TCONS_00002816 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002816
Unique NameTCONS_00002816
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002816 ID=TCONS_00002816|Name=TCONS_00002816|organism=Clytia hemisphaerica|type=transcript|length=2464bp
cgttgcgtcacagcgaaaggtttgtttttattttagtttgtatctttgaa
agaccccatcggctttaggctgggctgtcggctttaggacctctcacggt
aatGATCGATAACAACCGAAGGTGATCAGTGACCACttaaggcggcaatc
aaaaatatgttgcgTTCGGGTCGGCCAACCGActgttttttacaagaaaa
cctGATTCGGAAAGTCGGTAAAATCGTCGGGTTTTTTTGGACGCTGTTCG
CAGGTTGGGATCTTTCCTATAATGGCACGGGCGAACGGAGCATGTCTTTA
AATCATTAGTTTTTGTTTCCTtataacccacattgagtcccgttcaagat
tttcatgtacccttattgaaattttacagTAATGTCAAAATTCAGCAACG
TGGTAGGGCCAATACCGAAAGTAAGGGTCGCTTTAAGGTTAACACATGCG
CATGcacatttagtttggcaaattaaagatggtgggcggcataagattct
gttgattgccgacttgattcatcggaatttactagatcttaaaaatccga
caaaatttactaccgaccgaccgaccgatcgaccgactggatttgaagat
gttttaggatccgaatgaaacatattttttattgccGCCTTATCGATTCT
ATTGGTGATCGATTACTCACTCAACTCCAAATCATGAAATTTCTTTCGAC
CATTTTCGAATTGTTCGATCGTTTCAATTACTGTTCGATTACTTTCAATC
ActttcgatcatattgaataccttcaaTTGTGTCGGATATGTTTCCTGTA
GCAAAGCAACAGAATCTTGAACCAAGTTTATCTCGTCCAATAAAATACGA
GACTGAGTTTATTTCGTCCAATAAAACATGCAATTTACGCGCGAAAACCA
CTTGGTTAAtttgaggaaacccagggcgaGCACACTTAAAATGGCAGGGA
AGTACTGAAGGTGATTCTTATGGCTTCTTTTTGTGGTTTGGTTTTAGGTC
AATGTTTTCGGTTTTTCCAAGGTATATCTATGTAATCAACTGGTTATCAA
AGAAAACATGGTTATCAAAGTTATcaaaagtaatcaataacaatcaaagt
actcgaacggttatcaagttttcaaagggttgttaagaaagtgatcaAAG
ActcagaatttttttgaaatttgggtACCCGaaattcgattgttaatcga
taaaTGGTCATTCGATTACTTCAATTATTATCGACGATTACTTCGATAAT
TGAATTTATCGATTAGTATCGTCTGGAATAGCCTTTGATGGGGCATTTGA
TACTATCAACtgttctaacttgggacgattggttgaaacatgggactggt
tgacaGCAAATTTGTTtagataactccaccaagtttatcaatcatacttc
ttcgttcctctttGAGTGCACAGTACACTCGCGTACTACagatctttttc
aaatttcaatttaaaagcctactcggtgcgaaagagaaatcgtgtatttt
ttaatacgccgttcattaattcaaatcaaatgactttggatgttcggtga
aatggtggctgaattgctgtcccatgttttgtcacaTAGTCCCatgttag
agcagttgacggtatattcAATGATTAATCGATGCTGTCAAAGTacaaaa
gaacccggtttctaGACTAAGAATCTTGGTGCTTTCCCGGAATCATTACC
ACTTTTTTTTCCGGGTATACTGCAAAGGTGACTTCAATATTgtagaatgg
aaaaataaagagaTAAATACCccgtaaatgaaaaaaatgaggaaaaaatc
atttgtaaagaattttttcaaaaataatggaTTACTGGTACAAAGTGACa
gtaactaactttttttcaaaaaaaggaccaccacttagtaccctGGTACA
TCCAATTtgtagTCGTCATGCAGCAGATGCCTTCAGGGTCAACGTTATAC
ATGCAAGAGGACAGATTCGATCACCTGTAACACACATAGCTGGCACAAGC
TTTTTTCACGTCAAAAGAGGGAATGTATGGATTGCTGCAGTCTCAAAACA
GAACTGCAATGCTGCACTTGTATtcgaatttttattcaaaactgTAGAAG
TTATGGCCAATTATTTTGGAAAAGTCTCggaagaaaatgttaaaaataat
tttgtattgATTTATGAACTTTTAGATGAAATTAACGATTTTGGGTACCC
TCAAAAGACAGATGTAGGAATTTTAAAGACTTTTATAACACAACAAGGAA
TTCGCTCACAGACGAGAGAAGAACAAGCACAAATCACAAGTCAAGTTACA
GGACAAATTGGTTGGAGGAGAGAAGGAATTAAATATAGACGGAATGAATT
ATTTCTCGATGTTTTGGAATCAGCGAATTTACTGATGTCTCCTCAAGGTA
AGTACTCGACTCAAACTTTATTTTGGATTATAGTCAGACTAGTTAACTTT
TAGATATTCAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00002816-protein

>TCONS_00002816-protein ID=TCONS_00002816-protein|Name=TCONS_00002816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MDYWYKVTVTNFFSKKGPPLSTLVHPICSRHAADAFRVNVIHARGQIRSP
VTHIAGTSFFHVKRGNVWIAAVSKQNCNAALVFEFLFKTVEVMANYFGKV
SEENVKNNFVLIYELLDEINDFGYPQKTDVGILKTFITQQGIRSQTREEQ
AQITSQVTGQIGWRREGIKYRRNELFLDVLESANLLMSPQGKYSTQTLFW
IIVRLVNF
Run BLAST on NCBI

transcript from alignment at sc0000023:662190..670084+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002816 ID=TCONS_00002816|Name=TCONS_00002816|organism=Clytia hemisphaerica|type=transcript|length=7895bp|location=Sequence derived from alignment at sc0000023:662190..670084+ (Clytia hemisphaerica)
cgttgcgtcacagcgaaaggtttgtttttattttagtttgtatctttgaa
agaccccatcggctttaggctgggctgtcggctttaggacctctcacggt
aatGATCGATAACAACCGAAGGTGATCAGTGACCACttaaggcggcaatc
aaaaatatgttgcgTTCGGGTCGGCCAACCGActgttttttacaagaaaa
cctGATTCGGAAAGTCGGTAAAATCGTCGGGTTTTTTTGGACGCTGTTCG
CAGGTTGGGATCTTTCCTATAATGGCACGGGCGAACGGAGCATGTCTTTA
AATCATTAGTTTTTGTTTCCTtataacccacattgagtcccgttcaagat
tttcatgtacccttattgaaattttacagTAATGTCAAAATTCAGCAACG
TGGTAGGGCCAATACCGAAAGTAAGGGTCGCTTTAAGGTTAACACATGCG
CATGcacatttagtttggcaaattaaagatggtgggcggcataagattct
gttgattgccgacttgattcatcggaatttactagatcttaaaaatccga
caaaatttactaccgaccgaccgaccgatcgaccgactggatttgaagat
gttttaggatccgaatgaaacatattttttattgccGCCTTATCGATTCT
ATTGGTGATCGATTACTCACTCAACTCCAAATCATGAAATTTCTTTCGAC
CATTTTCGAATTGTTCGATCGTTTCAATTACTGTTCGATTACTTTCAATC
ActttcgatcatattgaataccttcaaTTGTGTCGGATATGTTTCCTGTA
GCAAAGCAACAGAATCTTGAACCAAGTTTATCTCGTCCAATAAAATACGA
GACTGAGTTTATTTCGTCCAATAAAACATGCAATTTACGCGCGAAAACCA
CTTGGTTAAtttgaggaaacccagggcgaGCACACTTAAAATGGCAGGGA
AGTACTGAAGGTGATTCTTATGGCTTCTTTTTGTGGTTTGGTTTTAGGTC
AATGTTTTCGGTTTTTCCAAGGTATATCTATGTAATCAACTGGTTATCAA
AGAAAACATGGTTATCAAAGTTATcaaaagtaatcaataacaatcaaagt
actcgaacggttatcaagttttcaaagggttgttaagaaagtgatcaAAG
ActcagaatttttttgaaatttgggtACCCGaaattcgattgttaatcga
taaaTGGTCATTCGATTACTTCAATTATTATCGACGATTACTTCGATAAT
TGAATTTATCGATTAGTATCGTCTGGAATAGCCTTTGATGGGGCATTTGA
TACTATCAACtgttctaacttgggacgattggttgaaacatgggactggt
tgacaGCAAATTTGTTtagataactccaccaagtttatcaatcatacttc
ttcgttcctctttGAGTGCACAGTACACTCGCGTACTACagatctttttc
aaatttcaatttaaaagcctactcggtgcgaaagagaaatcgtgtatttt
ttaatacgccgttcattaattcaaatcaaatgactttggatgttcggtga
aatggtggctgaattgctgtcccatgttttgtcacaTAGTCCCatgttag
agcagttgacggtatattcAATGATTAATCGATGCTGTCAAAGTacaaaa
gaacccggtttctaGACTAAGAATCTTGGTGCTTTCCCGGAATCATTACC
ACTTTTTTTTCCGGGTATACTGCAAAGGTGACTTCAATATTgtagaatgg
aaaaataaagagaTAAATACCccgtaaatgaaaaaaatgaggaaaaaatc
atttgtaaagaattttttcaaaaataatggaTTACTGGTACAAAGTGACa
gtaactaactttttttcaaaaaaaggaccaccacttagtaccctGGTACA
TCCAATTtgtaggtataaacttatttttgTAACCGTTCTGCTCGCTATAA
TATAGCGAACCTAATGGTTCGCTATATGAACCTGGTTGAACCTAATTggt
aaaaaaaactgaaatatttGTAATAATTATCGGAGCCGCGAACTCATTCA
AAACAATTATACGCAATTATCTCATTTAGCCGCGGCTTTTTTATCTTAGA
AAGAGTAACCACGGTAAAACATAtctgaataaaaaaaacaatcaaatcaa
atcctTGATCCAATAAGACCAAAATTGACCTTTCTCCAAGCTATTAACAA
TTGCCTGTGTGTTATTTAAACTTTAAAGCTTTTGCAATCCTTGTAGtgtt
gttttcattcaaatttgcTCGTAATGTTCTTTAACAACTCATTAAATATC
CATTAAAATGCTCCATATGTAAATCATTAGGTATGTTTCGACTGATGAGT
CTCATGGGTATTGTTGATGAAACGGCCCCATATCGAAATGCATCCTTTTT
ATCACTTAATTTGGTAGAAAAGCATGTTCAATTCATGAGAGTAGTTGGTA
TGACGAGTTGCTTTGAAATAAAGAAGTGCATATgctattcttaatatttt
gcaaAATCATGTTGATTGAAAACAAAGTCCCCTTTCAAGCTCTCTTTTTT
GATCCTTGCAAACTTTTTCAGTTCGTGATTGAgagagtgatatatttttt
tacttctGTTTAGTTGATATAAAAGGTCTGCCAAACACATCACCGGAGAG
CCTTTAAATTGTGAGCTTccctttaaactttaaaaaggATAGAAAGAGAA
CGAAGAGTGTATTCTCCTCTCGCTGAGCTAATGGTTTGTTTGCTCTTTCC
ATTGTTGGTCAATTACCTTACAAATGGTTTATGTAAATCTAATAGCGAGA
GATTGATCTCTTTCGTGTTCTCCCGTTCTCtttctcttcaaaaacatgta
aaaaaacTAGCAAATTGACACTCAAACTGCTACTCTGGATTCTAAGAGAT
TCAACTTCCTGTAAAatgcaaagaaaagaaaaacatgacaGTAAAGATTT
TTGCTAAAGTAGCGATATAAACTTTCAGATTAAAAACATTTCTGTAGAGC
TGTATTTTTAGGAAGAAAACAGCtctaaaacgcttgaaattgagcttttt
ttattGCAGTTTTTTGTTgaaccgccatctttgtttatgcAAAGATGCCA
TTTTTAAAGGGACCTTTTACGAATCCTGGATTAATACGGTTAATAAACAA
TGTTCTAAATgttttcgccaacaaaaatcataaaaaagaaataagtttat
acctaagcTAACCAGAGCTAACCAATTTCATCAAGCAAAACCTTAAAAGG
TTTGTAATTTTGGAGCTCATTaaccaaatttgatgttttatacGAATCCC
TGTCAGGATTTGATGTCATCAGGTGATTAATTCTGTCTAATTCTGCTATA
GCGACTATCTGGTATGCAAAGTAGTtggagtgatttttttaaacagcttt
ttcagaaggttttatttataaacatttaaaaagacCAGTTCGTTGCTATG
GCAAAATTAGGCAAGGTATGTAGACACTACACAAAGTTACCGTACTAAAA
TTTGGCAGGATTCTTTTAgaactgtttttctaataaaaactTTCTCTCAG
GCCAGTTTTCAGATGTTGGAAAAAGGAAAGGTTTTGCCTGGGATGGAGAG
TAAACAGCAGGAGGGCTGACCTAAAATGGGTCCAGGGCAAGAAACTCCAG
AATCCCTAGAAATTGTTATTCAATAGAGTTTAAGTTATCATTTTTGTAGG
TATGGCCTCGCTTCACTGAACAGGTGGTAAATTAGGCTGAAAACAAATCA
ACTTTAGCTACCGTATACTGAAATTACTGACATTTAAAGACAAAGAGATG
GAAGGTGCTGACGCTTCTCACCAATCCTAAATGCTgcccttgaaactttt
tggacctacctccgggtaccccggtggaggtcctataaattaacccatgt
ccgtccgttcgtccgtctgttaccagcttttctcaggatttgctcattag
tttttttattatttttggcacaatgatgcaaaatggcaatgcctaaaatg
tgacggagcccgattttcgaaaaaaaatatatttgggtaaatttgggcca
aaaactacctaaaaatagggttttttggactttgtgcaaaatcctgtcat
tacttttttctaattttttgttcaaagatggagggcaagattctctaaag
aatggctgaagtgtttttcccggaaaattcttattcgccttaaaaaacgg
attttcgtatttttgggaaattccctttagacaaataagaaaatatagct
tttctcaatgttgactcgttatttctttctgattttttgcacaatgatgc
aaaatggcaatgcctaaaatgtgacgaagctTGATTTTCgaacaacattt
ttttccggccgaaaatgctggacaacgccgtttttctggattttcattgg
atttttttcttataattggttgttttttcattcaaaaacatttttaatag
cCATGCctaccatcaagcatgtttcaattttcaaaaacttgatctttgaa
gccggaactattgaAAAATCgtcggaacaacctattttcgccagaaagac
agtatttcttgaatttctcgggctgtacttaatatttttttatgaaattt
tgcgcaCGGATGAAAgactttctatttctattttccctactcccttccct
cttcccccatcaacaatcaatgataaaatttaatgtgttatgcattttcg
caaaACGCTATAAATcatctgactgattgttttcatttttctccttattg
ccttattatctagctttcatcatcaggtaggtctttcagcatgttgcttg
ttgaattttaaatttatgCCCTTGCCTGAGGGCACTAACACAACCTTTCC
TGCTCTTGCATTTGAGAAAAGTGAAGGGACCTGAAAACCCTAAGAAAACT
CATGCAAAGAACAGTTTTGTTCAACCCCTAAAAGCCAAACAATTGAGAGC
AATAAAAAATGCTTGTACAACTTTTTATCATATTGCGTGAAAGGTGTACT
ATTAGACCtatttgaataattaaaaactatgATGATTAAAAATTTTATGA
TGCTGTGGCTGTTGTCAGTGTTAATGACACTCAAGGTAGGATATTATAAT
TACATTCTATTAACTTCATGCTGGTATTACTcccaaacttttttaattta
ccTCTTTTTCAGTCGTCATGCAGCAGATGCCTTCAGGGTCAACGTTATAC
ATGCAAGAGGACAGATTCGATCACCTGTAACACACATAGCTGGCACAAGC
TTTTTTCACGTCAAAAGAGGGAATGTATGGATTGCTGCAGTCTCAAAACA
GAACTGCAATGCTGCACTTGTATtcgaatttttattcaaaactgTAGAAG
TTATGGCCAATTATTTTGGAAAAGTCTCggaagaaaatgttaaaaataat
tttgtattgATTTATGAACTTTTAGATGGTAAGTTTGTTTTAATTCTATC
TGGAGAGCAAGCTAGTCACCAGAAAAGTAAAGAATAAATGTGATTGCTCA
AGCAAATTTAAGTTCATGAAAAGTCGAAATACCTCCTTTTTATTTTACCG
GTCTGGCACCAACTTTCTTGAACAGTATTGAAGGCTAATAAATGGAAGAA
AGCAGACCTTCTAGCTCTATAAATAGTGCTAGCcacttttaatttgtttt
tggtTGACAGCATCATTCATAGCATCACTTTCAATCACGCAGCCAAGTTG
TTAATAAATATTAGCTCCAAATTGTTATCGAAATCACAAGATCAATTTAC
TGGTTCAACAATCTTCCTCTAGCCAATTGCAAAAGATACTTTCAAAAGTT
ACCCTCTCTATATTTTACCACTTTTCAGTCGATCTGTCTGATACGATCTT
TCAGGTACTTAGAATTGTTCGGGGAGTCACAAATAAGACCTTATTTTAAC
AGCTAACCCTTTTCCTCAGCTCATTACCTGTGGATGTGTTCTTTGTCAGA
TAAAGCTGCAAGTTTCCAGTCCAAACTATAGCTAAAGACTCAATGATCTA
AACAGATATTTGCATTCATGAGATACTTAACAGATTGAATTACACAAATT
AGAATTAGGTTCTTCCTGCTACCAAACATTCTTCTGAGCTCATAGTCAGG
CAAATTGTACTTATTTTCAATCATTTATTGACTTATGATTCTGTACTTTG
gtcttttattttcataatacataatataatatacacagaattttgtttct
ttttacaGAAATTAACGATTTTGGGTACCCTCAAAAGACAGATGTAGGAA
TTTTAAAGACTTTTATAACACAACAAGGAATTCGCTCACAGGTATGACGA
TGTCTACTATGTAAAATCAATATTCTCTGAAGGGCCTAACCAGTAATTTT
AAAGGGACATCTAATTACTTGTgaaatttataaaatcaaaCAATGTCATT
GTGAACGGTTTCAAAACATTCTGTAGACGTTGAAAGACACGTGGTTGTTC
GtgtaatgtttacattttacttatGCCTCTTTAATTTTGAACACCAATAA
TTAATTGATACCAACCCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAACGATTTTGGGTACCCTCAAAAGACAGATGTAGGAATTTT
AAAGACTTTTATAACACAACAAGGAATTCGCTCACAGGTATGACGATGTC
TACTATGTAAAATCAATATTCTCTGAAGGGCCTAACCAGTAATTTTAAAG
GGACATCTAATTACTTGTGAAATTTATAAAATCACTGCAAGCAAGGGGCT
GTGAAATCAAACAATGTCATTTGTGAACAGTTTCAAAACATTCTGTAGAC
GTTGAAAGACACGTGGTTGTTCGtgtaatgtttacattttacttatGCCT
CTTTAATTTTGAACACCAATAATTAATTGATACCAACCCTTTTTTATGAA
TTATTCTGTGACAATTTATTTGAACTTTGAATTGATTTTCAGACGAGAGA
AGAACAAGCACAAATCACAAGTCAAGTTACAGGACAAATTGGTTGGAGGA
GAGAAGGAATTAAATATAGACGGAATGAATTATTTCTCGATGTTTTGGAA
TCAGCGAATTTACTGATGTCTCCTCAAGGTAAGTACTCGACTCAAACTTT
ATTTTGGATTATAGTCAGACTAGTTAACTTTTAGATATTCAAAAG

Coding sequence (CDS) from alignment at sc0000023:662190..670084+

>TCONS_00002816 ID=TCONS_00002816|Name=TCONS_00002816|organism=Clytia hemisphaerica|type=CDS|length=2508bp|location=Sequence derived from alignment at sc0000023:662190..670084+ (Clytia hemisphaerica)
atggaTTACTGGTACAAAGTGACagtaactaactttttttcaaaaaaagg
accaccacttagtaccctGGTACATCCAATTtgtagTCGTCATGCAGCAG
ATGCCTTCAGGGTCAACGTTATACATGCAAGAGGACAGATTCGATCACCT
GTAACACACATAGCTGGCACAAGCTTTTTTCACGTCAAAAGAGGGAATGT
ATGGATTGCTGCAGTCTCAAAACAGAACTGCAATGCTGCACTTGTATtcg
aatttttattcaaaactgTAGAAGTTATGGCCAATTATTTTGGAAAAGTC
TCggaagaaaatgttaaaaataattttgtattgATTTATGAACTTTTAGA
TGAAATTAACGATTTTGGGTACCCTCAAAAGACAGATGTAGGAATTTTAA
AGACTTTTATAACACAACAAGGAATTCGCTCACAGACGAGAGAAGAACAA
GCACAAATCACAAGTCAAGTTACAGGACAAATTGGTTGGAGGAGAGAAGG
AATTAAATATAGACGGAATGAATTATTTCTCGATGTTTTGGAATCAGCGA
ATTTACTGATGTCTCCTCAAGGTAAGTACTCGACTCAAACTTTATTTTGG
ATTATAGTCAGACTAGTTAACTTTTAGatggaTTACTGGTACAAAGTGAC
agtaactaactttttttcaaaaaaaggaccaccacttagtaccctGGTAC
ATCCAATTtgtagTCGTCATGCAGCAGATGCCTTCAGGGTCAACGTTATA
CATGCAAGAGGACAGATTCGATCACCTGTAACACACATAGCTGGCACAAG
CTTTTTTCACGTCAAAAGAGGGAATGTATGGATTGCTGCAGTCTCAAAAC
AGAACTGCAATGCTGCACTTGTATtcgaatttttattcaaaactgTAGAA
GTTATGGCCAATTATTTTGGAAAAGTCTCggaagaaaatgttaaaaataa
ttttgtattgATTTATGAACTTTTAGATGAAATTAACGATTTTGGGTACC
CTCAAAAGACAGATGTAGGAATTTTAAAGACTTTTATAACACAACAAGGA
ATTCGCTCACAGACGAGAGAAGAACAAGCACAAATCACAAGTCAAGTTAC
AGGACAAATTGGTTGGAGGAGAGAAGGAATTAAATATAGACGGAATGAAT
TATTTCTCGATGTTTTGGAATCAGCGAATTTACTGATGTCTCCTCAAGGT
AAGTACTCGACTCAAACTTTATTTTGGATTATAGTCAGACTAGTTAACTT
TTAGatggaTTACTGGTACAAAGTGACagtaactaactttttttcaaaaa
aaggaccaccacttagtaccctGGTACATCCAATTtgtagTCGTCATGCA
GCAGATGCCTTCAGGGTCAACGTTATACATGCAAGAGGACAGATTCGATC
ACCTGTAACACACATAGCTGGCACAAGCTTTTTTCACGTCAAAAGAGGGA
ATGTATGGATTGCTGCAGTCTCAAAACAGAACTGCAATGCTGCACTTGTA
TtcgaatttttattcaaaactgTAGAAGTTATGGCCAATTATTTTGGAAA
AGTCTCggaagaaaatgttaaaaataattttgtattgATTTATGAACTTT
TAGATGAAATTAACGATTTTGGGTACCCTCAAAAGACAGATGTAGGAATT
TTAAAGACTTTTATAACACAACAAGGAATTCGCTCACAGACGAGAGAAGA
ACAAGCACAAATCACAAGTCAAGTTACAGGACAAATTGGTTGGAGGAGAG
AAGGAATTAAATATAGACGGAATGAATTATTTCTCGATGTTTTGGAATCA
GCGAATTTACTGATGTCTCCTCAAGGTAAGTACTCGACTCAAACTTTATT
TTGGATTATAGTCAGACTAGTTAACTTTTAGatggaTTACTGGTACAAAG
TGACagtaactaactttttttcaaaaaaaggaccaccacttagtaccctG
GTACATCCAATTtgtagTCGTCATGCAGCAGATGCCTTCAGGGTCAACGT
TATACATGCAAGAGGACAGATTCGATCACCTGTAACACACATAGCTGGCA
CAAGCTTTTTTCACGTCAAAAGAGGGAATGTATGGATTGCTGCAGTCTCA
AAACAGAACTGCAATGCTGCACTTGTATtcgaatttttattcaaaactgT
AGAAGTTATGGCCAATTATTTTGGAAAAGTCTCggaagaaaatgttaaaa
ataattttgtattgATTTATGAACTTTTAGATGAAATTAACGATTTTGGG
TACCCTCAAAAGACAGATGTAGGAATTTTAAAGACTTTTATAACACAACA
AGGAATTCGCTCACAGACGAGAGAAGAACAAGCACAAATCACAAGTCAAG
TTACAGGACAAATTGGTTGGAGGAGAGAAGGAATTAAATATAGACGGAAT
GAATTATTTCTCGATGTTTTGGAATCAGCGAATTTACTGATGTCTCCTCA
AGGTAAGTACTCGACTCAAACTTTATTTTGGATTATAGTCAGACTAGTTA
ACTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001535XLOC_001535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002816-exon-sc0000023-1491911889:662190..664101TCONS_00002816-exon-sc0000023-1491911889:662190..664101Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1510915933:662190..664101TCONS_00002816-exon-sc0000023-1510915933:662190..664101Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1575043694:662190..664101TCONS_00002816-exon-sc0000023-1575043694:662190..664101Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1491911889:667352..667617TCONS_00002816-exon-sc0000023-1491911889:667352..667617Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1510915933:667352..667617TCONS_00002816-exon-sc0000023-1510915933:667352..667617Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1575043694:667352..667617TCONS_00002816-exon-sc0000023-1575043694:667352..667617Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1491911889:668398..668480TCONS_00002816-exon-sc0000023-1491911889:668398..668480Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1510915933:668398..668480TCONS_00002816-exon-sc0000023-1510915933:668398..668480Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1575043694:668398..668480TCONS_00002816-exon-sc0000023-1575043694:668398..668480Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1491911889:669882..670084TCONS_00002816-exon-sc0000023-1491911889:669882..670084Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1510915933:669882..670084TCONS_00002816-exon-sc0000023-1510915933:669882..670084Clytia hemisphaericaexon
TCONS_00002816-exon-sc0000023-1575043694:669882..670084TCONS_00002816-exon-sc0000023-1575043694:669882..670084Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002816-proteinTCONS_00002816-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:662190..670084 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.0953	51.5543	53.582	50.101	69.3288	51.3567	65.9029	72.1504	33.8431	36.9572	29.098	25.1346	28.1759	28.6166	25.3759	27.8704	34.234	31.9113	18.7755	18.5924	29.0881	31.3189	26.4638	27.7364	29.5838	31.458	32.5382	27.0316	31.9691	29.3398
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018240Clathrin_mu_CS
IPR011012Longin-like_dom
IPR028565MHD
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030131 clathrin adaptor complex
Blast
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BLAST of TCONS_00002816 vs. Swiss-Prot (Human)
Match: AP2M1 (AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 4.517e-85
Identity = 133/165 (80.61%), Postives = 150/165 (90.91%), Query Frame = 3 
Query: 1914 RHAADAFRVNVIHARGQIRSPVTHIAGTSFFHVKRGNVWIAAVSKQNCNAALVFEFLFKTVEVMANYFGKVSEENVKNNFVLIYELLDEINDFGYPQKTDVGILKTFITQQGIRS--QTREEQAQITSQVTGQIGWRREGIKYRRNELFLDVLESANLLMSPQGK 2402
            R+A DAFRVNVIHAR Q+RSPVT+IA TSFFHVKR N+W+AAV+KQN NAA+VFEFL+K  +VMA YFGK+SEEN+KNNFVLIYELLDEI DFGYPQ ++ G LKTFITQQGI+S  QT+EEQ+QITSQVTGQIGWRREGIKYRRNELFLDVLES NLLMSPQG+
Sbjct:   26 RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQ 190
The following BLAST results are available for this feature:
BLAST of TCONS_00002816 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP2M14.517e-8580.61AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 P... [more]
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