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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00067350-protein ID=TCONS_00067350-protein|Name=TCONS_00067350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1629bp
MRLLILLSFVLNYVWTQDFANNDEYQFGRAIKCKRDDGIGQRCMPVFENV
AYNRIVVANNTCGTYGKPEEYCVQTGVSGATKICETCYEKVPGQNHPADL
MTDIKIDGNPTWWQSQTLLDNRYGVHLILDFKKKYNIAFIRIRFHTIRPH
SFAIHKKSTYSPSERWLPYQFYSRTCNDTYGLPNKGIVTLANQNIALCTD
RYSGMIPLSGGNVAYLTLDHRPGKNNFDRYPSLQEWVTVTQLKISLDQLN
TFGDEVFGDPKVLKSYYFAISDIAVGGRCKCNGHASTCARNQNTARYYCE
CDHNTAGVDCEKCLPLYNDRPWRRASGRFANPCKKCDCNGLADTCVFDEQ
LWIDSNYRSGGRCVNCQKNTDGVNCERCKQYHYRKTSSESCTPCNCNQDG
SRSASCNNDGRCSCKPGVTGDKCDRCISGYYGFSSTGCQQCYCDKEGSLS
NTCDATGQCKCKENVMGKRCDQCKPNHFDLDTTNPKGCKACFCNGHGVSC
THAQGIQSKLISSTFDTDLNGWRLEDQYGNDYTNLLRRQQGTQHITSEAV
GSKTLYMVAPSRYLGDKLSSYAKNFAFTYGIYREPEDPEIVTSREDIIFE
GAGMTATYEITSQNNERPKGRFVKFNYKLVEPSGMTTFNFQKLLSDLTAI
KIRTTFLKNRRFAIDDVNMESTQYVSLNSLDQVTWKEKCQCQVGYAGEQC
EKCQPGFTRENVGSGPLGRCVPCECNNHGTRCDPETGICECQDNTSGRNC
ELCKKGYYGNPTRGTKGDCQPCPCIFANECILIGQSVKCTDCPEGHIGDN
CEKCADGYFGDPEGKLGTPTKCQRCDCNGNVDPNAIGNCDGLTGACLKCI
YNTTNGDEEKCEECADGFYGDALAEPKGNCTACKCFEPGTKKPAGHVAGE
AISCDKNGKCECLDNVKGDHCDQCPAGHWNVQSGNGCEKCNCHPDGSIGE
DCDIETGQCKCRPGVAGRTCNQCAPGHFEFSADGCKACNCHPDGSVHQNC
TSDGVCVCKPGVLGIKCDQCPENNYNLSVGCIACPKCFDLVQLAVNKLRQ
RLSTMNLTKGNFTNEEVGIDVRDENFENAIRALDKAIDELKKKTNSLLDG
DKQLFEFFDGLRKQFEKINERFGELKSMVEQSKEASEKGEVEVTRAEEII
EEIKKLLQDAEDKIAQESAKLFDKNDDSAVDLSDLAKEMREIAKEARKLA
TKHEKEAGEIQSTTDMALNQSTNAYNTAKMARDMEEKINKELKENVVDVD
EAMKLAEESRKLINDSVAESNAAIADGKKLIDEAMEELPDFKAKEMKESA
DEKTKSASDVSEKSDQLLKENKEAIEQLKKDDEEARRLMKEGRELKADSN
DLYAKAKNASDEAMQAQEDGKRVANEAKEMLKTLMEFEETIAKSKANATE
AMKLIPLIKKLIKEANEVANVADKKVSGAEGDAEESHNTASNAHNVTMAA
KNDIDDLIAQAKKLLNETMSFMMNEVVETQNNIKETDKKLDEYKEIAIED
GKKVDKASDDSKMAAEVASKANNDLTKSLEDVDNLIETIENLDEINLAEL
EEAERRFAAAQDQIDGAISFEINSLQNKLKSQNATITEYELDLDPLRAQV
EFVHQLYQYLPKTCFRSPEGLEGNQNAKK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 1239..1259 |
| None | No IPR available | COILS | Coil | Coil | coord: 1447..1467 |
| None | No IPR available | COILS | Coil | Coil | coord: 1476..1496 |
| None | No IPR available | COILS | Coil | Coil | coord: 1307..1397 |
| None | No IPR available | COILS | Coil | Coil | coord: 1572..1592 |
| None | No IPR available | COILS | Coil | Coil | coord: 1182..1206 |
| None | No IPR available | COILS | Coil | Coil | coord: 1143..1177 |
| None | No IPR available | COILS | Coil | Coil | coord: 1073..1096 |
| None | No IPR available | COILS | Coil | Coil | coord: 1522..1542 |
| None | No IPR available | PRINTS | PR00011 | EGFLAMININ | coord: 999..1017
score: 42.34
coord: 952..970
score: 56.94
coord: 971..999
score: 27.27
coord: 732..750
score: 47.37 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 723..772
e-value: 8.1E-14
score: 51.2
coord: 441..491
e-value: 7.5E-9
score: 35.3 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 939..986
e-value: 1.1E-9
score: 38.0
coord: 882..938
e-value: 1.0E-6
score: 28.5
coord: 394..440
e-value: 5.6E-10
score: 38.9
coord: 987..1037
e-value: 5.6E-5
score: 22.9
coord: 825..881
e-value: 2.9E-7
score: 30.2 |
| None | No IPR available | GENE3D | 1.10.287.620 | | coord: 1472..1608
e-value: 0.051
score: 12.5 |
| None | No IPR available | GENE3D | 2.10.25.10 | | coord: 492..722
e-value: 5.4E-14
score: 51.7
coord: 776..824
e-value: 3.8E-8
score: 33.0
coord: 279..336
e-value: 2.5E-9
score: 36.8
coord: 337..393
e-value: 1.5E-8
score: 34.2 |
| None | No IPR available | GENE3D | 1.20.120.570 | | coord: 1073..1234
e-value: 5.2E-5
score: 22.2 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1292..1316 |
| None | No IPR available | CDD | cd00055 | EGF_Lam | coord: 987..1034
e-value: 1.67502E-8
score: 51.9714 |
| None | No IPR available | CDD | cd00055 | EGF_Lam | coord: 722..770
e-value: 2.01613E-13
score: 66.609 |
| None | No IPR available | CDD | cd00055 | EGF_Lam | coord: 278..324
e-value: 1.94412E-5
score: 43.1118 |
| None | No IPR available | CDD | cd00055 | EGF_Lam | coord: 824..874
e-value: 7.70944E-5
score: 41.1858 |
| None | No IPR available | CDD | cd00055 | EGF_Lam | coord: 903..938
e-value: 1.35089E-5
score: 43.497 |
| None | No IPR available | CDD | cd00055 | EGF_Lam | coord: 441..489
e-value: 1.31224E-11
score: 61.2162 |
| None | No IPR available | CDD | cd00055 | EGF_Lam | coord: 940..986
e-value: 7.66914E-14
score: 67.7646 |
| None | No IPR available | CDD | cd00055 | EGF_Lam | coord: 393..439
e-value: 2.61372E-12
score: 63.1422 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 441..488 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 723..774 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 778..827 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 279..338 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 394..443 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 336..396 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 825..875 |
| None | No IPR available | SUPERFAMILY | 58104 | Methyl-accepting chemotaxis protein (MCP) signaling domain | coord: 1075..1318 |
| None | No IPR available | SUPERFAMILY | 57196 | EGF/Laminin | coord: 940..981 |
| IPR008211 | Laminin, N-terminal | SMART | SM00136 | LamNT_2 | coord: 37..277
e-value: 1.1E-73
score: 260.8 |
| IPR008211 | Laminin, N-terminal | PFAM | PF00055 | Laminin_N | coord: 43..277
e-value: 3.6E-65
score: 219.7 |
| IPR008211 | Laminin, N-terminal | PROSITE | PS51117 | LAMININ_NTER | coord: 39..278
score: 42.653 |
| IPR002049 | Laminin EGF domain | SMART | SM00180 | lamegf_3 | coord: 940..985
e-value: 1.1E-14
score: 64.7
coord: 441..488
e-value: 1.8E-12
score: 57.4
coord: 988..1031
e-value: 1.5E-7
score: 41.1
coord: 825..880
e-value: 4.6E-5
score: 32.8
coord: 883..937
e-value: 3.6E-8
score: 43.1
coord: 394..438
e-value: 2.1E-11
score: 53.9
coord: 723..769
e-value: 2.9E-11
score: 53.4
coord: 336..391
e-value: 1.8E-8
score: 44.1
coord: 772..822
e-value: 1.2E-4
score: 31.4
coord: 677..720
e-value: 2.9
score: 5.8
coord: 279..333
e-value: 0.0019
score: 27.4 |
| IPR002049 | Laminin EGF domain | PFAM | PF00053 | Laminin_EGF | coord: 825..880
e-value: 7.2E-5
score: 22.7
coord: 988..1028
e-value: 1.2E-5
score: 25.3
coord: 687..711
e-value: 2.2E-4
score: 21.2
coord: 883..937
e-value: 7.3E-6
score: 25.9
coord: 279..323
e-value: 2.3E-5
score: 24.3
coord: 940..985
e-value: 4.1E-11
score: 42.7
coord: 336..391
e-value: 4.6E-6
score: 26.6
coord: 441..488
e-value: 5.7E-12
score: 45.5
coord: 723..769
e-value: 1.1E-10
score: 41.4
coord: 778..822
e-value: 0.0029
score: 17.6 |
| IPR002049 | Laminin EGF domain | PROSITE | PS01248 | EGF_LAM_1 | coord: 459..493 |
| IPR002049 | Laminin EGF domain | PROSITE | PS01248 | EGF_LAM_1 | coord: 739..774 |
| IPR002049 | Laminin EGF domain | PROSITE | PS01248 | EGF_LAM_1 | coord: 959..990 |
| IPR002049 | Laminin EGF domain | PROSITE | PS01248 | EGF_LAM_1 | coord: 412..443 |
| IPR002049 | Laminin EGF domain | PROSITE | PS01248 | EGF_LAM_1 | coord: 1006..1037 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 825..882
score: 10.426 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 988..1033
score: 13.321 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 336..393
score: 11.512 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 394..440
score: 21.223 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 441..490
score: 19.928 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 772..824
score: 9.322 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 723..771
score: 19.604 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 279..335
score: 9.036 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 940..987
score: 22.327 |
| IPR002049 | Laminin EGF domain | PROSITE | PS50027 | EGF_LAM_2 | coord: 883..939
score: 12.94 |
| IPR000742 | EGF-like domain | SMART | SM00181 | egf_5 | coord: 984..1018
e-value: 97.0
score: 4.7
coord: 719..751
e-value: 69.0
score: 6.4
coord: 838..881
e-value: 43.0
score: 8.8
coord: 390..424
e-value: 72.0
score: 6.2
coord: 332..376
e-value: 180.0
score: 1.5
coord: 768..802
e-value: 3.6
score: 16.6 |
| IPR000034 | Laminin IV | SMART | SM00281 | LamB_3a | coord: 551..674
e-value: 1.9E-9
score: 47.4 |
| IPR000034 | Laminin IV | PFAM | PF00052 | Laminin_B | coord: 556..673
e-value: 1.8E-17
score: 63.5 |
| IPR000034 | Laminin IV | PROSITE | PS51115 | LAMININ_IVA | coord: 517..688
score: 19.382 |
| IPR001368 | TNFR/NGFR cysteine-rich region | SMART | SM00208 | TNFR_3 | coord: 378..412
e-value: 21.0
score: 7.4
coord: 973..1006
e-value: 1.6
score: 17.7 |
| IPR008979 | Galactose-binding domain-like | GENE3D | 2.60.120.260 | | coord: 47..275
e-value: 3.0E-9
score: 36.6 |
| IPR013032 | EGF-like, conserved site | PROSITE | PS00022 | EGF_1 | coord: 299..310 |
Blast
BLAST of TCONS_00067350-protein vs. Swiss-Prot (Human)
Match: LAMC1 (Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3) HSP 1 Score: 1142.1 bits (2953), Expect = 0.000e+0 Identity = 624/1605 (38.88%), Postives = 921/1605 (57.38%), Query Frame = 0
Query: 32 KCKRDDGIGQRCMPVFENVAYNRIVVANNTCGTYGKPEEYCVQTGVSGATKICETCYEKVPGQNHPADLMTDIKIDGNPTWWQSQTLLDN-RY--GVHLILDFKKKYNIAFIRIRFHTIRPHSFAIHKKSTYSPSERWLPYQFYSRTCNDTYGLPNKGIV-TLANQNIALCTDRYSGMIPLSGGNVAYLTLDHRPGKNNFDRYPSLQEWVTVTQLKISLDQLNTFGDEVFGDPKVLKSYYFAISDIAVGGRCKCNGHASTCARNQNTARYYCECDHNTAGVDCEKCLPLYNDRPWRRASGRFANPCKKCDCNGLADTCVFDEQLWIDSNYRSGGRCVNCQKNTDGVNCERCKQYHYRKTSSESCTPCNCNQDGSRSASCNNDGRCSCKPGVTGDKCDRCISGYYGFSSTGCQQCYCDKEGSLSNTCDATGQCKCKENVMGKRCDQCKPNHFDLDTTNPKGCKACFCNGHGVSCTHAQGIQSKLISSTFDTDLNGWRLEDQYGNDYTNLLRRQQGTQHITSEAVGSKTLYMVAPSRYLGDKLSSYAKNFAFTYGIYREPEDPEIVTSREDIIFEGAGMTATYEITSQNNERPKGRFVKFNYKLVEPS------GMTTFNFQKLLSDLTAIKIRTTFLKNRRFAIDDVNMESTQYVSLNSLDQVTWKEKCQCQVGYAGEQCEKCQPGFTRENVGSGPLGRCVPCECNNHGTRCDPETGICECQDNTSGRNCELCKKGYYGNPTRGTKGDCQPCPCIFANECILIGQS--VKCTDCPEGHIGDNCEKCADGYFGDPEGKLGTPTKCQRCDCNGNVDPNAIGNCDGLTGACLKCIYNTTNGDEEKCEECADGFYGDALA-EPKGNCTACKCFEPGTKKPAGHVAGEAISCDK-NGKCECLDNVKGDHCDQCPAGHWNVQSGNGCEKCNCHPDGSIGEDCDIETGQCKCRPGVAGRTCNQCAPGHFEFSADGCKACNCHPDGSVHQNCTSDGVCVCKPGVLGIKCDQCPENN-YNLS-VGCIACPKCFDLVQLAVNKLRQRLSTMNLTKGNF-TNEEVGIDVRDENFENAIRALDKAIDELKKKTNSLLDGDKQLFEFFDGLRKQFEKINERFGELKSMVEQSKEASEKGEVEVTRAEEIIEEIKKLLQDAEDKIAQESAKLFDKNDDSAVDLSDLAKEMREIAKEARKLATKHEKEAGEIQSTTDMALNQSTNAYNTAKMARDMEEKINKELKENVVDVDEAMKLAEESRKLINDSVAESNAAIADGKKLIDEAMEELPDFKAKEMKESADEKTKSASDVSEKSDQLLKENKEAIEQLKKDDEEARRLMKEGRELKADSNDLYAKAKNASDEAMQAQEDGKRVANEAKEMLKTLMEFEETIAKSKANATEAMKLIPLIKKLIKEANEVANVADKKVSGAEGDAEESHNTASNAHNVTMAAKNDIDDLIAQAKKLLNETMSFMMNEVVETQNNIKETDKKLDEYKEIAIEDGKKVDKASDDSKMAAEVASKANNDLTKSLEDVDNLIETIENLDEINLAELEEAERRFAAAQDQIDGA-ISFEINSLQNKLKSQNATITEYELDLDPLRAQVEFVHQLYQYLPKTCFRSP 1618
+C + G QRCMP F N A+N VVA NTCGT PEEYCVQTGV+G TK C C P H A +TD + TWWQSQT+L +Y ++L L K ++I ++R++FHT RP SFAI+K++ W+PYQ+YS +C +TY N+G + T ++ ALCTD +S + PL+GGNVA+ TL+ RP NFD P LQEWVT T ++++L++LNTFGDEVF DPKVLKSYY+AISD AVGGRCKCNGHAS C +N+ + C C HNT GVDCEKCLP +NDRPWRRA+ A+ C CDCNG + C FD +L+ + + GG C NCQ NTDG +CERC++ +R ++E+C+ C+C+ GS S C++ GRCSCKPGV GDKCDRC G++ + GC+ C CD GS+ TG+C CK+NV G C++CKP F+L+++NP+GC CFC GH CT+A G ISSTF D +GWR E + G++ + ++ + S++ + Y +AP+++LG ++ SY +N +F++ + R + S ED++ EGAG+ + + +Q N P VK+ ++L E + +T F FQKLL++LT+IKIR T+ + +DDV + S + TW E C C VGY G+ CE C G+ RE GP CV C CN H CDPETG+C C+DNT+G +CE C GYYG+ T GT DCQPCPC + C ++ ++ V CT+CP G G CE C DGYFGDP G+ G C+ C C+ N+DPNA+GNC+ LTG CLKCIYNT C+ C DGF+G+ LA P C AC C GT K + SC+ G+CECL +V G C C G +N+QSG GCE+C+CH GS CDI TGQC+C+PG+ G+ C +C HF F +GCK C+CHP+GS+ C DG C C+ G +G +CDQC EN YN S GC CP C+ LV+ V R +L + N T +E+ V D+ FE+ ++ ++ + +L ++ + D D+ L + + R +++ +E++ +E+ V E +IE + L+ A+ A S + D M +A+EARKLA +H++EA +I A + ST AYN E + E++E ++A ++++ K V E D I ++ +L ++ ++ A+ A ++ + DQ LK+ ++ E ++ + E + L+++G+ + ++ L A+A A A +A + G+ EA ++L L +F+ + +K A EA++ IP I + I EANE A + + A DA E+ N A A + A + + A+A++ E ++ + NEV ++E +K+L ++ A +D AS ++ A A KA N +T L +++L+E + LD ++L +L E E A+D++ + + +++ L+N+ K Q A I +Y D++ + + + + + LP CF +P
Sbjct: 39 ECTDEGGRPQRCMPEFVNAAFNVTVVATNTCGT--PPEEYCVQTGVTGVTKSCHLCDAGQPHLQHGAAFLTDYNNQADTTWWQSQTMLAGVQYPSSINLTLHLGKAFDITYVRLKFHTSRPESFAIYKRTREDGP--WIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNGHASECMKNE-FDKLVCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTGH--GGHCTNCQDNTDGAHCERCRENFFRLGNNEACSSCHCSPVGSLSTQCDSYGRCSCKPGVMGDKCDRCQPGFHSLTEAGCRPCSCDPSGSIDECNIETGRCVCKDNVEGFNCERCKPGFFNLESSNPRGCTPCFCFGHSSVCTNAVGYSVYSISSTFQIDEDGWRAEQRDGSEASLEWSSERQDIAVISDSYFPR--YFIAPAKFLGKQVLSYGQNLSFSFRVDRR----DTRLSAEDLVLEGAGLRVSVPLIAQGNSYPSETTVKYVFRLHEATDYPWRPALTPFEFQKLLNNLTSIKIRGTYSERSAGYLDDVTLASAR---PGPGVPATWVESCTCPVGYGGQFCEMCLSGYRRETPNLGPYSPCVLCACNGHSETCDPETGVCNCRDNTAGPHCEKCSDGYYGDSTAGTSSDCQPCPCPGGSSCAVVPKTKEVVCTNCPTGTTGKRCELCDDGYFGDPLGRNGPVRLCRLCQCSDNIDPNAVGNCNRLTGECLKCIYNTAGF---YCDRCKDGFFGNPLAPNPADKCKACNCNLYGTMK-------QQSSCNPVTGQCECLPHVTGQDCGACDPGFYNLQSGQGCERCDCHALGSTNGQCDIRTGQCECQPGITGQHCERCEVNHFGFGPEGCKPCDCHPEGSLSLQCKDDGRCECREGFVGNRCDQCEENYFYNRSWPGCQECPACYRLVKDKVADHRVKLQELESLIANLGTGDEM---VTDQAFEDRLKEAEREVMDLLREAQDVKDVDQNLMDRLQRVNNTLSSQISRLQNIRNTIEETGNLAEQARAHVENTERLIEIASRELEKAKVAAANVSVTQPESTGD--------PNNMTLLAEEARKLAERHKQEADDIVRVAKTANDTSTEAYNLLLRTLAGENQTAFEIEELNRKYEQAKNISQDLEKQAA-RVHEEAKRAGDKAVEIYASVAQLSPLDSETLENEANNIKMEAENLEQLIDQKLKDYEDLREDMRGKELEVKNLLEKGKTEQQTADQLLARADAAKALAEEAAKKGRDTLQEANDILNNLKDFDRRVNDNKTAAEEALRKIPAINQTITEANEKTREAQQALGSAAADATEAKNKAHEAERIASAVQKNATSTKAEAERTFAE-VTDLDNEVNNMLKQLQEAEKELKRKQDDADQDMMMAGMASQAAQEAEINARKAKNSVTSLLSIINDLLEQLGQLDTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIEEIMKDIRNLEDIRKTLPSGCFNTP 1604
The following BLAST results are available for this feature:
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