaattttGAGGCTGTTGCAGTATTGATGCGCAAGCAGACAAAA
TTGGTGTATGCAAGTCACCCTAAGTGATGAAAAATCGTGCGGTGGGCTAG
TATAGGGTAAATGACTTCGGACTTGAGGTCAATTGTCAAGGCTAACGTCG
TGTCCAACCCTCTCGTTGATTTTTTCTTGATCTTTAATCACAACCCTGTA
ATACAATTGTCAATCACTTCACAGAAAATTGATTTGATGATTAATGCCAC
GTAGGTGgtcaatattttatcaaaaagaccgattatgaaattgacaatac
AGTTTTTAACAATGTAAACAATAAGATATATTTGTTAATTGCTTTTAATC
ATTTTATATTTACATGGCCGTACATGGATTATTAACCTTCTAGACTGGTC
TTCACCTGGTCTCCGGCACACGTGCCCTCGGTCAATATTTTCCTAGATAG
ACTTCTTTCCTTgtgtttgttttcatttaacatGTACACTTAATTAAGCA
CATTTTTATACATAacacttttttgttattttgaaaatatacatTTACTA
CTGTAATTAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002844-exon-sc0000023-1491911889:1039356..1039403 | TCONS_00002844-exon-sc0000023-1491911889:1039356..1039403 | Clytia hemisphaerica | exon |
| TCONS_00002844-exon-sc0000023-1510915933:1039356..1039403 | TCONS_00002844-exon-sc0000023-1510915933:1039356..1039403 | Clytia hemisphaerica | exon |
| TCONS_00002844-exon-sc0000023-1575043694:1039356..1039403 | TCONS_00002844-exon-sc0000023-1575043694:1039356..1039403 | Clytia hemisphaerica | exon |
| TCONS_00002844-exon-sc0000023-1491911889:1039782..1041718 | TCONS_00002844-exon-sc0000023-1491911889:1039782..1041718 | Clytia hemisphaerica | exon |
| TCONS_00002844-exon-sc0000023-1510915933:1039782..1041718 | TCONS_00002844-exon-sc0000023-1510915933:1039782..1041718 | Clytia hemisphaerica | exon |
| TCONS_00002844-exon-sc0000023-1575043694:1039782..1041718 | TCONS_00002844-exon-sc0000023-1575043694:1039782..1041718 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000023 | supercontig | sc0000023:1039356..1041718 + |
Blast
The following BLAST results are available for this feature:
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