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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00071763-protein ID=TCONS_00071763-protein|Name=TCONS_00071763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=550bp
MMHGSQTEPAISSMTSERNHKNLSHGSRTSINSQRSTNKKVNSHVSFDES
TAAPSSKKPGALSAAGGKKSVDDNFSSSVLQTVFALRWQKKAAQKKKKPD
DFQQMYMHSMSGALGSIIGDEFDGRKTSGTSSEYGDGEDLEALRILALEK
LQAARTRPVAFAVRANYGYNGSEDDDSPVHGMAVSFEKDDCLHIKDKFNK
DWWIGRVVKEGHNIGFVPSPDKLESIRQSGVSGKLKMRQSSTSSNMNLHD
DPQNQRSPLGEAGGNNSFDDETVNSPVRNVSTESNNTNNNNTTNSLNAQK
GKKGIFKKNEQLHPYYVIPSMRPIIFVGPSLKGYEVTDMMQKALFDYLKH
RFSERIIFTRVNADISLAKRSNLNNQNRQPNFPKKSNGQAGLAEVQEEVN
RIFELCRSSQLVVLDCDTINNPSQVIKTSLAPIIVAIKIASPKVLTRLIK
SRGKNQVKHLNIQMIAADKLSQCNEEMFDVVLDENQLEDACEHLGEFLEA
YWRAAVPGAQEGLISQENGGFVNQGGPNGAGYNGVDQYGTPQRNLRTAQV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0070588 | calcium ion transmembrane transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005245 | voltage-gated calcium channel activity |
| GO:0005515 | protein binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005891 | voltage-gated calcium channel complex |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0070588 |
calcium ion transmembrane transport |
| cellular_component |
GO:0005891 |
voltage-gated calcium channel complex |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0005245 |
voltage-gated calcium channel activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000584 | Voltage-dependent calcium channel, L-type, beta subunit | PRINTS | PR01626 | LCACHANNELB | coord: 360..374
score: 83.73
coord: 394..408
score: 66.47
coord: 329..343
score: 100.0
coord: 314..328
score: 70.78
coord: 448..463
score: 77.57
coord: 344..359
score: 68.93
coord: 464..475
score: 56.86
coord: 409..424
score: 73.35
coord: 427..443
score: 81.31 |
| IPR008145 | Guanylate kinase/L-type calcium channel beta subunit | SMART | SM00072 | gk_7 | coord: 320..502
e-value: 2.6E-15
score: 66.8 |
| IPR008145 | Guanylate kinase/L-type calcium channel beta subunit | PFAM | PF00625 | Guanylate_kin | coord: 320..501
e-value: 3.8E-34
score: 117.9 |
| None | No IPR available | GENE3D | 2.30.30.40 | | coord: 143..308
e-value: 5.7E-21
score: 74.6 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 309..515
e-value: 7.3E-39
score: 132.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 214..302 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..71 |
| None | No IPR available | CDD | cd11863 | SH3_CACNB | coord: 161..222
e-value: 1.27688E-34
score: 123.542 |
| IPR001452 | SH3 domain | PROSITE | PS50002 | SH3 | coord: 158..219
score: 11.124 |
| IPR001452 | SH3 domain | SUPERFAMILY | 50044 | SH3-domain | coord: 147..247
coord: 284..317 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 319..504 |
Blast
BLAST of TCONS_00071763-protein vs. Swiss-Prot (Human)
Match: CACB2 (Voltage-dependent L-type calcium channel subunit beta-2 OS=Homo sapiens GN=CACNB2 PE=1 SV=3) HSP 1 Score: 412.535 bits (1059), Expect = 3.298e-137 Identity = 217/397 (54.66%), Postives = 279/397 (70.28%), Query Frame = 0 Query: 123 DGRKTSGTSSEYGDGEDLEALRILALEKLQA----ARTRPVAFAVRANYGYNGSEDDDSPVHGMAVSFEKDDCLHIKDKFNKDWWIGRVVKEGHNIGFVPSPDKLESIR----QSGVSGKLKMRQSSTSSNMNLHDD-PQNQRS-PLGEAGGNNS--FDDETVNSPVRNVSTESNNTNNNNTTNSLNAQKGKKGIFKKNEQLHPYYVIPSMRPIIFVGPSLKGYEVTDMMQKALFDYLKHRFSERIIFTRVNADISLAKRSNLNNQNRQPNFPKKSNGQAGLAEVQEEVNRIFELCRSSQLVVLDCDTINNPSQVIKTSLAPIIVAIKIASPKVLTRLIKSRGKNQVKHLNIQMIAADKLSQCNEEMFDVVLDENQLEDACEHLGEFLEAYWRAAVP 507
D + + S+ ED EA+R A + QA A+T+PVAFAVR N Y+ + +DD PV GMA+SFE D LH+K+KFN DWWIGR+VKEG IGF+PSP KLE++R Q GK +S +S+ +L D P +++S P A ++ D E + P + S + + N+ S ++++ + FKK E PY V+PSMRP++ VGPSLKGYEVTDMMQKALFD+LKHRF RI TRV ADISLAKRS LNN ++ ++SN ++ LAEVQ E+ RIFEL R+ QLVVLD DTIN+P+Q+ KTSLAPIIV +KI+SPKVL RLIKSRGK+Q KHLN+QM+AADKL+QC E+FDV+LDENQLEDACEHL ++LEAYW+A P
Sbjct: 75 DSYTSRPSDSDVSLEEDREAVRREAERQAQAQLEKAKTKPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKQGKFYSSKSGGNSSSSLGDIVPSSRKSTPPSSAIDIDATGLDAEENDIPANHRSPKPSA----NSVTSPHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLAKRSVLNNPSKHAII-ERSNTRSSLAEVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIIVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWKATHP 466
The following BLAST results are available for this feature:
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