TCONS_00066533-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066533-protein
Unique NameTCONS_00066533-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length763

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066533-protein ID=TCONS_00066533-protein|Name=TCONS_00066533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=763bp
MRKSLFLYWNIFLVLCFVLQIHCKQTYSLIGNKGSNEGILVVEENGSLKF
TCSNYWGAQNSKVLCRELGYRKHLATNSKRASSIRTLRGHQKTFYPFDVT
CESNEKTLTECHRKYVKNVNIERHCGANSYVYIQCDSQIEERDNRTLEDP
FNVRLINKNVVQGPVSSGYLHISSSSSDGEGRLASVCIDDWSDASSLVAC
KNTGFSKVKKFTSSVYNDIDSNEMAFLRFRCHGNESILEQCKHETTEFCT
NNEIVFLECGTEDENAVITELNGEIRVRGGAYPSVGRVEVFDGQQWGTIC
DDQWDLFDANVVCQQLGFGSAIEATHWADNGEGLGNILLTNVACNGTEKH
LKDCIHSMDTSPCTHREDAGVRCRRPFVNHKMRIKLVGGKKPTEGRIEFL
DSKNEWSGICGIGFGRSEGEVVCRQLGLDFVKWAGRSYKYGLNYRKRMFD
VRCKGSESELSECSYSDYSRCRYYDMASVICTQYAPDLVMDIRLFKQSIK
VDTHPLHHLRCSFEERCLSPEVDNIWGRSGFHNRHLLKFTSRFLNKGAVT
FRPHIDKSSWQWHQCHEHYHSMETFAIYDLIDNNGYRIAHGQKASFCLED
SDCEPGYKKNFNCTDKGDQGITVNCADNYSNRIDCQWIDVTNVPFGNYSL
RVDANPLRNVTESDWLNNRAVCEIGYFNRDDIIVRGCTTDPCYQESFGGN
SFGHCCQFPFVYNGQLHYQCIQKNNSSENNGNNSELNNENRSWCSTTNDF
DQDGKWGYCSEKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041624XLOC_041624Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066533TCONS_00066533Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001190SRCR
IPR001695Lysyl_oxidase
IPR017448SRCR-like_dom
IPR000562FN_type2_col-bd
IPR019828Lysyl_oxidase_CS
IPR013806Kringle-like
Vocabulary: Molecular Function
TermDefinition
GO:0005044scavenger receptor activity
GO:0016641oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
GO:0005507copper ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0016020 membrane
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
molecular_function GO:0005044 scavenger receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00013FNTYPEIIcoord: 703..712
score: 52.93
coord: 743..758
score: 54.67
NoneNo IPR availableGENE3D1.20.5.950coord: 277..322
e-value: 8.0E-17
score: 60.0
NoneNo IPR availableGENE3D4.10.790.10coord: 323..373
e-value: 1.3E-18
score: 66.5
IPR001190SRCR domainPRINTSPR00258SPERACTRCPTRcoord: 294..305
score: 66.04
coord: 340..354
score: 42.52
coord: 275..291
score: 39.84
coord: 309..319
score: 66.38
coord: 362..374
score: 59.36
IPR001190SRCR domainPFAMPF00530SRCRcoord: 33..135
e-value: 1.8E-12
score: 47.5
coord: 279..373
e-value: 9.8E-26
score: 90.1
coord: 387..481
e-value: 4.4E-16
score: 59.1
coord: 168..259
e-value: 3.2E-10
score: 40.3
IPR001190SRCR domainPROSITEPS00420SRCR_1coord: 280..317
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 27..136
score: 14.859
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 275..374
score: 27.869
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 384..482
score: 19.058
IPR001190SRCR domainPROSITEPS50287SRCR_2coord: 153..260
score: 14.525
IPR001695Lysyl oxidasePRINTSPR00074LYSYLOXIDASEcoord: 542..563
score: 40.91
coord: 564..584
score: 59.52
coord: 655..672
score: 50.0
coord: 495..519
score: 36.0
coord: 635..654
score: 60.0
coord: 612..634
score: 30.43
IPR001695Lysyl oxidasePFAMPF01186Lysyl_oxidasecoord: 486..688
e-value: 6.4E-75
score: 251.2
IPR017448SRCR-like domainSMARTSM00202SR_3coord: 27..136
e-value: 6.0E-9
score: 45.7
coord: 384..482
e-value: 3.4E-18
score: 76.4
coord: 275..374
e-value: 3.0E-40
score: 149.7
coord: 153..260
e-value: 7.7E-5
score: 18.5
IPR017448SRCR-like domainGENE3D3.10.250.10coord: 150..270
e-value: 9.2E-14
score: 51.0
coord: 24..146
e-value: 9.3E-14
score: 51.0
coord: 381..492
e-value: 7.2E-21
score: 73.9
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 149..259
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 26..136
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 380..489
IPR017448SRCR-like domainSUPERFAMILY56487SRCR-likecoord: 273..375
IPR000562Fibronectin, type II, collagen-bindingSMARTSM00059FN2_2coord: 699..759
e-value: 1.5E-13
score: 61.0
IPR000562Fibronectin, type II, collagen-bindingGENE3D2.10.10.10coord: 693..760
e-value: 2.0E-16
score: 59.0
IPR000562Fibronectin, type II, collagen-bindingPFAMPF00040fn2coord: 706..759
e-value: 2.1E-13
score: 50.2
IPR000562Fibronectin, type II, collagen-bindingPROSITEPS51092FN2_2coord: 701..761
score: 17.009
IPR000562Fibronectin, type II, collagen-bindingCDDcd00062FN2coord: 700..759
e-value: 5.40397E-11
score: 58.0858
IPR019828Lysyl oxidase, conserved sitePROSITEPS00926LYSYL_OXIDASEcoord: 560..573
IPR013806Kringle-like foldSUPERFAMILY57440Kringle-likecoord: 697..761

Blast
[Close]
BLAST of TCONS_00066533-protein vs. Swiss-Prot (Human)
Match: LOXL2 (Lysyl oxidase homolog 2 OS=Homo sapiens GN=LOXL2 PE=1 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 7.184e-116
Identity = 233/686 (33.97%), Postives = 348/686 (50.73%), Query Frame = 0 
Query:   36 NEGILVVEENGSLKFTCSNYWGAQNSKVLCRELGYRKHLATNSKRASSIRTLRGHQKTFYPFDVTCESNEKTLTECHR--------KYVKNVNIERHCGANSYVYIQCDSQIE---ERDNRTLEDPFNVRLINKNVVQGPVSSGYLHISSSSSDGEGRLASVCIDDWSDASSLVACKNTGFSKVKKFTSSVYNDIDSN-EMAFLRFR--CHGNESILEQCKHETTEFCTNNEIVFLECGTEDENAVITELNGEI--------------------RVRGGAYPSVGRVEVFDGQQWGTICDDQWDLFDANVVCQQLGFGSAIEATHWADNGEGLGNILLTNVACNGTEKHLKDCIHSMDTSPCTHREDAGVRCRRPFVNHKMRIKLVGGKKPTEGRIEFLDSKNE---WSGICGIGFGRSEGEVVCRQLGLDFVKWAGRSYKY---GLNYRKR-MFDVRCKGSESELSECSY-SDYSRCRYYDM---ASVICTQYAPDLVMDIRLFKQSIKVDTHPLHHLRCSFEERCLSPEVDNIWGRSGFHNRHLLKFTSRFLNKGAVTFRPHIDKSSWQWHQCHEHYHSMETFAIYDLIDNNGYRIAHGQKASFCLEDSDCEPGYKKNFNCTDKGDQGITVNCADNYSNRIDCQWIDVTNVPFGNYSLRVDANPLRNVTESDWLNNRAVCEIGY 676
            +EG + V  +G     C + +    + V+CRELGY       +K  ++  +    +   +  ++ C  NE TL  C          K+ ++V +   C        + D+ +    E  N  +ED     +++    + PV  GY+ +    +        +C   W+  +S V C   GF   + + + VY    S  +  +  F   C G E+ +  CK          + V  E G     AV++ + G++                    R+RGGAY   GRVEV    +WGT+CDD+WDL  A+VVC++LGFGSA EA   +  G+G+G I L  + C G EK + DC  + ++  C H EDAGVRC  P +  + +++L GG+ P EGR+E L  +N    W  +CG  +G  E  VVCRQLGL F   A +   Y    +N  K  M  V+C G+E  L+ C +  +   C    +   A V C++ APDLV++  + +Q+  ++  P+  L+C+ EE CLS         +G+  R LL+F+S+  N G   FRP   + +W WH CH HYHSME F  YDL++ NG ++A G KASFCLED++CE   +KN+ C + GDQGIT+ C D Y + IDCQW+D+T+VP G+Y  +V  NP   V ESD+ NN   C   Y
Sbjct:   68 SEGRVEVYYDGQWGTVCDDDFSIHAAHVVCRELGY-----VEAKSWTASSSYGKGEGPIWLDNLHCTGNEATLAACTSNGWGVTDCKHTEDVGVV--CSDKRIPGFKFDNSLINQIENLNIQVEDIRIRAILSTYRKRTPVMEGYVEVKEGKT-----WKQICDKHWTAKNSRVVCGMFGFPGERTYNTKVYKMFASRRKQRYWPFSMDCTGTEAHISSCKLGPQVSLDPMKNVTCENGLP---AVVSCVPGQVFSPDGPSRFRKAYKPEQPLVRLRGGAYIGEGRVEVLKNGEWGTVCDDKWDLVSASVVCRELGFGSAKEAVTGSRLGQGIGPIHLNEIQCTGNEKSIIDCKFNAESQGCNHEEDAGVRCNTPAMGLQKKLRLNGGRNPYEGRVEVLVERNGSLVWGMVCGQNWGIVEAMVVCRQLGLGFASNAFQETWYWHGDVNSNKVVMSGVKCSGTELSLAHCRHDGEDVACPQGGVQYGAGVACSETAPDLVLNAEMVQQTTYLEDRPMFMLQCAMEENCLSASAAQTDPTTGY--RRLLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRHYHSMEVFTHYDLLNLNGTKVAEGHKASFCLEDTECEGDIQKNYECANFGDQGITMGCWDMYRHDIDCQWVDITDVPPGDYLFQVVINPNFEVAESDYSNNIMKCRSRY 736
The following BLAST results are available for this feature:
BLAST of TCONS_00066533-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOXL27.184e-11633.97Lysyl oxidase homolog 2 OS=Homo sapiens GN=LOXL2 P... [more]
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