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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002815 ID=TCONS_00002815|Name=TCONS_00002815|organism=Clytia hemisphaerica|type=transcript|length=4061bpRun BLAST on NCBI transcript from alignment at sc0000023:645163..658554+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002815 ID=TCONS_00002815|Name=TCONS_00002815|organism=Clytia hemisphaerica|type=transcript|length=13392bp|location=Sequence derived from alignment at sc0000023:645163..658554+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002815 vs. Swiss-Prot (Human)
Match: LAMA5 (Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8) HSP 1 Score: 331.643 bits (849), Expect = 2.915e-92 Identity = 246/933 (26.37%), Postives = 397/933 (42.55%), Query Frame = 2
Query: 92 CNCDKRGSVSQECNRIGGHCKCKANVIGKNCNKCKTGYYGFPNCKACNCFIAGSKTADCNRYGQCACKPQYTGRTCNRCRSGNWGFPDCRSCSCDRRGSFTLTCRSTDGQCPCLRNYAGRACGQCQIGFFDFPYCRSCNCHSAGIVVTKETPTGCYRKNPDRCDCKQNVEGSTCNRCKVNYYNMQLDNPLGCTACNCSTFGSIRGAGTCHRENGQCICQPNVIGRRCDTCKDGFYVVKKDKVFSCQPCLCSSGGSLHGVCDKITGQCKCKPKVGGLKCDKEEEGGYYLPSIGQYIFSADDIVPHAPHEF-FG---------DFDGALVNGSFASRRVS-FNVTEKEQTFYIMVY-----YSLTSHISPRIDLEFSKDEKILPVTNYLKAKEFQQPTLDIIRDNNSYLMTNLTQGLWHLQLILYKSFILNQITMVPIEQISKQKVSKSINNPCTISDGRRY----CSMYTYFEL------SNVGAVLIQG---------EELSNDGADLFDLEKYRGANIDGAVKLSMNKGLAYSLYDARPEPFYVVIQYLNTDLNSSMVELSILNRGITQKGTVELFPCIYAFGCRQVILVERTDSKLLFTGNDKARTITLKSLNKYQAYIDFVALIPKSKWNPNIISPAFYC-------NRRLSRCIDGEFPST--------------------TNTQQI-EAKKALGVRASAP----PDGHPTSLAVLMTPRRQRNLRWIKPLKT-GSYYMIIHYYQPLYDKFPSKVIVMTYQRAVAGKVFFHYCPSVHGCRSVV----KYLLDDDNQRFPVSGNIMRVSFTLPRYSKLWVERIVLVPVNEYHENILELSPLDITKRYLRKCIGRQSNQIEKSNREFCRSATFELTLGLNKYPTPCICNARGSHPYVNCNPQNGQCSCKQGFRGKDCSKCVQGF--FPHCR 2668
C C G++ + C+ G C C+ G +C++C+ GY+GFPNC+AC C G+ C G C C+P YTG C C G GFP C C C GS C GQC C G C C G ++FPYC + +CH AG+ P + P C C+ +VEG +C+RCK ++ + NP GCT C+C G++ G C GQC C+P+V G+ C +CKDGF+ + + F C+ C C GG+L C+ TG C+C+P G C E +YLP + ++ H FG + G R V+ N+T + + + Y S++ +S R + + + + +P + L G W L+ + + +L+ + ++P + + CT + C +YT+ L + + A+ Q E+LS L G+++D +++++ + Y+L V++Y N D + + Q+G + L PC+Y+ CR T L D ++ L + + + ++ V L+P +++P + P C + C+ FP T+ Q + A G R P PD PT +L P Q + + + T G Y ++H YQP + FP +V++ R G +CP +GCR++V + LLD V+ + + V+ +P+ LW++ +++VP N Y L PLD + ++ C + + S+ FCR+A L+L N PC C+ G+ C P GQC C G+DCS+C G+ FP+CR
Sbjct: 587 CGCSPAGTLPEGCDE-AGRCLCQPEFAGPHCDRCRPGYHGFPNCQACTCDPRGALDQLCGAGGLCRCRPGYTGTACQECSPGFHGFPSCVPCHCSAEGSLHAACDPRSGQCSCRPRVTGLRCDTCVPGAYNFPYCEAGSCHPAGLAPVD--PALPEAQVP--CMCRAHVEGPSCDRCKPGFWGLSPSNPEGCTRCSCDLRGTLGGVAECQPGTGQCFCKPHVCGQACASCKDGFFGLDQADYFGCRSCRCDIGGALGQSCEPRTGVCRCRPNTQGPTC-SEPARDHYLPDLHHLRLELEEAATPEGHAVRFGFNPLEFENFSWRGYAQMAPVQPRIVARLNLTSPDLFWLVFRYVNRGAMSVSGRVSVREEGRSATCANCTAQSQPVAFPPSTEPAFITVPQRGFGEPFVLNPGTWALR-VEAEGVLLDYVVLLPSAYYEAALLQLRVTEACTYRPSAQQSGDNCLLYTHLPLDGFPSAAGLEALCRQDNSLPRPCPTEQLSPSHPPLITCT---GSDVDVQLQVAVPQPGRYAL----------VVEYANEDARQEVGVAVHTPQRAPQQGLLSLHPCLYSTLCRGT--ARDTQDHLAVFHLDSEASVRLTA-EQARFFLHGVTLVPIEEFSPEFVEPRVSCISSHGAFGPNSAACLPSRFPKPPQPIILRDCQVIPLPPGLPLTHAQDLTPAMSPAGPRPRPPTAVDPDAEPT---LLREP--QATVVFTTHVPTLGRYAFLLHGYQPAHPTFPVEVLI-NAGRVWQGHANASFCPHGYGCRTLVVCEGQALLD-------VTHSELTVTVRVPKGRWLWLDYVLVVPENVYSFGYLREEPLDKSYDFISHCAAQGYHISPSSSSLFCRNAAASLSLFYNNGARPCGCHEVGAT-GPTCEPFGGQCPCHAHVIGRDCSRCATGYWGFPNCR 1482 HSP 2 Score: 168.318 bits (425), Expect = 1.170e-41 Identity = 107/315 (33.97%), Postives = 139/315 (44.13%), Query Frame = 2
Query: 92 CNCDKRGSVSQECNRIGGHCKCKANVIGKNCNKCKTGYYGFPNCKA--------------------CNCFIAGSKTADCN---RYGQCACKPQYTGRTCNRCRSGNWGFPDCRSCSCDRRGSFTLTCRSTDGQCPCLRNYAGRACGQCQIGFFDFPYCRSCNCHSAGIVVTKETPTGCYRKNPDRCDCKQNVEGSTCNRCKVNYYNMQLDNPLGCTACNCSTFGSIR---GAGTCHRENGQCICQPNVIGRRCDTCKDGFYVVKKDKVFSCQPCLCSSGGSLHGVCDKITGQCKCKPKVGGLKCDKEEEGGYYLP 958
CNC+ C + G C C+ N G+ C+ C G+ GFP+C C+C AG++ C R G+C CKP + G C C G +G P C+ C C G C GQC C + G C +C G+F FP C+ C C AG + P GC RC C+ G C+RC+ Y+ C AC C G++ GAG G C C+P G C C GF+ SC PC CS+ GSLH CD +GQC C+P+V GL+CD G Y P
Sbjct: 429 CNCES-DFTDGTCEDLTGRCYCRPNFSGERCDVCAEGFTGFPSCYPTPSSSNDTREQVLPAGQIVNCDCSAAGTQGNACRKDPRVGRCLCKPNFQGTHCELCAPGFYG-PGCQPCQCSSPGVADDRCDPDTGQCRCRVGFEGATCDRCAPGYFHFPLCQLCGCSPAGTL-----PEGCDEAG--RCLCQPEFAGPHCDRCRPGYHGFP-----NCQACTCDPRGALDQLCGAG------GLCRCRPGYTGTACQECSPGFHGFP-----SCVPCHCSAEGSLHAACDPRSGQCSCRPRVTGLRCDTCVPGAYNFP 718 HSP 3 Score: 149.443 bits (376), Expect = 7.450e-36 Identity = 84/227 (37.00%), Postives = 117/227 (51.54%), Query Frame = 2
Query: 35 FCSNALVTLTSEFTSQTFTCNCDKRGSVSQECNRIGGHCKCKANVIGKNCNKCKTGYYGFPNCKACNCFIAGSKTADCNRYGQCACKPQYTGRTCNRCRSGNWG---FPDCRSCSCDRRGSFTL---TCRSTDGQCPCLRNYAGRACGQCQIGFFDFPYCRSCNCHSAGIVVTKETPTGCYRKNPDRCDCKQNVEGSTCNRCKVNYYNMQLDNPLGCTACNCSTFGS 697
FC NA +L+ + + C C + G+ C GG C C A+VIG++C++C TGY+GFPNC+ C+C G++ D GQC C P+ C C+ +G C C+C G L TC + GQC C N GR C C GF +P CR C+CH AG T G +C CK+NV+G C++C + +++ NP GCT C C FG+
Sbjct: 1419 FCRNAAASLSLFYNNGARPCGCHEVGATGPTCEPFGGQCPCHAHVIGRDCSRCATGYWGFPNCRPCDC---GARLCD-ELTGQCICPPRTIPPDCLLCQPQTFGCHPLVGCEECNCSGPGIQELTDPTCDTDSGQCKCRPNVTGRRCDTCSPGFHGYPRCRPCDCHEAG------TAPGVCDPLTGQCYCKENVQGPKCDQCSLGTFSLDAANPKGCTRCFC--FGA 1633 HSP 4 Score: 121.709 bits (304), Expect = 1.971e-27 Identity = 79/201 (39.30%), Postives = 100/201 (49.75%), Query Frame = 2
Query: 359 RSCSCDRRGSFTLTCRSTDGQCPCLRNYAGRACGQCQIGFFDFPYCRSCNCHSAGIVVTKETPTGCYRKNPDRCDCKQNVEGSTCNRCKVNYYNMQLDNPL-GCTACNCSTFGSIRGAG-TCHRENGQCICQPNVIGRRCDTCKDGFYVVKKDKVFSCQPCLCSSGGSLHGVCDKITGQCKCKPKVGGLKCDKEEEGGYYL 955
R C C G+ TC GQCPC + GR C +C G++ FP CR C+C G + E TG +C C C C+ + +PL GC CNCS G TC ++GQC C+PNV GRRCDTC GF+ + C+PC C G+ GVCD +TGQC CK V G KCD+ G + L
Sbjct: 1436 RPCGCHEVGATGPTCEPFGGQCPCHAHVIGRDCSRCATGYWGFPNCRPCDC---GARLCDEL-TG-------QCICPPRTIPPDCLLCQPQTFGC---HPLVGCEECNCSGPGIQELTDPTCDTDSGQCKCRPNVTGRRCDTCSPGFHGYPR-----CRPCDCHEAGTAPGVCDPLTGQCYCKENVQGPKCDQCSLGTFSL 1617 HSP 5 Score: 106.686 bits (265), Expect = 7.328e-23 Identity = 93/313 (29.71%), Postives = 127/313 (40.58%), Query Frame = 2
Query: 71 FTSQTFTCNCDKRGSVSQECNRIGGHC-KCKANVIGKNCNKCKTGYYGFPN-----CKACNCFIAGSK---TADCNRYG---QCACKPQYTGRTCNRCRSGNWGFP-----DCRSCSCDRRGSFTLT---CRSTDGQC-PCLRNYAGRACGQCQIGFFDFPY----CRSCNCHSAGIVVTKETPTGCYRKNPD--RCDCKQNVEGSTCNRCKVNYYNMQLDNPLGCTACNCSTFGSIRGAGTCHRENGQCICQPNVIGRRCDTCKDGFYVVKKDKVFSCQPCLCSSGGSLHGVCDKITGQCKCKPKVGGLKCD 928
F + C C S C G C C+ N G +C +C+ G+ + C +C C ++ C G QC CKP Y G +C RC G +G P C+ C C G L C G C CLR+ G C C GF+ C C+C TP G +P C CK V G C+RC+ ++ D GC C C G CH ++GQC C+P +G +C C G++ + + C+ C C G CD TG+C C P + G +CD
Sbjct: 1857 FLGRCVPCQCHGH---SDRCLPGSGVCVDCQHNTEGAHCERCQAGFVSSRDDPSAPCVSCPCPLSVPSNNFAEGCVLRGGRTQCLCKPGYAGASCERCAPGFFGNPLVLGSSCQPCDCSGNGDPNLLFSDCDPLTGACRGCLRHTTGPRCEICAPGFYGNALLPGNCTRCDC----------TPCGTEACDPHSGHCLCKAGVTGRRCDRCQEGHFG--FDGCGGCRPCAC---GPAAEGSECHPQSGQCHCRPGTMGPQCRECAPGYWGLPEQ---GCRRCQCPG-----GRCDPHTGRCNCPPGLSGERCD 2143 HSP 6 Score: 98.9821 bits (245), Expect = 1.546e-20 Identity = 66/210 (31.43%), Postives = 85/210 (40.48%), Query Frame = 2
Query: 224 KACNCFIAGSKTADCNRYG-QCACKPQYTGRTCNRCRSGNWGFPDCRSCSCDRRGSFTLTCRSTDGQCPCLRNYAGRACGQCQ---IGFFDFPYCRSCNCHSAGIVVTKETPTGCYRKNPDRCDCKQNVEGSTCNRCKVNYYNMQLDNPLGCTACNCSTFGSIRGAGTCHRENGQCICQPNVIGRRCDTCKDGFYVVKKDKVFSCQPCLC 841
+ C C G+ C +G QC C GR C+RC +G WGFP+CR C C R C GQC C C CQ G C CNC GI +E + +C C+ NV G C+ C ++ C C+C G+ G C GQC C+ NV G +CD C G + + C C C
Sbjct: 1436 RPCGCHEVGATGPTCEPFGGQCPCHAHVIGRDCSRCATGYWGFPNCRPCDCGAR-----LCDELTGQCICPPRTIPPDCLLCQPQTFGCHPLVGCEECNCSGPGI---QELTDPTCDTDSGQCKCRPNVTGRRCDTCSPGFHGYPR-----CRPCDCHEAGT--APGVCDPLTGQCYCKENVQGPKCDQCSLGTFSLDAANPKGCTRCFC 1630 HSP 7 Score: 95.5153 bits (236), Expect = 1.969e-19 Identity = 91/300 (30.33%), Postives = 125/300 (41.67%), Query Frame = 2
Query: 149 CKCKANVIGKNCNKCKTGYYG------FPNCKACNCFIAGSKTADCNRYGQCA-CKPQYTGRTCNRCRSGNWGFPD-----CRSCSCDRR---GSFTLTC--RSTDGQCPCLRNYAGRACGQCQIGFFDFPY-----CRSCNCHSAG---IVVTKETP-TGCYRKNPDRCDCKQNVEGSTCNRCKVNYYNMQLDNPLGCTACNCSTFGSIRGAGTCHRENGQCICQPNVIGRRCDTCKDGFYVVKKDKVFSCQPCLCSSGGSLHGV-CDKITGQCKCKPKVGGLKCDKEEEGGYYLPSIG 967
C C A+ G +C +C G+Y C C C G G C C+ G C RC++G D C SC C +F C R QC C YAG +C +C GFF P C+ C+C G ++ + P TG R C ++ G C C +Y L P CT C+C+ G+ C +G C+C+ V GRRCD C++G + D C+PC C G + G C +GQC C+P G +C + G + LP G
Sbjct: 1831 CLCPASYRGDSCQECAPGFYRDVKGLFLGRCVPCQCH--GHSDRCLPGSGVCVDCQHNTEGAHCERCQAGFVSSRDDPSAPCVSCPCPLSVPSNNFAEGCVLRGGRTQCLCKPGYAGASCERCAPGFFGNPLVLGSSCQPCDCSGNGDPNLLFSDCDPLTGACR------GCLRHTTGPRCEICAPGFYGNAL-LPGNCTRCDCTPCGTE----ACDPHSGHCLCKAGVTGRRCDRCQEGHFGF--DGCGGCRPCAC--GPAAEGSECHPQSGQCHCRPGTMGPQCRECAPGYWGLPEQG 2113 HSP 8 Score: 85.8853 bits (211), Expect = 1.528e-16 Identity = 67/224 (29.91%), Postives = 93/224 (41.52%), Query Frame = 2
Query: 32 GFCSNALVTLTSEFTSQTFTCNCDKRGS---VSQECNRIGGHCK-CKANVIGKNCNKCKTGYYG---FP-NCKACNCFIAGSKTADCNRYGQCACKPQYTGRTCNRCRSGNWGFPDC---RSCSCDRRGSFTLTCRSTDGQCPCLRNYAGRACGQCQIGFFDFPY--CRSCNCHSAGIVVTKETPTGCYRKNPDRCDCKQNVEGSTCNRCKVNYYNMQLDNPLG 664
GF N LV S C+C G + +C+ + G C+ C + G C C G+YG P NC C+C G++ D G C CK TGR C+RC+ G++GF C R C+C + C GQC C G C +C G++ P CR C C P G + RC+C + G C+ C + P+G
Sbjct: 1954 GFFGNPLV-----LGSSCQPCDCSGNGDPNLLFSDCDPLTGACRGCLRHTTGPRCEICAPGFYGNALLPGNCTRCDCTPCGTEACD-PHSGHCLCKAGVTGRRCDRCQEGHFGFDGCGGCRPCACGPAAEGS-ECHPQSGQCHCRPGTMGPQCRECAPGYWGLPEQGCRRCQC-----------PGGRCDPHTGRCNCPPGLSGERCDTCSQQHQVPVPGGPVG 2159 HSP 9 Score: 85.5001 bits (210), Expect = 1.951e-16 Identity = 75/255 (29.41%), Postives = 98/255 (38.43%), Query Frame = 2
Query: 77 SQTFTCNCDKRGSVSQECNRIGGHCKCKANVIGKNCNKCKTGYYGFP-----NCKACNCFIAGSKT---ADCNRY-GQC-ACKPQYTGRTCNRCRSGNWG---FP-DCRSCSCDRRGSFTLTCRSTDGQCPCLRNYAGRACGQCQIGFFDFPYCRSCNCHSAGIVVTKETPTGCYRKNPDRCDCKQNVEGSTCNRCKVNYYNMQLDNPLGCTACNCSTFGSIRGAGTCHRENGQCICQPNVIGRRCDTCKDGFYV 799
S F C RG +Q C CK G +C +C G++G P +C+ C+C G +DC+ G C C TG C C G +G P +C C C G T C G C C GR C +CQ G F F C C + G C+ ++ +C C+ G C C Y+ + GC C C G C G+C C P + G RCDTC V
Sbjct: 1921 SNNFAEGCVLRGGRTQ--------CLCKPGYAGASCERCAPGFFGNPLVLGSSCQPCDCSGNGDPNLLFSDCDPLTGACRGCLRHTTGPRCEICAPGFYGNALLPGNCTRCDCTPCG--TEACDPHSGHCLCKAGVTGRRCDRCQEGHFGFDGCGGCRPCACGPAAEGSE---CHPQS-GQCHCRPGTMGPQCRECAPGYWGLPEQ---GCRRCQCP-------GGRCDPHTGRCNCPPGLSGERCDTCSQQHQV 2151 HSP 10 Score: 83.9593 bits (206), Expect = 6.030e-16 Identity = 80/275 (29.09%), Postives = 105/275 (38.18%), Query Frame = 2
Query: 281 QCACKPQYTGRTCNRCRSGNWGFP----------DCRSCSC--------------DRRGSFTLTCRSTDGQC--PCLRNYAGRACGQCQIGFFDFP--------YCRSCNCHSAGIVVTKETPTGCYRKNPDRCDCKQNVEGSTCNRCKVNYYNMQLDNPLGCTA---------------CNCSTFGSIRGAGTCHRENGQCICQPNVIGRRCDTCKDGFYVVKKDKVFSCQPCLCSSGGSLHGVCDKITGQCKCKPKVGGLKCDKEEEGGYYLP 958
QC C+ G TC+RC G P +C+SC+C RR S +L G C + G C +C GF+ P CR CNC S T E TG RC C+ N G C+ C + P ++ C+CS G+ A G+C+C+PN G C+ C GFY CQPC CSS G CD TGQC+C+ G CD+ G ++ P
Sbjct: 321 QCTCQHNTCGGTCDRCCPGFNQQPWKPATANSANECQSCNCYGHATDCYYDPEVDRRRASQSLDGTYQGGGVCIDCQHHTTGVNCERCLPGFYRSPNHPLDSPHVCRRCNCESDFTDGTCEDLTG-------RCYCRPNFSGERCDVCAEGFTGFPSCYPTPSSSNDTREQVLPAGQIVNCDCSAAGTQGNACRKDPRVGRCLCKPNFQGTHCELCAPGFYGP------GCQPCQCSSPGVADDRCDPDTGQCRCRVGFEGATCDRCAPGYFHFP 582 The following BLAST results are available for this feature:
BLAST of TCONS_00002815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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