TCONS_00066240-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00066240-protein
Unique Name	TCONS_00066240-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	148

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00066240-protein ID=TCONS_00066240-protein|Name=TCONS_00066240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MKLFLKVLGGQELTYTYDDSTTTVNEVKKFLVTKLNKPLSQIKLVYKGKT
LAAEKRLSDYNIQDQAKLHVAVKKTLISSSLKEEQVTPTKPKYKPEELWS
KLSEVLAKNYGPDESAVIMMQFRKDYECMLKTLSLDDIERIAEKNLTT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041453	XLOC_041453	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00066240	TCONS_00066240	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000626	Ubiquitin_dom
IPR029071	Ubiquitin-rel_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin domain	SMART	SM00213	ubq_7	coord: 1..73 e-value: 3.9E-13 score: 59.6
IPR000626	Ubiquitin domain	PFAM	PF00240	ubiquitin	coord: 3..74 e-value: 9.3E-14 score: 50.8
IPR000626	Ubiquitin domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..75 score: 15.645
None	No IPR available	GENE3D	3.10.20.90		coord: 1..79 e-value: 8.2E-17 score: 60.4
IPR029071	Ubiquitin-related domain	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..77

Blast

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BLAST of TCONS_00066240-protein vs. Swiss-Prot (Human)
Match: UBL4A (Ubiquitin-like protein 4A OS=Homo sapiens GN=UBL4A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.412e-23
Identity = 53/146 (36.30%), Postives = 88/146 (60.27%), Query Frame = 0

Query:    1 MKLFLKVLGGQELTYTYDDSTTTVNEVKKFLVTKLNKPLSQIKLVYKGKTLAAEKRLSDYNIQDQAKLHVAVKKTLISSSLKEEQVTPTKPKYKPEELWSKLSEVLAKNYGPDESAVIMMQFRKDYECMLKTLSLDDIERIAEKNL 146
            M+L +K L G+E +    +    V+ +K+ +  KLN P+ Q +L++KGK LA  KRLSDY+I   +KL++ VK   +   L EE          P ++W  +S+VLA+++   +++ ++ Q ++DYE  L  L+LDDIER+A + L
Sbjct:    1 MQLTVKALQGRECSLQVPEDEL-VSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP--LEKVLLEEGEAQRLADSPPPQVWQLISKVLARHFSAADASRVLEQLQRDYERSLSRLTLDDIERLASRFL 143

The following BLAST results are available for this feature:

BLAST of TCONS_00066240-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00066240-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
UBL4A	1.412e-23	36.30	Ubiquitin-like protein 4A OS=Homo sapiens GN=UBL4A...	[more]

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TCONS_00066240-protein (polypeptide) - C. hemisphaerica

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