TCONS_00066564-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066564-protein
Unique NameTCONS_00066564-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length585

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066564-protein ID=TCONS_00066564-protein|Name=TCONS_00066564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp
MASARPPSTDGYDRPPRPPSSLSMMSTASSFTSQALDRLSEMNKCPKCNE
QIRDPRMLPCHHTFCADCIRQMIGSATRNEFLCPLDRTTITVPPLGMDAF
PPDNRMKELENIRIDLEQSLVLEDPETADLDINLESLNKGVKDIEHSSAM
AQHEVNTMFEAIQKSLKKKQDSFIQDIRRKSRRQISLLEFEKFRLIETKK
FQNEQFMGDSSFYEEEIIEPFNRGQSINTSTPPSPVSFRSRNHHYNSSTS
SEPRLALLACHIGQQHIEFNETEGGLTRLEEQVEKLGRVTCDFDLKVKLD
RNLLTLDEFPFGMKVGGNDSFEWQPSQPKGLCRRSPTSILMVSSGKSEVI
EMDNSFNVVCRISGRNVFSNNISDVASSNGYIYVADAGACQVVMLSKDGT
LVKRFGKAGTGAQEFKRPNGLCVDSKGRVIVSDSLNHRVKILSPDLKTVI
LTITNDRKRYKEAGRFSFPYGVACDKEDNIYIVDTNNKRLVQISKDGKFL
KEIYPADMADPRCVAVTSDHRILVTDRENAQLLIIDLHTNTTTRVSGITD
SHGREITFKQPYGVVVDGTDKVYVSDIERNALFVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041632XLOC_041632Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066564TCONS_00066564Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001258NHL_repeat
IPR0110426-blade_b-propeller_TolB-like
IPR013658SGL
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS
IPR013017NHL_repeat_subgr
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 45..86
e-value: 1.4E-6
score: 37.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 45..87
score: 12.209
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 44..90
e-value: 5.9224E-8
score: 48.9812
IPR001258NHL repeatPFAMPF01436NHLcoord: 510..534
e-value: 2.4E-4
score: 20.9
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 408..575
e-value: 2.6E-25
score: 88.7
coord: 313..407
e-value: 5.7E-5
score: 21.9
IPR013658SMP-30/Gluconolactonase/LRE-like regionPFAMPF08450SGLcoord: 330..505
e-value: 2.2E-7
score: 30.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 23..206
e-value: 2.9E-16
score: 59.1
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 45..84
e-value: 3.0E-8
score: 33.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..245
NoneNo IPR availableCDDcd05819NHLcoord: 368..585
e-value: 2.07414E-49
score: 172.118
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 39..93
NoneNo IPR availableSUPERFAMILY101898NHL repeatcoord: 326..584
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 60..69
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 511..538
score: 8.286
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 546..585
score: 6.147
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 402..445
score: 15.687
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 461..496
score: 9.416
IPR013017NHL repeat, subgroupPROSITEPS51125NHLcoord: 370..398
score: 7.319

Blast
[Close]
BLAST of TCONS_00066564-protein vs. Swiss-Prot (Human)
Match: LIN41 (E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens GN=TRIM71 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.127e-19
Identity = 60/203 (29.56%), Postives = 100/203 (49.26%), Query Frame = 0 
Query:  380 GYIYVADAGACQVVMLSKDGTLVKRFGKAGTGAQEFKRPNGLCVDSKGRVIVSDSLNHRVKILSPDLKTVILTITNDRKRYKEAGRFSFPYGVACDKEDNIYIVDTNNKRLVQISKDGKFLKEIYPADMA------DPRCVAVTSDHRILVTDRENAQLLIIDLHTNTTTRVSGITDSHGREITFKQPYGVVVDGTDKVYVSD 576
            GYI VAD    ++ +    G    +FG  G+   +F RP G+  D+  R++V+D  NHR++I + + + ++       K     G+F++P+ VA + E  I + DT N R+     DG FL + Y  + A       PR VA   +  ++VTD  N +LL+I     +   +      +G+   F +P GV VD   ++ V+D
Sbjct:  618 GYIIVADRSNNRIQVFKPCGAFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKDNHRIQIFTFEGQFLLKFGEKGTKN----GQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVFLNK-YGFEGALWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQ---FLRPQGVAVDQEGRIIVAD 812
The following BLAST results are available for this feature:
BLAST of TCONS_00066564-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIN413.127e-1929.56E3 ubiquitin-protein ligase TRIM71 OS=Homo sapiens... [more]
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