TCONS_00002888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002888
Unique NameTCONS_00002888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002888 ID=TCONS_00002888|Name=TCONS_00002888|organism=Clytia hemisphaerica|type=transcript|length=1467bp
TTAGTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGATGCAACAGAC
AGGGATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATGGCATCCTGA
CAAAAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAGATTTAGGCG
CTGCCTATGAGGTACTCTCAGACGcagacaaaagaaaaacatatgaTAAG
CATGGAGAAGAAGGCGTCCAGAAAATGGGCGGCGGAGGTGGTGATGGATT
TGACCCCTTTGAATCATTTTTTGGTGGATTCGGAGGATTCGGTTTTGGCG
GTGGAAATAAACAAAGAGGCCATGGTGAAATTCCCAAAGGTGGAAATATT
GTTATGGATCTTGAAGTCACATTAGAAGAATTATATACTGGAGATTTTGT
CGAGGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGCGGTACTCGAC
GTTGCAACTGTCGAATGGAGATGAGGACACATCAATTAGGACCTGGACGT
TTCCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCAATAAACGATT
CATTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAAGGAATGCAAG
ACGGTCAAGAATATCCTTTCGTGTCTGAAGGAGAACCACATATTGATGGA
GAGCCAGgagatttgatttttaaaattaaagaaCTAAAGCATAAAACGTT
CGAAAGAAGGGGAGATGATTTGTTCACTAACATCACTATCAGTTTAGTTG
ACGCCTTGAACGGTTTCGATATGGAATTCAAACATCTAGATGGTCACGTG
GTCAAAGTTCACCGCGAAAAGATCACATGGCCTGGTGCCAAAATCAAGAA
GAAGGGAGAAGGGATGCCCAATTATCATAATAATTTGGACAAGGGTGTCT
TAGTGATCACTTTCGATGTTGATTTCCCAAAAGGAGAATTGGCAGAGGAA
CAAAAAGAAGcaATAAAAACGATATTGAATCAAGATTCGAAACAAAAGAT
ATACAATGGATTACAAGTATGATAGATAGGAAGCAATTGACATTTATTAT
TTCATAGCTCAAATGGCTATGATATGTTGggaaaaatttctattttatgt
ttttcgtcaaattttttcatgaatgtatttttttgttcgttcgattttta
gatttatattgatgtatacatatttaactttttttcgaatttctaGGCCT
TTTACAAAGTTCAAACGTTTTATAgaaattaattttggaaaattcagaAT
TTCATTGCGTTGTTACAAACTTCGAAAAACAGCTTTTAAaccttaatttt
catttttgatacaggtgagaaatgtttttgagaaaattaagaTTCTTTAT
AATGTTTATTCCAgttttatttgttgtttttcttgtaAACTTTATTGAAT
AAGagcaaagttttttgaaaatgaatttatttaagaaaggttACGATACA
AGAAAATGCTTGTTGCG
Run BLAST on NCBI

protein sequence of TCONS_00002888-protein

>TCONS_00002888-protein ID=TCONS_00002888-protein|Name=TCONS_00002888-protein|organism=Clytia hemisphaerica|type=polypeptide|length=339bp
SRDFYKILGVRKDATDRDIKKAYRKLAMKWHPDKNPDDPKAQDKFQDLGA
AYEVLSDADKRKTYDKHGEEGVQKMGGGGGDGFDPFESFFGGFGGFGFGG
GNKQRGHGEIPKGGNIVMDLEVTLEELYTGDFVEVLRAKPFAETTSGTRR
CNCRMEMRTHQLGPGRFQMMQEEVCDECPNKRFIIKDQLLEIEIEQGMQD
GQEYPFVSEGEPHIDGEPGDLIFKIKELKHKTFERRGDDLFTNITISLVD
ALNGFDMEFKHLDGHVVKVHREKITWPGAKIKKKGEGMPNYHNNLDKGVL
VITFDVDFPKGELAEEQKEAIKTILNQDSKQKIYNGLQV
Run BLAST on NCBI

transcript from alignment at sc0000023:736979..742466-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002888 ID=TCONS_00002888|Name=TCONS_00002888|organism=Clytia hemisphaerica|type=transcript|length=5488bp|location=Sequence derived from alignment at sc0000023:736979..742466- (Clytia hemisphaerica)
TTAGTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGATGCAACAGAC
AGGGATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATGGCATCCTGA
CAAAAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAGATTTAGGCG
CTGCCTATGAGGTAAATTTTAATGAACACATCATGAGACAAGTGTTGATA
ATGTGTTCACCAAGTCTATTATTTTAAGATGTTAGGTTTTAAAGCTTTAA
AACTTGTAAAGTTGACTGAAAGTTTGAAAATATTTTTCTACAATGAATGC
AAATAATATTCTCTGACAGTCCAGGATAACTTTCAATGATTGCATTAATG
TCTGATATCACTCCTAATAAGATACTTTATTATAAACACTCATGATCACT
GGAGAAAATATAATAAAAGTGTCCAGTTAAAGCTTGTCCACTATAATCTG
GGTACATACATATTTTAGGGATTTTTTGCTACCAGAAAACAGAATAATTT
CTTCAAGAAAAAGAATTAGCCGTGGAAAAAGGTTTAAAAAGTAAAGAAAG
TCTATTAAGTATTCAATATTCTAGCACTAGTCTAAAGCAAAACTTAAACC
CTCACTTCCACCACGACTCTGCCCTGGACCAGCTTTTACTCATCATTACC
TAGATGATCATAGAAGCAAGAACTAGACTTACGATTGACCTGAGTTTTAC
TTTATAATTCTAAAATCACTTATCTTAGGTACTCTCAGACGCAGACAAAA
GAAAAACATATGATAAGCATGGAGAAGAAGGCGTCCAGAAAATGGGCGGC
GGAGGTGGTGATGGATTTGACCCCTTTGAATCGTATGTCTTATTTCTTTT
TCAGATGTTTTTTGTTTTGTTTTTGACATTACTTTAATTAGTACTTTCAA
GGGATAATCACTATTTAAGATTTTTTTGGCCTGGAGACACTTTCTGTTCT
TTGTCACTGCATTTTGTCAGTTTTTAGATTACTTCAAAATAATGTTCTTT
AAAGGGATGATCAGAATTTAAGATTTGGAGCAATACTGGCAATATCTTTA
TTTTCATTTTATTTTTACCTTTTCAAAAATAAATAGACATCTGATTTTCA
AAAGGTACCTGTCAGCCAAAATTTTCAAGCTATATTGTTTCGGTGAGAGG
TAGTTTATGCACTTGGTATGTTTATGATCTAAGGTATAAAGTTGAAAGTT
ATTTAAAACATTTCCTCCCTTGATTGGCTATAATTTTTCTTTAAATCAGA
TTTTTTGGTGGATTCGGAGGATTCGGTTTTGGCGGTGGAAATAAACAAAG
AGGCCATGGTGAAATTCCCAAAGGTGGAAATATTGTTATGGATCTTGAAG
TCACATTAGAAGAATTATATACTGGAGATTTTGTCGAGGTAAATTATCTA
CAGTTCTATTAATCCAATTAGCTTTAAAAAGTTTTTTCAACAGCCAGACT
TTTCCACTAATTTAATGCTGAATTTTAGTCGTAACTGGTCGTAATAATAT
TTTAAGACTATTGATATTCTAGGAAGAACCAGAATTGACACATTTGTGAT
TGTTTCGTCTTAAAAAACTAGTTCCATTCAAATCTCAAAGCTCTTTGCTT
TTCTTTTATATAGTAGTGACCAACTACAACCTTTCACTTTTCTCCTTTTT
CGCAGGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGCGGTACTCGA
CGTTGCAACTGTCGAATGGAGATGAGGACACATCAATTAGGACCTGGACG
TTTCCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCAATAAACGAT
TCATTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAAGGAATGCAA
GACGGTCAAGAATATCCTTTCGTGTCTGAAGGTGAGTTGTACCAACATTT
TTTGGACCTACCCCGATGGTGGGGTGGAGGTCCTATAAATTAATCTTTAT
CCGTTTGTTCGTTCGTTCGCTCGCTCGCTCGCTCGTTATTAGCTAACCTC
ATGATTGGCTCATTAGTTTTTTCTGATTTTTTTTCTCAAAAAACGCATGT
TTATCCATAAGAATCACTATTAGTAATTTTGCTCACAAAGTCTCGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCACTTGTTGTATTCTAACTTCAACTTTTTCTGGGGACCTTTGTACGTA
GAGGGGGTAAGCAATATTGAAACACTGGGAGGATGGAAATGTAGGGGGTC
TAATAAAATGGTGGCTTCGACACAGAGCAAGTTTCCTTCGAAACAGATTT
TCTTTGAAAGAGGGGCGGGTAAAGTTTCATTACAGATAGAGCTTTCATAC
CCCTCTGCAATCTATGCCACAGTCAACTTTGATTATCGATGGTTTCTAAT
GGCAATGTGAGTCAGGCTATCAATATATTAGAAAAAGGTTGCTTAACTCA
CATTGAGTTATAGTTGGGTTCTATGAATTTGAGCGCTGTGAATCTATGCT
ATGTTTTTTTCTATTATTCCAGGAGAACCACATATTGATGGAGAGCCAGG
AGATTTGATTTTTAAAATTAAAGAACTAAAGTAAGTAAAGATTCATGAAA
AACCAAACATTTTTACCAAAAATTTTGTGCCTAATAAAGAGGGATTTGGT
TTTAACGGCTGAAACTCCTCATTTCAGAGGGTCCCAAGTGAGTGTTTTGA
TAGCTAAAAATATTTGAAAAAGTTCATAAAAGTTAGTTTAGTACTTTAAC
TCTCATAAGTTTGTTCAATTCATAGACATAAAACATTCGAAGGAAGGAAG
GTTCGAAATCAGTTTAGTACTAAACTCTCATAAATTTGCTCAATTTCTAG
ACATAAAACGTTCGAAATCAGTTTAGTACTAAACTCTCATAAATTTGTTC
AATTTCTAGACATAAAACGTTCGAAATCAGTTTAGTACTAAAATCTCATA
AATTTGTTCAATTTCTAGGCATAAAACGTTCGAAAGAAGGGGAGATGATT
TGTTCACTAACATCACTATCAGTTTAGTTGACGCCTTGAACGGTTTCGAT
ATGGAATTCAAACATCTAGATGGTCACGTGGTCAAAGTTCACCGCGAAAA
GATCACATGGCCTGGTGCCAAAATCAAGAAGAAGGGAGAAGGGATGCCCA
ATTATCATAATAATTTGGACAAGGGTGTCTTAGTGATCACTTTCGATGTT
GATTTCCCAAAAGGAGAATTGGCAGAGGAACAAAAAGAAGGTGAGAAATC
TGGTATAATCTCTGATAATTATGATTCTAGGGTTTTAATCAATAAGGTAT
ATAAAGATCTCCTATGAATCCCCTATGTAAAGCGCTTGATTGGAAGTAAC
ACTTGCAGCTAGAATTCGAAAAATGTGAAACACAAAACAAAGAAAGTGCT
AGATTCAATCCGTTATCCAAAATGCGGCGCAAATTTTTTCTTTGCCTAGA
AAAGGCTGAAGATACCTGGTAGGTGTGAAGTTGTTTGAAGAGGCGTTGTA
ATCCTTTTGGCAACCTTTGCCCTAAAAAAGGAAAGGCTGAAGATATTTCT
CTAGCCTTCAACTTGACAACTTGAAGCTCGGTTTCTGATTAATTTCAGAA
ATAATTATCGCTCTTTTGATAGTTTCCCTTCGTTGGTTTTCTTCCTCAAA
ATTCTATAATAAAGGTTGTGGTTGTAAGTTTTAAAGCTCTAGAAAATTGA
GCTTTTTCTGTATCTGGCTGATTTCGATTTGATTTGATTTCTTTTTTTTT
TTTAATTTCAGCAATAAAAACGATATTGAATCAAGATTCGAAACAAAAGA
TATACAATGGATTACAAGTATGATAGATAGGAAGCAATTGACATTTATTA
TTTCATAGGTAGGATTTAAAAAGGGCTTTATATTTTATCGTCAGAAACTT
TGAGGCAAAGCCAAAATGGCACTTTGATGTAAACTTATCCTTGGCGGAAT
TTATTTTTGCGATGATTAGACATTTCTATTGGATCGCCATCGAGTCTCGA
TTTTCAGCGAATTTTGTCTTAAAAATACACAAAACGTATTTTCCGTTTGA
TAACAGTTTCCACGCCTATAGCATAAGTGTGTGTGTTCTCAGACCTGGAG
TGGCCCAAAATTAAAATCCCATTTCTAGCTCAAATGGCTATGATATGTTG
GGAAAAATTTCTATTTTATGTTTTTCGTCAAATTTTTTCATGAATGTATT
TTTTTGTTCGTTCGATTTTTAGATTTATATTGATGTATACATATTTAACT
TTTTTTCGAATTTCTAGGCCTTTTACAAAGTTCAAACGTTTTATAGAAAT
TAATTTTGGAAAATTCAGAATTTCATTGCGTTGTTACAAACTTCGAAAAA
CAGCTTTTAAACCTTAATTTTCATTTTTGATACAGGTGAGAAATGTTTTT
GAGAAAATTAAGATTCTTTATAATGTTTATTCCAGTTTTATTTGTTGTTT
TTCTTGTAAACTTTATTGAATAAGAGCAAAGTTTTTTGAAAATGAATTTA
TTTAAGAAAGGTTACGATACAAGAAAATGCTTGTTGCG

Coding sequence (CDS) from alignment at sc0000023:736979..742466-

>TCONS_00002888 ID=TCONS_00002888|Name=TCONS_00002888|organism=Clytia hemisphaerica|type=CDS|length=7140bp|location=Sequence derived from alignment at sc0000023:736979..742466- (Clytia hemisphaerica)
CAATAAAAACGATATTGAATCAAGATTCGAAACAAAAGATATACAATGGA
TTACAAGTATGAGCATAAAACGTTCGAAAGAAGGGGAGATGATTTGTTCA
CTAACATCACTATCAGTTTAGTTGACGCCTTGAACGGTTTCGATATGGAA
TTCAAACATCTAGATGGTCACGTGGTCAAAGTTCACCGCGAAAAGATCAC
ATGGCCTGGTGCCAAAATCAAGAAGAAGGGAGAAGGGATGCCCAATTATC
ATAATAATTTGGACAAGGGTGTCTTAGTGATCACTTTCGATGTTGATTTC
CCAAAAGGAGAATTGGCAGAGGAACAAAAAGAAGGAGAACCACATATTGA
TGGAGAGCCAGGAGATTTGATTTTTAAAATTAAAGAACTAAAGTTTTAAG
GGCAAAACCATTCGCTGAAACAACGAGCGGTACTCGACGTTGCAACTGTC
GAATGGAGATGAGGACACATCAATTAGGACCTGGACGTTTCCAAATGATG
CAAGAAGAAGTTTGTGATGAATGCCCCAATAAACGATTCATTATCAAAGA
CCAATTGTTAGAGATTGAAATCGAACAAGGAATGCAAGACGGTCAAGAAT
ATCCTTTCGTGTCTGAAGATTTTTTGGTGGATTCGGAGGATTCGGTTTTG
GCGGTGGAAATAAACAAAGAGGCCATGGTGAAATTCCCAAAGGTGGAAAT
ATTGTTATGGATCTTGAAGTCACATTAGAAGAATTATATACTGGAGATTT
TGTCGAGGTACTCTCAGACGCAGACAAAAGAAAAACATATGATAAGCATG
GAGAAGAAGGCGTCCAGAAAATGGGCGGCGGAGGTGGTGATGGATTTGAC
CCCTTTGAATCAGTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGAT
GCAACAGACAGGGATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATG
GCATCCTGACAAAAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAG
ATTTAGGCGCTGCCTATGAGCAATAAAAACGATATTGAATCAAGATTCGA
AACAAAAGATATACAATGGATTACAAGTATGAGCATAAAACGTTCGAAAG
AAGGGGAGATGATTTGTTCACTAACATCACTATCAGTTTAGTTGACGCCT
TGAACGGTTTCGATATGGAATTCAAACATCTAGATGGTCACGTGGTCAAA
GTTCACCGCGAAAAGATCACATGGCCTGGTGCCAAAATCAAGAAGAAGGG
AGAAGGGATGCCCAATTATCATAATAATTTGGACAAGGGTGTCTTAGTGA
TCACTTTCGATGTTGATTTCCCAAAAGGAGAATTGGCAGAGGAACAAAAA
GAAGGAGAACCACATATTGATGGAGAGCCAGGAGATTTGATTTTTAAAAT
TAAAGAACTAAAGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGCGG
TACTCGACGTTGCAACTGTCGAATGGAGATGAGGACACATCAATTAGGAC
CTGGACGTTTCCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCAAT
AAACGATTCATTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAAGG
AATGCAAGACGGTCAAGAATATCCTTTCGTGTCTGAAGATTTTTTGGTGG
ATTCGGAGGATTCGGTTTTGGCGGTGGAAATAAACAAAGAGGCCATGGTG
AAATTCCCAAAGGTGGAAATATTGTTATGGATCTTGAAGTCACATTAGAA
GAATTATATACTGGAGATTTTGTCGAGGTACTCTCAGACGCAGACAAAAG
AAAAACATATGATAAGCATGGAGAAGAAGGCGTCCAGAAAATGGGCGGCG
GAGGTGGTGATGGATTTGACCCCTTTGAATCAGTCGAGACTTTTATAAGA
TCCTTGGAGTTCGAAAAGATGCAACAGACAGGGATATCAAGAAAGCATAC
AGAAAGCTTGCTATGAAATGGCATCCTGACAAAAATCCAGACGATCCAAA
AGCTCAAGATAAATTTCAAGATTTAGGCGCTGCCTATGAGCAATAAAAAC
GATATTGAATCAAGATTCGAAACAAAAGATATACAATGGATTACAAGTAT
GAGCATAAAACGTTCGAAAGAAGGGGAGATGATTTGTTCACTAACATCAC
TATCAGTTTAGTTGACGCCTTGAACGGTTTCGATATGGAATTCAAACATC
TAGATGGTCACGTGGTCAAAGTTCACCGCGAAAAGATCACATGGCCTGGT
GCCAAAATCAAGAAGAAGGGAGAAGGGATGCCCAATTATCATAATAATTT
GGACAAGGGTGTCTTAGTGATCACTTTCGATGTTGATTTCCCAAAAGGAG
AATTGGCAGAGGAACAAAAAGAAGGAGAACCACATATTGATGGAGAGCCA
GGAGATTTGATTTTTAAAATTAAAGAACTAAAGTTTTAAGGGCAAAACCA
TTCGCTGAAACAACGAGCGGTACTCGACGTTGCAACTGTCGAATGGAGAT
GAGGACACATCAATTAGGACCTGGACGTTTCCAAATGATGCAAGAAGAAG
TTTGTGATGAATGCCCCAATAAACGATTCATTATCAAAGACCAATTGTTA
GAGATTGAAATCGAACAAGGAATGCAAGACGGTCAAGAATATCCTTTCGT
GTCTGAAGATTTTTTGGTGGATTCGGAGGATTCGGTTTTGGCGGTGGAAA
TAAACAAAGAGGCCATGGTGAAATTCCCAAAGGTGGAAATATTGTTATGG
ATCTTGAAGTCACATTAGAAGAATTATATACTGGAGATTTTGTCGAGGTA
CTCTCAGACGCAGACAAAAGAAAAACATATGATAAGCATGGAGAAGAAGG
CGTCCAGAAAATGGGCGGCGGAGGTGGTGATGGATTTGACCCCTTTGAAT
CAGTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGATGCAACAGACA
GGGATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATGGCATCCTGAC
AAAAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAGATTTAGGCGC
TGCCTATGAGCAATAAAAACGATATTGAATCAAGATTCGAAACAAAAGAT
ATACAATGGATTACAAGTATGAGCATAAAACGTTCGAAAGAAGGGGAGAT
GATTTGTTCACTAACATCACTATCAGTTTAGTTGACGCCTTGAACGGTTT
CGATATGGAATTCAAACATCTAGATGGTCACGTGGTCAAAGTTCACCGCG
AAAAGATCACATGGCCTGGTGCCAAAATCAAGAAGAAGGGAGAAGGGATG
CCCAATTATCATAATAATTTGGACAAGGGTGTCTTAGTGATCACTTTCGA
TGTTGATTTCCCAAAAGGAGAATTGGCAGAGGAACAAAAAGAAGGAGAAC
CACATATTGATGGAGAGCCAGGAGATTTGATTTTTAAAATTAAAGAACTA
AAGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGCGGTACTCGACGT
TGCAACTGTCGAATGGAGATGAGGACACATCAATTAGGACCTGGACGTTT
CCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCAATAAACGATTCA
TTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAAGGAATGCAAGAC
GGTCAAGAATATCCTTTCGTGTCTGAAGATTTTTTGGTGGATTCGGAGGA
TTCGGTTTTGGCGGTGGAAATAAACAAAGAGGCCATGGTGAAATTCCCAA
AGGTGGAAATATTGTTATGGATCTTGAAGTCACATTAGAAGAATTATATA
CTGGAGATTTTGTCGAGGTACTCTCAGACGCAGACAAAAGAAAAACATAT
GATAAGCATGGAGAAGAAGGCGTCCAGAAAATGGGCGGCGGAGGTGGTGA
TGGATTTGACCCCTTTGAATCAGTCGAGACTTTTATAAGATCCTTGGAGT
TCGAAAAGATGCAACAGACAGGGATATCAAGAAAGCATACAGAAAGCTTG
CTATGAAATGGCATCCTGACAAAAATCCAGACGATCCAAAAGCTCAAGAT
AAATTTCAAGATTTAGGCGCTGCCTATGAGCAATAAAAACGATATTGAAT
CAAGATTCGAAACAAAAGATATACAATGGATTACAAGTATGAGCATAAAA
CGTTCGAAAGAAGGGGAGATGATTTGTTCACTAACATCACTATCAGTTTA
GTTGACGCCTTGAACGGTTTCGATATGGAATTCAAACATCTAGATGGTCA
CGTGGTCAAAGTTCACCGCGAAAAGATCACATGGCCTGGTGCCAAAATCA
AGAAGAAGGGAGAAGGGATGCCCAATTATCATAATAATTTGGACAAGGGT
GTCTTAGTGATCACTTTCGATGTTGATTTCCCAAAAGGAGAATTGGCAGA
GGAACAAAAAGAAGGAGAACCACATATTGATGGAGAGCCAGGAGATTTGA
TTTTTAAAATTAAAGAACTAAAGTTTTAAGGGCAAAACCATTCGCTGAAA
CAACGAGCGGTACTCGACGTTGCAACTGTCGAATGGAGATGAGGACACAT
CAATTAGGACCTGGACGTTTCCAAATGATGCAAGAAGAAGTTTGTGATGA
ATGCCCCAATAAACGATTCATTATCAAAGACCAATTGTTAGAGATTGAAA
TCGAACAAGGAATGCAAGACGGTCAAGAATATCCTTTCGTGTCTGAAGAT
TTTTTGGTGGATTCGGAGGATTCGGTTTTGGCGGTGGAAATAAACAAAGA
GGCCATGGTGAAATTCCCAAAGGTGGAAATATTGTTATGGATCTTGAAGT
CACATTAGAAGAATTATATACTGGAGATTTTGTCGAGGTACTCTCAGACG
CAGACAAAAGAAAAACATATGATAAGCATGGAGAAGAAGGCGTCCAGAAA
ATGGGCGGCGGAGGTGGTGATGGATTTGACCCCTTTGAATCAGTCGAGAC
TTTTATAAGATCCTTGGAGTTCGAAAAGATGCAACAGACAGGGATATCAA
GAAAGCATACAGAAAGCTTGCTATGAAATGGCATCCTGACAAAAATCCAG
ACGATCCAAAAGCTCAAGATAAATTTCAAGATTTAGGCGCTGCCTATGAG
CAATAAAAACGATATTGAATCAAGATTCGAAACAAAAGATATACAATGGA
TTACAAGTATGAGCATAAAACGTTCGAAAGAAGGGGAGATGATTTGTTCA
CTAACATCACTATCAGTTTAGTTGACGCCTTGAACGGTTTCGATATGGAA
TTCAAACATCTAGATGGTCACGTGGTCAAAGTTCACCGCGAAAAGATCAC
ATGGCCTGGTGCCAAAATCAAGAAGAAGGGAGAAGGGATGCCCAATTATC
ATAATAATTTGGACAAGGGTGTCTTAGTGATCACTTTCGATGTTGATTTC
CCAAAAGGAGAATTGGCAGAGGAACAAAAAGAAGGAGAACCACATATTGA
TGGAGAGCCAGGAGATTTGATTTTTAAAATTAAAGAACTAAAGTTTTAAG
GGCAAAACCATTCGCTGAAACAACGAGCGGTACTCGACGTTGCAACTGTC
GAATGGAGATGAGGACACATCAATTAGGACCTGGACGTTTCCAAATGATG
CAAGAAGAAGTTTGTGATGAATGCCCCAATAAACGATTCATTATCAAAGA
CCAATTGTTAGAGATTGAAATCGAACAAGGAATGCAAGACGGTCAAGAAT
ATCCTTTCGTGTCTGAAGATTTTTTGGTGGATTCGGAGGATTCGGTTTTG
GCGGTGGAAATAAACAAAGAGGCCATGGTGAAATTCCCAAAGGTGGAAAT
ATTGTTATGGATCTTGAAGTCACATTAGAAGAATTATATACTGGAGATTT
TGTCGAGGTACTCTCAGACGCAGACAAAAGAAAAACATATGATAAGCATG
GAGAAGAAGGCGTCCAGAAAATGGGCGGCGGAGGTGGTGATGGATTTGAC
CCCTTTGAATCAGTCGAGACTTTTATAAGATCCTTGGAGTTCGAAAAGAT
GCAACAGACAGGGATATCAAGAAAGCATACAGAAAGCTTGCTATGAAATG
GCATCCTGACAAAAATCCAGACGATCCAAAAGCTCAAGATAAATTTCAAG
ATTTAGGCGCTGCCTATGAGCAATAAAAACGATATTGAATCAAGATTCGA
AACAAAAGATATACAATGGATTACAAGTATGAGCATAAAACGTTCGAAAG
AAGGGGAGATGATTTGTTCACTAACATCACTATCAGTTTAGTTGACGCCT
TGAACGGTTTCGATATGGAATTCAAACATCTAGATGGTCACGTGGTCAAA
GTTCACCGCGAAAAGATCACATGGCCTGGTGCCAAAATCAAGAAGAAGGG
AGAAGGGATGCCCAATTATCATAATAATTTGGACAAGGGTGTCTTAGTGA
TCACTTTCGATGTTGATTTCCCAAAAGGAGAATTGGCAGAGGAACAAAAA
GAAGGAGAACCACATATTGATGGAGAGCCAGGAGATTTGATTTTTAAAAT
TAAAGAACTAAAGTTTTAAGGGCAAAACCATTCGCTGAAACAACGAGCGG
TACTCGACGTTGCAACTGTCGAATGGAGATGAGGACACATCAATTAGGAC
CTGGACGTTTCCAAATGATGCAAGAAGAAGTTTGTGATGAATGCCCCAAT
AAACGATTCATTATCAAAGACCAATTGTTAGAGATTGAAATCGAACAAGG
AATGCAAGACGGTCAAGAATATCCTTTCGTGTCTGAAGATTTTTTGGTGG
ATTCGGAGGATTCGGTTTTGGCGGTGGAAATAAACAAAGAGGCCATGGTG
AAATTCCCAAAGGTGGAAATATTGTTATGGATCTTGAAGTCACATTAGAA
GAATTATATACTGGAGATTTTGTCGAGGTACTCTCAGACGCAGACAAAAG
AAAAACATATGATAAGCATGGAGAAGAAGGCGTCCAGAAAATGGGCGGCG
GAGGTGGTGATGGATTTGACCCCTTTGAATCAGTCGAGACTTTTATAAGA
TCCTTGGAGTTCGAAAAGATGCAACAGACAGGGATATCAAGAAAGCATAC
AGAAAGCTTGCTATGAAATGGCATCCTGACAAAAATCCAGACGATCCAAA
AGCTCAAGATAAATTTCAAGATTTAGGCGCTGCCTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001568XLOC_001568Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002888-proteinTCONS_00002888-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002888-exon-sc0000023-1575043694:742306..742466TCONS_00002888-exon-sc0000023-1575043694:742306..742466Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1575043694:741635..741738TCONS_00002888-exon-sc0000023-1575043694:741635..741738Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1575043694:741079..741217TCONS_00002888-exon-sc0000023-1575043694:741079..741217Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1575043694:740586..740811TCONS_00002888-exon-sc0000023-1575043694:740586..740811Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1575043694:738937..738994TCONS_00002888-exon-sc0000023-1575043694:738937..738994Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1575043694:738277..738548TCONS_00002888-exon-sc0000023-1575043694:738277..738548Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1575043694:737659..737755TCONS_00002888-exon-sc0000023-1575043694:737659..737755Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1575043694:736979..737388TCONS_00002888-exon-sc0000023-1575043694:736979..737388Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1510915933:742306..742466TCONS_00002888-exon-sc0000023-1510915933:742306..742466Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1510915933:741635..741738TCONS_00002888-exon-sc0000023-1510915933:741635..741738Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1510915933:741079..741217TCONS_00002888-exon-sc0000023-1510915933:741079..741217Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1510915933:740586..740811TCONS_00002888-exon-sc0000023-1510915933:740586..740811Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1510915933:738937..738994TCONS_00002888-exon-sc0000023-1510915933:738937..738994Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1510915933:738277..738548TCONS_00002888-exon-sc0000023-1510915933:738277..738548Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1510915933:737659..737755TCONS_00002888-exon-sc0000023-1510915933:737659..737755Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1510915933:736979..737388TCONS_00002888-exon-sc0000023-1510915933:736979..737388Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1491911889:742306..742466TCONS_00002888-exon-sc0000023-1491911889:742306..742466Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1491911889:741635..741738TCONS_00002888-exon-sc0000023-1491911889:741635..741738Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1491911889:741079..741217TCONS_00002888-exon-sc0000023-1491911889:741079..741217Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1491911889:740586..740811TCONS_00002888-exon-sc0000023-1491911889:740586..740811Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1491911889:738937..738994TCONS_00002888-exon-sc0000023-1491911889:738937..738994Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1491911889:738277..738548TCONS_00002888-exon-sc0000023-1491911889:738277..738548Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1491911889:737659..737755TCONS_00002888-exon-sc0000023-1491911889:737659..737755Clytia hemisphaericaexon
TCONS_00002888-exon-sc0000023-1491911889:736979..737388TCONS_00002888-exon-sc0000023-1491911889:736979..737388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:736979..742466 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.843853	0	0	0.664992	19.9313	9.97265	11.9025	8.46946	0.0759949	6.58155e-05	0.000162016	2.0054	8.46923e-10	0.0886981	2.26497	2.83374	0.0397707	2.10969	3.16595	0	0.0354783	1.45362	8.59814e-05	4.83993e-05	5.22434	12.6359	0.00707191	4.80246e-10	3.2151	1.43937
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
IPR002939DnaJ_C
IPR018253DnaJ_domain_CS
IPR008971HSP40/DnaJ_pept-bd
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
molecular_function GO:0051082 unfolded protein binding
Blast
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BLAST of TCONS_00002888 vs. Swiss-Prot (Human)
Match: DJB11 (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 419.853 bits (1078), Expect = 2.262e-143
Identity = 205/337 (60.83%), Postives = 255/337 (75.67%), Query Frame = 3 
Query:    6 RDFYKILGVRKDATDRDIKKAYRKLAMKWHPDKNPDDPKAQDKFQDLGAAYEVLSDADKRKTYDKHGEEGVQKMXXXXXXXXXXXXXXXXXXXXXXXXXXNKQRGHGEIPKGGNIVMDLEVTLEELYTGDFVEVLRAKPFAETTSGTRRCNCRMEMRTHQLGPGRFQMMQEEVCDECPNKRFIIKDQLLEIEIEQGMQDGQEYPFVSEGEPHIDGEPGDLIFKIKELKHKTFERRGDDLFTNITISLVDALNGFDMEFKHLDGHVVKVHREKITWPGAKIKKKGEGMPNYHNNLDKGVLVITFDVDFPKGELAEEQKEAIKTILNQDSKQKIYNGLQ 1016
            RDFYKILGV + A+ +DIKKAYRKLA++ HPD+NPDDP+AQ+KFQDLGAAYEVLSD++KRK YD +GEEG++                  GF   G      +     IP+G +I++DLEVTLEE+Y G+FVEV+R KP A    G R+CNCR EMRT QLGPGRFQM QE VCDECPN + + +++ LE+EIE G++DG EYPF+ EGEPH+DGEPGDL F+IK +KH  FERRGDDL+TN+TISLV++L GF+M+  HLDGH V + R+KIT PGAK+ KKGEG+PN+ NN  KG L+ITFDVDFPK +L EE +E IK +L Q S QK+YNGLQ
Sbjct:   24 RDFYKILGVPRSASIKDIKKAYRKLALQLHPDRNPDDPQAQEKFQDLGAAYEVLSDSEKRKQYDTYGEEGLKDGHQSSHGDIFSHFFGDFGFMFGGTPRQQDR----NIPRGSDIIVDLEVTLEEVYAGNFVEVVRNKPVARQAPGKRKCNCRQEMRTTQLGPGRFQMTQEVVCDECPNVKLVNEERTLEVEIEPGVRDGMEYPFIGEGEPHVDGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRDKITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAREGIKQLLKQGSVQKVYNGLQ 356
The following BLAST results are available for this feature:
BLAST of TCONS_00002888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DJB112.262e-14360.83DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]
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