TCONS_00002847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002847
Unique NameTCONS_00002847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002847 ID=TCONS_00002847|Name=TCONS_00002847|organism=Clytia hemisphaerica|type=transcript|length=358bp
GCAACGAAAAAGATCAAAGAGGCATTTGAAGCAAACAAATCGTCTTACCG
GCCATGTCCTGAAAATGAGGACAGCGGATCGATCAGTACGCAATCTTCaa
tctttttgtcaattctatGCGTGTTATCAACACTGATATTATGGAGATAA
GTTGCGTTTTTAACATTATGGAGGTAAAATGCacgaattttaattcactt
atCAAAGGATTTGAGTtggattttataaaagaattagaatatttaaaatt
tcaataaaaaaatgatgaGGAATGCCGACACTGCAACACGTTATTCGTGA
TATTCGCAACGTAGTGTTTCTACAAAAGCACCCAAAAAGGACCGAGcgtt
tgccacta
Run BLAST on NCBI

transcript from alignment at sc0000023:136724..137597-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002847 ID=TCONS_00002847|Name=TCONS_00002847|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at sc0000023:136724..137597- (Clytia hemisphaerica)
GCAACGAAAAAGATCAAAGAGGCATTTGAAGCAAACAAATCGTCTTACCG
GCCATGTCGTAAGTTTTGTCTCTTTCGTCCGGGGGACTAGGCTTTCAAAA
TGTCAGTTAAAACTGAACCTTAGAAAAACTAAATTTTTGTGAAACTTAAA
GAAAAAAAATAGGCTAAAAGAGGAGACTTCGATTTACAACTTTTTGTTGT
TTTAGTTGCTTCGACCGTTCTTACTTTTCAAAGTTTAAAGAAATAAAAGC
GCTATTGAAAGTTTCATTTTTACATAAGTGTTCCCGTTTAATATCAGTCA
CATATTTCATATCAGGACAGTGTCTGTCCATTGTTATTTTATGCTGATAT
ATGCAAAATTTGTTTTTTCCCTCTTTCTGACCTATCTCGCTCCACATCCG
TGTCAATCCTATGTGAAAAAGCTTGTGAATTAAAATTGATGAGTAAGCAA
ACGGGATCACTTTTATTTAAAAACAAAAACTTTTTTTGTTTTTAAAAGAC
ATAATCTTAGGTTCCAAATAAACTGCGAGTATTTTAAATGAAATTTCTTT
ATGAATTTCAATTTCTTTCTATAGCTGAAAATGAGGACAGCGGATCGATC
AGTACGCAATCTTCAATCTTTTTGTCAATTCTATGCGTGTTATCAACACT
GATATTATGGAGATAAGTTGCGTTTTTAACATTATGGAGGTAAAATGCAC
GAATTTTAATTCACTTATCAAAGGATTTGAGTTGGATTTTATAAAAGAAT
TAGAATATTTAAAATTTCAATAAAAAAATGATGAGGAATGCCGACACTGC
AACACGTTATTCGTGATATTCGCAACGTAGTGTTTCTACAAAAGCACCCA
AAAAGGACCGAGCGTTTGCCACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001553XLOC_001553Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002847-exon-sc0000023-1575043694:137540..137597TCONS_00002847-exon-sc0000023-1575043694:137540..137597Clytia hemisphaericaexon
TCONS_00002847-exon-sc0000023-1575043694:136724..137023TCONS_00002847-exon-sc0000023-1575043694:136724..137023Clytia hemisphaericaexon
TCONS_00002847-exon-sc0000023-1510915933:137540..137597TCONS_00002847-exon-sc0000023-1510915933:137540..137597Clytia hemisphaericaexon
TCONS_00002847-exon-sc0000023-1510915933:136724..137023TCONS_00002847-exon-sc0000023-1510915933:136724..137023Clytia hemisphaericaexon
TCONS_00002847-exon-sc0000023-1491911889:137540..137597TCONS_00002847-exon-sc0000023-1491911889:137540..137597Clytia hemisphaericaexon
TCONS_00002847-exon-sc0000023-1491911889:136724..137023TCONS_00002847-exon-sc0000023-1491911889:136724..137023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000023supercontigsc0000023:136724..137597 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.2392	19.504	42.5961	40.0911	0.963296	1.01495	1.22449	2.00612	11.8382	10.6869	13.7503	12.8447	44.9733	33.8777	20.0102	21.474	20.3769	29.3132	94.1575	89.2588	30.6185	32.3396	26.7547	26.8059	12.2709	11.6359	11.1007	8.36253	49.4201	37.9654
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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