TCONS_00002787 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002787
Unique NameTCONS_00002787
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002787 ID=TCONS_00002787|Name=TCONS_00002787|organism=Clytia hemisphaerica|type=transcript|length=308bp
AAGATGGATGAACCATACTTGGAAATCGACCTTGCGTATGACGATGAACA
ACATTTTGCACCACCAATTAAAATCAGATGGATTGCCAGAAACAAAAACC
GTCTGACTGAAGGCAAATGGATTTTCATCAGGTGCTGTGGACAGATTGGC
CATAAAGAAGGCGATGTGATCACAAGCCGACACCCTTGTAAAAGTCTATC
CTCCACTATtaaagcatagtataagaaagccgcggctggaatgataacat
ctgaatttctgttattctatctctgtcgtatttgatgactatttgttgat
caagaaat
Run BLAST on NCBI

transcript from alignment at sc0000021:1018005..1018312

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002787 ID=TCONS_00002787|Name=TCONS_00002787|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0000021:1018005..1018312 (Clytia hemisphaerica)
atttcttgatcaacaaatagtcatcaaatacgacagagatagaataacag
aaattcagatgttatcattccagccgcggctttcttatactatgctttaA
TAGTGGAGGATAGACTTTTACAAGGGTGTCGGCTTGTGATCACATCGCCT
TCTTTATGGCCAATCTGTCCACAGCACCTGATGAAAATCCATTTGCCTTC
AGTCAGACGGTTTTTGTTTCTGGCAATCCATCTGATTTTAATTGGTGGTG
CAAAATGTTGTTCATCGTCATACGCAAGGTCGATTTCCAAGTATGGTTCA
TCCATCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001515XLOC_001515Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002787-exon-sc0000021-1491911889:1018005..1018312TCONS_00002787-exon-sc0000021-1491911889:1018005..1018312Clytia hemisphaericaexon
TCONS_00002787-exon-sc0000021-1510915933:1018005..1018312TCONS_00002787-exon-sc0000021-1510915933:1018005..1018312Clytia hemisphaericaexon
TCONS_00002787-exon-sc0000021-1575043694:1018005..1018312TCONS_00002787-exon-sc0000021-1575043694:1018005..1018312Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:1018005..1018312 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.446306	1.36097	0	0	0.38809	0	0	0.758803	0.668744	0	1.33816	0	2.25204	1.61858	2.12744	2.59696	2.11437	4.17591	1.79519	2.3483	1.37181	1.61139	1.73652	2.30727	2.05918	6.32056	3.83378	0	1.88917
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002787 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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