Sox10 (polypeptide) - C. hemisphaerica

Overview
NameSox10
Unique NameTCONS_00073050-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00073050-protein ID=TCONS_00073050-protein|Name=Sox10|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MYNTMNTMVVQAKPEMMTHIPHPHHQLKPGVGGPGSPAMQHPGLVAHPGL
VGLNGDNHVKRPMNAFMVWSRGKRRQMAQEHPRMHNSEISKRLGAQWKVL
TPEEKQPFIDEAKRLRAVHIQEHPDYKYKPKRRKPKQMKKDMYPAYSNMA
ASTTIIPGMDPKYGGMAYQQSMAYGISTMSPDLYGKMNAAYAYPAAISPG
YPVMYSNYPMTTMGTTAPSAGSGSGGAPSPTSSNGTRGYNTASLGSPNGS
STGATMADSNANTTYRPTSTEYMTSKSYYINGGQYSPLPAANATQGHSQQ
PQAARYPSPHDESRISQSVVSQSNSDAATTGSILMPKSVNGSAEEHSPSP
PTYPSTNTPVGRHWTPSGGSGAPTQDMTSGNFH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045293XLOC_045293Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00073050TCONS_00073050Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 58..128
e-value: 7.3E-28
score: 108.6
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 59..127
e-value: 4.9E-26
score: 90.9
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 54..153
e-value: 1.3E-30
score: 105.3
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 59..127
score: 22.281
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 54..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 289..383
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 58..125
e-value: 3.54134E-38
score: 132.037

Blast
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BLAST of Sox10 vs. Swiss-Prot (Human)
Match: SOX2 (Transcription factor SOX-2 OS=Homo sapiens GN=SOX2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.273e-42
Identity = 65/90 (72.22%), Postives = 80/90 (88.89%), Query Frame = 0 
Query:   54 NGDNHVKRPMNAFMVWSRGKRRQMAQEHPRMHNSEISKRLGAQWKVLTPEEKQPFIDEAKRLRAVHIQEHPDYKYKPKRRKPKQMKKDMY 143
            N  + VKRPMNAFMVWSRG+RR+MAQE+P+MHNSEISKRLGA+WK+L+  EK+PFIDEAKRLRA+H++EHPDYKY+P+R+    MKKD Y
Sbjct:   36 NSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKY 125
The following BLAST results are available for this feature:
BLAST of Sox10 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX21.273e-4272.22Transcription factor SOX-2 OS=Homo sapiens GN=SOX2... [more]
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