TCONS_00062555-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062555-protein
Unique NameTCONS_00062555-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length716

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062555-protein ID=TCONS_00062555-protein|Name=TCONS_00062555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=716bp
SLVLGYICRRKNFIQNMIKQARITTFVFTLVLTHHHGNCNTVDTLSSILK
VTQNELFNNGKGNIAEFSLKNELLGSSKQTANISCHSPANQTIEDSSISD
SIEMCHFASMLHCITSHFLTGRVFFYFDDRFKYNFTRNYIGNMSQVERQR
FHAFHFETKDRILDTLRGFVITVLQSNVDVVAVFLNEDIFRMLMDVWIRE
GYEQVMSWLYIDGNRKIHYYAPKCEYFQEPMERPLQTIDAITTENTCNSE
AFKTLQRGVKRCNRRHNHPLIRVAVKVEAPWVVETQGNYVNGEIYCERAV
VCNMPKHTDNGEIVWERKCCTGSMIEIFLEVIKFAHIQKYMVYGVPDGRY
GGIVSCPNNNFTDATKCQWDGLFNELLQGRADIAATSLTWTSARQAVADI
PEYIDLSPLSIVMNREIRNKPIITWSYVKMVDSSLALTLLLTYFVLYIAV
LIIEHASNIGNRRSFYTLHEILTYLGGLTFQRDLGGRNPFFWPSRVPSLM
YAFATTIIMTTYTADLTAKGVVVEESNFKGMKDSRIVNPSNDFIFSVPVA
TYTSYYFEVNVDERYRKSYEFMKPYQSNIDLDGVEKVYKQEIDAYISDSE
SLTAVVNLAKYCSALVMEPLDITALPYSFALQKNSKFTPFFSKHIFNMKF
EGTIKAIRKKWYYRSDRCAGADAKAEQFDWKYAISLEVLLFGATCVCVFI
LIFENVFARLHWKRQT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039191XLOC_039191Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062555TCONS_00062555Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001320Iontro_rcpt
IPR001638Solute-binding_3/MltF_N
Vocabulary: Molecular Function
TermDefinition
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
ZOOM
x 1
POSITION
0
100200300400500600700Expect = 2.9E-4 / Score = -46.5Score = Score = Expect = 8.1E-12 / Score = 44.9SequenceSM00079G3DSA:3.40.190.10SSF53850PF00497
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 298..664
e-value: 2.9E-4
score: -46.5
NoneNo IPR availableGENE3D3.40.190.10coord: 266..446
e-value: 5.8E-13
score: 48.1
coord: 513..669
e-value: 1.7E-7
score: 30.3
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 271..416
coord: 526..665
IPR001638Solute-binding protein family 3/N-terminal domain of MltFPFAMPF00497SBP_bac_3coord: 368..662
e-value: 8.1E-12
score: 44.9

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062555-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700Expect = 1.21e-21 / Id = 22.09SequenceNMDZ1
Match NameE-valueIdentityDescription
NMDZ11.214e-2122.09Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
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