TCONS_00062891-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062891-protein
Unique Name	TCONS_00062891-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	542

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062891-protein ID=TCONS_00062891-protein|Name=TCONS_00062891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=542bp
MGEEKGGRCCRCCTTVVTISILIVVSVLFICLGAGSIPFLTNFYKDTVLK
QLVMKYSDSSGGNEAYKNWNSPPAPVYMQFYMFNYTNVDEIINEKAKPNV
TQLGPYSYREVRENVILHQNENEITYLQNYSYVFDPATSCANCSENDTII
TPNLAVITFQTKLKDLNITPQSGFVKRWAIEALDKLLNNDKTYKMFIPLP
VHELLWGYTSPFLDHLEGLIPKVIRNLIPNLPPPFIALQQNGTAGAVAVG
NITILTGNEDINKVQITTKWRGKNSTGSWNGDKFTNFWQTPYGNMINGTD
GSHFQPYISKDDVIYIFNPQLCRSLYLNYQRDTSIMDIKLLRYTTRAKIF
QNYTANPDNKAFCGPKRCYPSGLLPVGQCQPGNPPVFMSSPHFYQGYPAL
WQSFNGLHPETDLHETYLSIEPTTGIVMDAHKRLQINVNIQKVPYISRTD
VFPEQDNFYPVLFVHEYATIDKASADRFKKEVMLPKQMITIMEYGLIGLG
GLFLIIALVLGARHQRKKNQQSVYTEFSNEDNEKNIQQKKGH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039392	XLOC_039392	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062891	TCONS_00062891	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002159	CD36_fam

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002159	CD36 family	PRINTS	PR01609	CD36FAMILY	coord: 123..142 score: 24.48 coord: 97..109 score: 51.72 coord: 293..317 score: 39.17 coord: 368..392 score: 22.9 coord: 71..92 score: 38.56 coord: 416..437 score: 43.26
IPR002159	CD36 family	PFAM	PF01130	CD36	coord: 25..510 e-value: 2.7E-129 score: 431.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 523..542

Blast

[Close]

BLAST of TCONS_00062891-protein vs. Swiss-Prot (Human)
Match: SCRB2 (Lysosome membrane protein 2 OS=Homo sapiens GN=SCARB2 PE=1 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.224e-72
Identity = 161/482 (33.40%), Postives = 240/482 (49.79%), Query Frame = 0

Query:   47 TVLKQLVMKYSDSSGGNEAYKNWNSPPAPVYMQFYMFNYTNVDEIINEKAKPNVTQLGPYSYREVR--ENVILHQNENEITYLQNYSYVFDPATSCANCSENDTIITPNLAVITFQTKLKDLNITPQSGFVKRWAIEALDKLLNNDKTYKMFIPLPVHELLWGYTSPFLDHLEGLIPKVIRNLIPNLPPPF-IALQQNGTAGAVAVGNITILTGNEDINKVQITTKWRGKNSTGSWNGDKFTNFWQTPYGNMINGTDGSHFQPYISKDDVIYIFNPQLCRSLYLNYQRDTSIMDIKLLRYTTRAKIFQNYTANPDNKAFCGPK-RCYPSGLLPVGQCQPGNPPVFMSSPHFYQGYPALWQSFNGLHPETDLHETYLSIEPTTGIVMDAHKRLQINVNIQKVPYISRTDVFPEQDNF----YPVLFVHEYATIDKASADRFKKEVMLPKQMITIMEYGLIGLGGLFLIIALVLGARHQRKKNQ 520
            ++ K++V++      G EA+ +W  PP PVY QFY FN TN +EI+  +  P V ++GPY+YRE+R   N+    N   I+ + N +YVF+   S  +  + D I T N+ V+T         I        R  IEA+ K        K+F+   V ELLWGY    L         +I    P++ P F +  ++NGT      G+   LTG +         +W GK S   W  DK          NMINGTDG  F P I+KD+V+Y+F    CRS+Y+ +    S+  +   RY   A+I  N +   DN  FC P+  C  SG+L V  C+ G  P+ MS PHFYQ       +  G+HP  + HET++ I P TGI++ A KR QIN+      Y+ + D F E  +     +PV++++E   IDK +A R K  ++    +IT + Y ++ LG  F ++   L  + Q   ++
Sbjct:   36 SIEKKIVLR-----NGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGET-PRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQSVGD-PKIDLIRTLNIPVLTV--------IEWSQVHFLREIIEAMLKAYQQ----KLFVTHTVDELLWGYKDEIL--------SLIHVFRPDISPYFGLFYEKNGTND----GDYVFLTGEDSYLNFTKIVEWNGKTSLDWWITDK---------CNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNG-APIIMSFPHFYQADERFVSAIEGMHPNQEDHETFVDINPLTGIILKAAKRFQINI------YVKKLDDFVETGDIRTMVFPVMYLNESVHIDKETASRLKS-MINTTLIITNIPYIIMALGVFFGLVFTWLACKGQGSMDE 466

The following BLAST results are available for this feature:

BLAST of TCONS_00062891-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062891-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SCRB2	2.224e-72	33.40	Lysosome membrane protein 2 OS=Homo sapiens GN=SCA...	[more]

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TCONS_00062891-protein (polypeptide) - C. hemisphaerica