TCONS_00062089-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062089-protein
Unique NameTCONS_00062089-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length181

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062089-protein ID=TCONS_00062089-protein|Name=TCONS_00062089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MFDNEIEEPKAQRAIANIRERQRTQALNQAFNSLRKIIPTLPSDKLSKIQ
TLKLAVMYIEFLSKVLECDEQNTSNQQIDFMLAQEKISYAFSVWRMEGDF
YAANGGFGAAAHNKTGHYFTEHELNSCKYEFNPNFGNQLLYKPLTLKNSE
SERSVIKEEENERNKDDVMNIENLTAQQRYG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038912XLOC_038912Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062089TCONS_00062089Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 157..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..181
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 17..68
e-value: 3.6E-15
score: 66.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3D4.10.280.10coord: 2..68
e-value: 1.1E-16
score: 60.0
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 12..62
e-value: 5.7E-17
score: 61.3
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 11..62
score: 15.878
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 9..67
e-value: 1.52648E-12
score: 58.3795
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 10..77

Blast
[Close]
BLAST of TCONS_00062089-protein vs. Swiss-Prot (Human)
Match: TWST2 (Twist-related protein 2 OS=Homo sapiens GN=TWIST2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.330e-37
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 0 
Query:    6 IEEPKAQRAIANIRERQRTQALNQAFNSLRKIIPTLPSDKLSKIQTLKLAVMYIEFLSKVLECDEQNTSNQQIDFMLAQEKISYAFSVWRMEGDF 100
             EE ++QR +AN+RERQRTQ+LN+AF +LRKIIPTLPSDKLSKIQTLKLA  YI+FL +VL+ DE +       + +A E++SYAFSVWRMEG +
Sbjct:   61 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSY-VAHERLSYAFSVWRMEGAW 154
The following BLAST results are available for this feature:
BLAST of TCONS_00062089-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TWST25.330e-3763.16Twist-related protein 2 OS=Homo sapiens GN=TWIST2 ... [more]
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