TCONS_00066240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066240
Unique NameTCONS_00066240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066240 ID=TCONS_00066240|Name=TCONS_00066240|organism=Clytia hemisphaerica|type=transcript|length=1351bp
CACTATTTCTCTATCAGAACTGAGGAAGTTGAAGCTTGAAGAAGAAAGAT
TTTACTAGctaaagtatttttttcatattgcatTAAAATACCAGaatgaa
actttttttaaaagtattGGGTGGTCAAGAACTAACTTATACTtacgATG
ACAGTACAACCACGGTAAACGAAGTAAAGAAATTCCTTGTAACCAAATTG
AATAAACCTCTCTCTCAAATCAAACTGGTCTACAAAGGAAAGACTTTAGC
AGCTGAGAAAAGACTTTCTGATTACAATATACAAGATCAGGCTAAGCTAC
ACGTAGCAGTCAAGAAAACACTGATCAGTTCATCTCTAAAGGAAGAACAA
GTCACTCCCACGAAACCAAAATACAAACCAGAAGAATTGTGGTCTAAACT
TTCAGAGGTTCTTGCAAAGAATTATGGTCCAGATGAATCAGCAGTCATTA
TGATGCAATTTCGAAAGGATTATGAGTGTATGTTGAAAACATTGAGTCTG
GATGATATTGAAAGGATAGCAGAAAAGAATCTAACAACTTGATCAACTGG
ACATCTGTCAAGAATGAGAGTAGTTGTTGTGTTGTGGATATGCTGCCGGC
TTCTCATTGGAGAAAGAACAACCAGACACcccttgtgtcacagacccggt
gggactccacacccactggaaaatttgactgaaattttgtcCCTGGTGGA
AagaatatcctacaatttcagcccactggaaaatttaccttttttcaTCC
CAATcttaaattaaaaatgatactcGTAAACCATCCCAACTGGCTgtttt
ttctatccccattggaatttgatagaaaattacatccccactgtgggaag
aagttacacaggggctgtgagacaggggtgtaaccAAGGCTAGCCATGCC
ACATATAGGCCAGGCTATTTCAGTGAATGATTATATACCAGAATCATGCT
AAGGAGATTGTATTTCTGTCTACTACAAGGTGATCCTTAAATGCCTTGAA
GACTTAGAGCATTAAATTTGATCCCGGGAGAGTTGAACTCCTCAATATAG
GATGTAACatcctttttttttgaaatagtcCACTTCCTGAGCCTTCAGGA
GAGTGAGTTTGAAAGTCAAGTTCTTTTAAAGCTGTTATATTAGCATGAGC
AAAGGGAAACTCTGACCCAAGTTATTTGAAGATAAATATTTGAAAGATCT
ATTGGGCTgtttcattaaatttccatacagacAGGGggttggacgaacct
tttcaagtcaataaaacaggataccccctggaaaatgaaaaaattttcga
aaaaccctTAGAACAATTTCCTTTCGAACTAAAATTTGTCTTTTACTcgc
t
Run BLAST on NCBI

protein sequence of TCONS_00066240-protein

>TCONS_00066240-protein ID=TCONS_00066240-protein|Name=TCONS_00066240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MKLFLKVLGGQELTYTYDDSTTTVNEVKKFLVTKLNKPLSQIKLVYKGKT
LAAEKRLSDYNIQDQAKLHVAVKKTLISSSLKEEQVTPTKPKYKPEELWS
KLSEVLAKNYGPDESAVIMMQFRKDYECMLKTLSLDDIERIAEKNLTT
Run BLAST on NCBI

transcript from alignment at scaffold_451:792514..800474-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066240 ID=TCONS_00066240|Name=TCONS_00066240|organism=Clytia hemisphaerica|type=transcript|length=7961bp|location=Sequence derived from alignment at scaffold_451:792514..800474- (Clytia hemisphaerica)
CACTATTTCTCTATCAGAACTGAGGAAGTTGAAGCTTGAAGAAGAAAGAT
TTTACTAGCTAAAGTATTTTTTTCATATTGCATTAAAATACCAGAATGAA
ACTTTTTTTAAAAGTATTGGGTGGTCAAGAACTAACTTATACTGTAAGTA
TATTACTAGACCATCCCAGAAAATTTTTGTTATATATATACCCCCTGCAT
TTTTTAATTTTATCCAAACGGTGTCAATCAACAACTTCAAACAAAAATCA
CAATAGACCTCTTTTTAAGGAATGAGGCCACCCTGTTGAATAATTATGTA
GTCCAGCAAAAAAAATAATGATATAGCCAAGCATAATTATTATAATATGC
ATGAAACAGTAATTATGCATGGCTGTGTATTTTATGCTGGACTACATAAT
TATATTCAACAGGGTTGCCTAGCCTCTTTAAAAAAAGGTCTATCGAGAAC
CAATCGAATGTAGCTAATCGAATGAGACCAAATAACTGCGATTCGATTAT
CAAATGCAATCGAATCTCAATCCATCGGCCGATTCTTGGGTAATATTCGA
TTGTGTTTGATTGCGTTTGAGTAACGTTCGATTGGGTTCGATTGATCGTA
AATTACCTTCGATTGATCTTCAATTATGTTTGATTACCATTATGTTCGAT
AAGTTTGATTGCGATTAGATCAAATTTGATCATTCCTTTAGAGCTTTTTC
AGCGTGGACGACCGAATCATAACTTCTTTTCTTCTTGATAAATTTTTGTG
AAATATTCAGGAGAGATCCATAAAATTATCATTGATACCATGTTCAAATA
TCTAAATCATTCTCTTTAAAGGAAAGAAAACAATTGACAATGTTTACATT
CCTCTAACCTTCCACAGTACTAAAGTGCCCATTTTTACCTACTGTTTTCA
CGGTGGAACACAGTGGAGATAGCGAGACTTCTAAATGGTGTATTGATTCC
GCATTTGATTTGTTCAATTGACACTGTCTGGTCGAACCGATCAAATGTGG
CTAATCGAACACGATCAAATAAAATTATTATCAAACGCAATCAAATCTTA
ATCGATTGGCAGATTCCTGGGTAATATTCAATTTGTGTTCAATTGAGTTC
GAATTACATTTGATTGAGTTCGAATTACATTTGATTGAGTTCGAATTACG
TTTGATTGTGATTCCTTAATGTTCAATTAGTTTTGACAGCTGAAAATATT
CTTAAAAATTATTAAACAAGGGGGTCCTAATAAGGTCCCAGGGGGTTGGA
AAATTTTCAAAAAATTAACAAGAGGGGGGGCATTTACTTGGAACCTAAGA
GTAAATCTTCCTCTAGAGCTTCATAGCTTAAGCGTGGGGTGACCGGGCGA
GCACTAAAATATGCCGTTGGAAAATCAGATAATGGTGCAAGCGAATGCAA
TTGAATCAATCGAAACGTAATTGTGCATAATTGAATACAATTGAACGTAA
TGGAACAGCAAATCCTGGGTAATATTCTATTACAATTCGATTGCGATCGC
ATTCAATTGAATAAATGTTTGACTTGTCAGATTGACACCGATTACAGGAC
TAATCAAACTTTGTCATGAGAACTTAATCGAACAATAAAAGTTTGATTAA
ATTATTTATATATATAATCGAACTTTGACTTTTTGAACTTTTGGTGAACT
TATAGTATTTGGGTAAAATGAACATTTCTCATCAACTCAACCGTCAACTT
TTTTTTAAATCTGAAAATCCTGTGATGCGAGGGATGTTTTAAATGACATC
ACTGCAAAAGAGACCATGACTATTGAACTTTCACTGTTAGAGCGCACTTT
CTGATTTTTGTGTTCTATCAACATGGCCGAATTAGAGAGCTCCCATATTA
TCAAACTGATCGAACCCCAACTAGTGATCAAATCCTGAAATTTAAATCCA
ACAATCACAGTAGTTGGCTCTGGATGGCTCCCGGTTTCTATGGTCCAATA
ACGAATAAAATGAGAAAGTCATGGTCAAAATTTAGAATGGAGAAGCACAC
TTTATTTTTTTATGGTCGTTTTATGGAATGACGTTTTCCTTACTTTATTT
AAATCTTCCTTCACTATTCAAGGTTTGCTGGCAAAAATAATGGCATCCTA
TATATATAGCTGCAGTCTTGAGGTTTGAAGATGACAAAAAAATTATTTTG
TTTTAAAAATTTACTGCACCTGCATAGCTAATCTTGATCACAGATCAGAT
CAAAGGTTCAATAACTTTACCAGCTCACACGATTCCTTTGAATCAAGCTA
ATCGAATTTAATGAAACTTAAAGCAGCTTGTATGTACAGCTAATCAAGTC
CCATTCTGGTTGAAATTGTGTTAGTACAATAGTTTAATTAGGCAAACCTT
GAAGAATCTAGAAATTACTGATGATAATTATCTAGCAGGGGTCAAAATAT
CTTAAAGGAAAACAAAAGTGTTATGTTTTAGTTATAAACTTATCTATTTC
AGCTCCATTGTTTTAGTAAGTGGAATCAGCAAATTAACAACATCAAATGG
ATAATTTATAATTTGATTGATTTAACAAGATTTCATTGAGGGCTTTTCCA
GAAAAAATTTGTACCCCCTTTGTTAAGGTCTTTTTTTAAAAAGGTGACCC
CCTGGATTTTTTTCCAATTTTTCAGAACCCCCTTGGATTTTTTTCTCCCA
TTCTTTTGGACCACCCTGGATTTTCGACCTCGTGATACTGACAACCCTGG
ATTTTCAACCCGATTTTACTGACCAACCTGGATTTTTTCATTCAAAAACC
CAGACCACCCTGGATTTTTTATTTTCCAGACCACCTTGGACGTCACACCT
CCTCAACATAGGGGGTACAGACTATTTCTGAAATAGCCCAATAGTAATTC
GTTTGTATTTAGAAGCTCTTTTTTTTTTTAAAGTACGATGACAGTACAAC
CACGGTAAACGAAGTAAAGAAATTCCTTGTAACCAAATTGAATAAACCTC
TCTCTCAAATCAAACTGGTCTACAAAGGAAAGACTTTAGCAGGTAAACTA
CATGTTTTTTTATAAAAACATGGTTTCCTCCAGGTTTTCAGGTTCTTCCC
ATCTGGGGCCTAAAACCCCCATTTGGTCTTCTTCCCCCACCTACCCTCCC
CCCATTGGAAAAATATTTTTGTGACCTAACGATTTGCCAGATTTTGCATA
AAAACTTAATAAAAATAAGAATTTCCTGCAATGAACATACAAATGCTGGA
AATAGACACATTTAATCATCTATTTGAAATATTATATCTAATTTCTGCAG
TTTCCACAATGCTCACAGAATGGTGAAAATAAGAAAATTTCTAGGACTAC
ATAAAAATTAAGAACAATGGAAGGCTTGAAAATTTTTATAATGAAATAAT
GTGCACAATTTAGTAAAATGTAATGAATGGCGACCATATTTTATAAAACT
GCACTTTTAGGGCAATACAGTAGCATCAAACATTCAACAATTCTTGTAAA
CATAAAAACAGAAAATATCGTTAACAGAGGTTCTGCTTTGTTTTTGTTTT
TGTTTTTGCCAGCCTGGTAGATTTAAGTTGACTCTAGATTCTAGGTCAGT
GGATTGTTAGCAATCCCCGTGTATTGATTAGCATGAATAGACTGGCAAAA
TTTGCCGTTTGCAGGGGCTAAATAAGAGCCCCCTTTAAAGTGTTTCAGAT
TTTCATTCAAGATTCATGTGAAGGGGGCAACTGTTACCCTATGATAGCAT
GTAGTAACTACCTTTTTGATGAAATGAAGAGGGATGGGTGTACCTTATCG
GGGAAAACTTCGTTGGGGAAAAGTGACGAAATTTTCGACAAGTGACGAAT
ATTTTTCCCTGATGAAAATTTTCCCAGGCTTTAATGCGTTTACCAACTAC
CAGCAAGTGACGAATTTTTCCCCGACGAAAATTTTCACCGACGAAAATTT
TCCCCGACGAAGTTTTCCCCGATAAGGTATTCATTTTCTGAAAACTTTAT
CAAGAATAACATTATCAAAAGTATCTCAAAATGATTTTGAAATAATTATT
ATTATTAAAGGATATACAGTCCAGGCACACTATGCTAGGGCCTCTAAACC
TGTCTATCTACATAATATTTACAAAAGTGATCTTGAATCGTAACGTAACG
GATGCTTTACCCATGCCTGATCTTTTTGCCAAAACCTATTTTTGAAAAGG
ATTTTCATGGCTATATGACGTGCTGTTATTCTTTCAGCTGAGAAAAGACT
TTCTGATTACAATATACAAGATCAGGCTAAGCTACACGTAGCAGTCAAGA
AAACACTGATCAGTTCATCTCTAAAGGAAGAACAAGTCACTCCCACGAAA
CCAAAATACAAACCAGAAGAATTGTGGTCTAAACTTTCAGAGGTTCTTGC
AAAGAATTATGGTCCAGATGAATCAGCAGTCATTATGATGCAATTTCGAA
AGGTTTGATATGGTTTGAAGCTCTACTAGTCATGTATTACAAAGTGTGAT
ACTTTTGGGGTAAAGTACGTTGGGAAAATTGAGGGATATACTCTCGGGTA
CCTAATAGCTGGAGGGCCCGCTTATTAATTTTTCAAAAATTTTCCATCCA
GGACATTCTTATTCCAAACCCCCCCCCCCCGGCTTATTGATTTTTGGGAA
AATTTTTTTGAAAGTTTCCTCTTTTGCCCTAATTCTGCTGTAATAGCCTC
CTTTTCGAAAATTGTCCACCCAGGACATTTTTATTCCAACCCCCCCCCCC
CCCGGCTTATTGATTTTTGGGAAAATTTTTTTGAAAGTTTCCTCTTTTGC
CCTAATTCTGCTGTATTAGCCTCCTTTTCGAAAATTGTCCACCCAGGACA
TTTTTATTCCAACCCCCCTGCTTTGCTTATTAAGTTTTGAGATTTTTTCC
AAACCCCCGGCTATTAGGTACCCAAGAGTATATAGTGGTAGAGATTTTGA
TGAGCAAATATTCTCCAGATGAATCAACTCCAACATTTAACTTTCTTGAT
ATGTATGATGACACAATTCAAAAAAATTGTTTTTGATCCGAACCATTGAA
ATAATTTCAGTGAAATTTTAAGGCTAAAGAGTTAGATGGAGGGGAGTAAA
GTGAAATTTACTTATTTTCAAGTTTTTGTAAGGAAATAAATTAGATATTT
TCTGCCTATTTTAAGGTATGTGTTCACCTTTCTTGACACATTCTCTTTAA
TTGATCATATCTTTAGAACAACAAATTTTTATATATCAAAAGTATATATT
TTCTGAAAGCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATAT
TCTCTTTCTAATGGTAAAAGTTTCAGCTGAATTTAAAAAACTGGGCAGGA
TATAATTAAAATCTTAAGAATTTTAACCTTACCTACTTCAAAGAAGTTTA
AAGTCACCCATAGCTTTTGAATTTTGAAAAAATAATTTCGATTCTAAATT
CTGTAAAAATATCGATAAAAAAGTAAATTTAAATGTGATTTTTTTCAGTT
ATCTGTAAATTGAGGAAAAACAACTCGGTTAGAAATAAAATCCTAAGACA
CTTTTTAAGTTTGATCTTTTGGGAATCTCATAAAAAAAGAATGAAGTCGA
TATCTAAATGCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGTATG
GTGTGGTAAAATTTCGTTTTTTTCTACATCAATTTGAAATTTTTAACGAG
ATGATTGCTGTTTATTTGAGTAATCAGTGAAATGTGTCAAAAATTTTACT
ATTCAATAGAGGTGAGAATAAACATCAGCTGAATTCTCTCTTTTGTCTTT
GTTGTTTCCGAAAGGGACAATTATTTGAGTAAATAATCCATCATAAGACG
AACTTTGTTTTGAAATTTAAATGGTTATAACTCTGGAACAAAAAAAGATT
TTAAGATCGCGATTTTACCAAAACGAAATCCAGTAACTTTTCTTCCACTT
TGACTAAAAAAATTTTTTTGACAAAAAATCGGAAAAAGGTGTACACATAC
ATACCTTAAACTTTCCTTTTTATACAAGACAGTATGACACTTACTACCGT
GTTGGTATTGTATTCAGAAGTTATGAAAACAGTTACTACACAGTGTAGTA
ACTGCTGTTTGGGGGTGGTGCCAAACACTAAAACGAATTTTAAAGAACTT
TCAAAAATTTTCAAAAAAAATGAATTTTTTTGTGAAAAAATTCTTTGTTA
AAAAAAATATTTTTGTTATAAATAGACGAAAAAAAATTTGAAATTTTTCT
CATCCAACTTTGAAATTATGCTTTCCCTAATTATCATTAAAATGCTGTAA
AATGTTCTCAACAGCTGTTAACCAAGTTAATTAGAAGAAAATCTAGCACG
AAAATGGCTTTAGGTTGAGAAATAATCGCAATTTAGGGTAATTTCGAGCA
TGTTTTTGATGATATCACTCAAAAACAGGGGTGGTACCTGGAAATCTTTT
CTGAAAACAGTTACTACCAAGGTGTAGTAACTGCAAAGGGTGGTGAAAAA
AGTGTTGAAAAAGCACTTACTACACTACACATCACGTCTTGTAGTAACTG
CGTGTCCCCCCTGTTTTATGTAATATCATTCATAAATTACAATAGTATTA
TTATTAATATTTTCACAATTTTGAATGCTGCAGTAAAAAGATAATGAATC
ATAGATATCTTATATAAAACACTAGATAGAGCTACTCTGTATTTCCAAAG
CAACGGCAAGTGAAGCAAAATAATACGTCATCTTTACTGAAAGTAGGTCA
GTAGGTCACAGTTCAGTACCGGCAATTTGTTCAACCAAGCAAAAAAAACT
GAATGACGCGAAGCGACGAGGCGAAAGGTAGACTTGATCAATCAAATTGT
CGGCACCGAACTATGGTCTATTTATCAAAGATGGCAGATTATTCTGATTC
AAACAGGGACGGAGTAGCTCTGTCTTGTATAAGATATCTGTGTAATGAAT
CTGAAAAATGATTTCTTTTCTTGCCAGGATTATGAGTGTATGTTGAAAAC
ATTGAGTCTGGATGATATTGAAAGGATAGCAGAAAAGAATCTAACAACTT
GATCAACTGGACATCTGTCAAGAATGAGAGTAGTTGTTGTGTTGTGGATA
TGCTGCCGGCTTCTCATTGGAGAAAGAACAACCAGACACCCCTTGTGTCA
CAGACCCGGTGGGACTCCACACCCACTGGAAAATTTGACTGAAATTTTGT
CCCTGGTGGAAAGAATATCCTACAATTTCAGCCCACTGGAAAATTTACCT
TTTTTCATCCCAATCTTAAATTAAAAATGATACTCGTAAACCATCCCAAC
TGGCTGTTTTTTCTATCCCCATTGGAATTTGATAGAAAATTACATCCCCA
CTGTGGGAAGAAGTTACACAGGGGCTGTGAGACAGGGGTGTAACCAAGGC
TAGCCATGCCACATATAGGCCAGGCTATTTCAGTGAATGATTATATACCA
GAATCATGCTAAGGAGATTGTATTTCTGTCTACTACAAGGTGATCCTTAA
ATGCCTTGAAGACTTAGAGCATTAAATTTGATCCCGGGAGAGTTGAACTC
CTCAATATAGGATGTAACATCCTTTTTTTTTGAAATAGTCCACTTCCTGA
GCCTTCAGGAGAGTGAGTTTGAAAGTCAAGTTCTTTTAAAGCTGTTATAT
TAGCATGAGCAAAGGGAAACTCTGACCCAAGTTATTTGAAGATAAATATT
TGAAAGATCTATTGGGCTGTTTCATTAAATTTCCATACAGACAGGGGGTT
GGACGAACCTTTTCAAGTCAATAAAACAGGATACCCCCTGGAAAATGAAA
AAATTTTCGAAAAACCCTTAGAACAATTTCCTTTCGAACTAAAATTTGTC
TTTTACTCGCT

Coding sequence (CDS) from alignment at scaffold_451:792514..800474-

>TCONS_00066240 ID=TCONS_00066240|Name=TCONS_00066240|organism=Clytia hemisphaerica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_451:792514..800474- (Clytia hemisphaerica)
GATTATGAGTGTATGTTGAAAACATTGAGTCTGGATGATATTGAAAGGAT
AGCAGAAAAGAATCTAACAACTTGACTGAGAAAAGACTTTCTGATTACAA
TATACAAGATCAGGCTAAGCTACACGTAGCAGTCAAGAAAACACTGATCA
GTTCATCTCTAAAGGAAGAACAAGTCACTCCCACGAAACCAAAATACAAA
CCAGAAGAATTGTGGTCTAAACTTTCAGAGGTTCTTGCAAAGAATTATGG
TCCAGATGAATCAGCAGTCATTATGATGCAATTTCGAAAGTACGATGACA
GTACAACCACGGTAAACGAAGTAAAGAAATTCCTTGTAACCAAATTGAAT
AAACCTCTCTCTCAAATCAAACTGGTCTACAAAGGAAAGACTTTAGCAGA
TGAAACTTTTTTTAAAAGTATTGGGTGGTCAAGAACTAACTTATACTGAT
TATGAGTGTATGTTGAAAACATTGAGTCTGGATGATATTGAAAGGATAGC
AGAAAAGAATCTAACAACTTGACTGAGAAAAGACTTTCTGATTACAATAT
ACAAGATCAGGCTAAGCTACACGTAGCAGTCAAGAAAACACTGATCAGTT
CATCTCTAAAGGAAGAACAAGTCACTCCCACGAAACCAAAATACAAACCA
GAAGAATTGTGGTCTAAACTTTCAGAGGTTCTTGCAAAGAATTATGGTCC
AGATGAATCAGCAGTCATTATGATGCAATTTCGAAAGTACGATGACAGTA
CAACCACGGTAAACGAAGTAAAGAAATTCCTTGTAACCAAATTGAATAAA
CCTCTCTCTCAAATCAAACTGGTCTACAAAGGAAAGACTTTAGCAGATGA
AACTTTTTTTAAAAGTATTGGGTGGTCAAGAACTAACTTATACTGATTAT
GAGTGTATGTTGAAAACATTGAGTCTGGATGATATTGAAAGGATAGCAGA
AAAGAATCTAACAACTTGACTGAGAAAAGACTTTCTGATTACAATATACA
AGATCAGGCTAAGCTACACGTAGCAGTCAAGAAAACACTGATCAGTTCAT
CTCTAAAGGAAGAACAAGTCACTCCCACGAAACCAAAATACAAACCAGAA
GAATTGTGGTCTAAACTTTCAGAGGTTCTTGCAAAGAATTATGGTCCAGA
TGAATCAGCAGTCATTATGATGCAATTTCGAAAGTACGATGACAGTACAA
CCACGGTAAACGAAGTAAAGAAATTCCTTGTAACCAAATTGAATAAACCT
CTCTCTCAAATCAAACTGGTCTACAAAGGAAAGACTTTAGCAGATGAAAC
TTTTTTTAAAAGTATTGGGTGGTCAAGAACTAACTTATACTGATTATGAG
TGTATGTTGAAAACATTGAGTCTGGATGATATTGAAAGGATAGCAGAAAA
GAATCTAACAACTTGACTGAGAAAAGACTTTCTGATTACAATATACAAGA
TCAGGCTAAGCTACACGTAGCAGTCAAGAAAACACTGATCAGTTCATCTC
TAAAGGAAGAACAAGTCACTCCCACGAAACCAAAATACAAACCAGAAGAA
TTGTGGTCTAAACTTTCAGAGGTTCTTGCAAAGAATTATGGTCCAGATGA
ATCAGCAGTCATTATGATGCAATTTCGAAAGTACGATGACAGTACAACCA
CGGTAAACGAAGTAAAGAAATTCCTTGTAACCAAATTGAATAAACCTCTC
TCTCAAATCAAACTGGTCTACAAAGGAAAGACTTTAGCAGATGAAACTTT
TTTTAAAAGTATTGGGTGGTCAAGAACTAACTTATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041453XLOC_041453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066240-exon-scaffold_451-1575043694:800332..800474TCONS_00066240-exon-scaffold_451-1575043694:800332..800474Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1575043694:797483..797591TCONS_00066240-exon-scaffold_451-1575043694:797483..797591Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1575043694:796073..796287TCONS_00066240-exon-scaffold_451-1575043694:796073..796287Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1575043694:792514..793397TCONS_00066240-exon-scaffold_451-1575043694:792514..793397Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1510915933:800332..800474TCONS_00066240-exon-scaffold_451-1510915933:800332..800474Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1510915933:797483..797591TCONS_00066240-exon-scaffold_451-1510915933:797483..797591Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1510915933:796073..796287TCONS_00066240-exon-scaffold_451-1510915933:796073..796287Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1510915933:792514..793397TCONS_00066240-exon-scaffold_451-1510915933:792514..793397Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1491911889:800332..800474TCONS_00066240-exon-scaffold_451-1491911889:800332..800474Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1491911889:797483..797591TCONS_00066240-exon-scaffold_451-1491911889:797483..797591Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1491911889:796073..796287TCONS_00066240-exon-scaffold_451-1491911889:796073..796287Clytia hemisphaericaexon
TCONS_00066240-exon-scaffold_451-1491911889:792514..793397TCONS_00066240-exon-scaffold_451-1491911889:792514..793397Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066240-proteinTCONS_00066240-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_451supercontigscaffold_451:792514..800474 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4694	10.0881	6.75358	6.15995	22.3718	17.9102	18.2529	21.0143	14.2414	15.7271	11.3937	10.1588	10.31	9.76289	9.4553	9.99554	14.9024	15.0354	7.03415	8.77759	11.7143	10.5047	12.5026	11.1076	11.1071	12.8301	12.822	10.9108	14.1373	14.1929
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00066240 vs. Swiss-Prot (Human)
Match: UBL4A (Ubiquitin-like protein 4A OS=Homo sapiens GN=UBL4A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.666e-21
Identity = 53/146 (36.30%), Postives = 88/146 (60.27%), Query Frame = 3 
Query:   96 MKLFLKVLGGQELTYTYDDSTTTVNEVKKFLVTKLNKPLSQIKLVYKGKTLAAEKRLSDYNIQDQAKLHVAVKKTLISSSLKEEQVTPTKPKYKPEELWSKLSEVLAKNYGPDESAVIMMQFRKDYECMLKTLSLDDIERIAEKNL 533
            M+L +K L G+E +    +    V+ +K+ +  KLN P+ Q +L++KGK LA  KRLSDY+I   +KL++ VK   +   L EE          P ++W  +S+VLA+++   +++ ++ Q ++DYE  L  L+LDDIER+A + L
Sbjct:    1 MQLTVKALQGRECSLQVPEDEL-VSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP--LEKVLLEEGEAQRLADSPPPQVWQLISKVLARHFSAADASRVLEQLQRDYERSLSRLTLDDIERLASRFL 143
The following BLAST results are available for this feature:
BLAST of TCONS_00066240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBL4A8.666e-2136.30Ubiquitin-like protein 4A OS=Homo sapiens GN=UBL4A... [more]
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