TCONS_00062089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062089
Unique NameTCONS_00062089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1072

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062089 ID=TCONS_00062089|Name=TCONS_00062089|organism=Clytia hemisphaerica|type=transcript|length=1072bp
TCAGAGTCTCATCTAAGGACTTTTTCTTACACTAAAACGTGCCTAGAAGA
CATCAAGATATCAAGATATTTCTCATATATTTATCATATATGTACAACAT
TTACAAAATAGCACTTTCATTGCTTATGCTTTTGAAAGGCTCAACCATAT
CTTTGTTGAGCcgtcaaattttcaatgttcatgacgtcatctttatttct
ttcattttcctcttCTTTGATTACTGATCTTTCACTTTCACTGTTTTTCA
ACGTCAAAGGTTTGTACAAAAGCTGGTTACCAAAGTTCGGATTGAATTCG
TATTTACAAGAGTTTAGCTCGTGTTCTGTGAAATAATGTCCTGTTTTGTT
ATGGGCGGCGGCCCCAAAACCACCATTAGCTGCATAAAAGTCGCCTTCCA
TTCGCCATACACTAAAGGCGTAACTTATTTTCTCTTGTGCTAGCATGAAA
TCGATTTGCTGATTGGAAGTGTTCTGTTCATCACATTCTAAGACTTTGCT
CAAAAATTCGATATACATGACCGCAAGTTTTAGAGTTTGTATTTTGGAGA
GTTTATCTGAAGGTAGTGTAGGGATGATTTTGCGAAGAGAATTGAAAGCT
TGATTCAACGCTTGAGTTCGTTGTCGCTCGCGGATATTAGCAATCGCGCG
CTGTGCTTTCGGCTCTTCTATTTCATTATCAAACATCAGGTTAGATTGTT
GTGTTTGTCTCCCTTCATCCTGTACACTTCGGTATAGCTGCGTTTGGCTG
GAATGCACATTGTTTTGGTTGCTGAATTATCAAATCCGTCAAAAGGTGTT
TTACGTTTTCGTTGGTTTAGTCCAGTCAAATAATTCCCCATATTTTGATA
TGCTCCAATTCCACCATAACCATTCACTTCTGTAGTATAATGATTTATAA
ACATTATGTTTTCCAATTTAAGTTGGTTACAAAAACAATCCGAACCAGAA
ATTACTAAATTAAACCACCAAAAATTGGCTTGTTAAAGACTCAATATGAG
CAATAAAGATTTAGCGTCTATCTCCAGGCTTTAGTCAGTCTTTCCTTCTT
AGTTCCTTTCTCCGTTCTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00062089-protein

>TCONS_00062089-protein ID=TCONS_00062089-protein|Name=TCONS_00062089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MFDNEIEEPKAQRAIANIRERQRTQALNQAFNSLRKIIPTLPSDKLSKIQ
TLKLAVMYIEFLSKVLECDEQNTSNQQIDFMLAQEKISYAFSVWRMEGDF
YAANGGFGAAAHNKTGHYFTEHELNSCKYEFNPNFGNQLLYKPLTLKNSE
SERSVIKEEENERNKDDVMNIENLTAQQRYG
Run BLAST on NCBI

transcript from alignment at scaffold_361:101770..102841

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062089 ID=TCONS_00062089|Name=TCONS_00062089|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at scaffold_361:101770..102841 (Clytia hemisphaerica)
GTTCAGAACGGAGAAAGGAACTAAGAAGGAAAGACTGACTAAAGCCTGGA
GATAGACGCTAAATCTTTATTGCTCATATTGAGTCTTTAACAAGCCAATT
TTTGGTGGTTTAATTTAGTAATTTCTGGTTCGGATTGTTTTTGTAACCAA
CTTAAATTGGAAAACATAATGTTTATAAATCATTATACTACAGAAGTGAA
TGGTTATGGTGGAATTGGAGCATATCAAAATATGGGGAATTATTTGACTG
GACTAAACCAACGAAAACGTAAAACACCTTTTGACGGATTTGATAATTCA
GCAACCAAAACAATGTGCATTCCAGCCAAACGCAGCTATACCGAAGTGTA
CAGGATGAAGGGAGACAAACACAACAATCTAACCTGATGTTTGATAATGA
AATAGAAGAGCCGAAAGCACAGCGCGCGATTGCTAATATCCGCGAGCGAC
AACGAACTCAAGCGTTGAATCAAGCTTTCAATTCTCTTCGCAAAATCATC
CCTACACTACCTTCAGATAAACTCTCCAAAATACAAACTCTAAAACTTGC
GGTCATGTATATCGAATTTTTGAGCAAAGTCTTAGAATGTGATGAACAGA
ACACTTCCAATCAGCAAATCGATTTCATGCTAGCACAAGAGAAAATAAGT
TACGCCTTTAGTGTATGGCGAATGGAAGGCGACTTTTATGCAGCTAATGG
TGGTTTTGGGGCCGCCGCCCATAACAAAACAGGACATTATTTCACAGAAC
ACGAGCTAAACTCTTGTAAATACGAATTCAATCCGAACTTTGGTAACCAG
CTTTTGTACAAACCTTTGACGTTGAAAAACAGTGAAAGTGAAAGATCAGT
AATCAAAGaagaggaaaatgaaagaaataaagatgacgtcatgaacattg
aaaatttgacgGCTCAACAAAGATATGGTTGAGCCTTTCAAAAGCATAAG
CAATGAAAGTGCTATTTTGTAAATGTTGTACATATATGATAAATATATGA
GAAATATCTTGATATCTTGATGTCTTCTAGGCACGTTTTAGTGTAAGAAA
AAGTCCTTAGATGAGACTCTGA

Coding sequence (CDS) from alignment at scaffold_361:101770..102841

>TCONS_00062089 ID=TCONS_00062089|Name=TCONS_00062089|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_361:101770..102841 (Clytia hemisphaerica)
ATGTTTGATAATGAAATAGAAGAGCCGAAAGCACAGCGCGCGATTGCTAA
TATCCGCGAGCGACAACGAACTCAAGCGTTGAATCAAGCTTTCAATTCTC
TTCGCAAAATCATCCCTACACTACCTTCAGATAAACTCTCCAAAATACAA
ACTCTAAAACTTGCGGTCATGTATATCGAATTTTTGAGCAAAGTCTTAGA
ATGTGATGAACAGAACACTTCCAATCAGCAAATCGATTTCATGCTAGCAC
AAGAGAAAATAAGTTACGCCTTTAGTGTATGGCGAATGGAAGGCGACTTT
TATGCAGCTAATGGTGGTTTTGGGGCCGCCGCCCATAACAAAACAGGACA
TTATTTCACAGAACACGAGCTAAACTCTTGTAAATACGAATTCAATCCGA
ACTTTGGTAACCAGCTTTTGTACAAACCTTTGACGTTGAAAAACAGTGAA
AGTGAAAGATCAGTAATCAAAGaagaggaaaatgaaagaaataaagatga
cgtcatgaacattgaaaatttgacgGCTCAACAAAGATATGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038912XLOC_038912Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062089-proteinTCONS_00062089-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062089-exon-scaffold_361-1491911889:101770..102841TCONS_00062089-exon-scaffold_361-1491911889:101770..102841Clytia hemisphaericaexon
TCONS_00062089-exon-scaffold_361-1510915933:101770..102841TCONS_00062089-exon-scaffold_361-1510915933:101770..102841Clytia hemisphaericaexon
TCONS_00062089-exon-scaffold_361-1575043694:101770..102841TCONS_00062089-exon-scaffold_361-1575043694:101770..102841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:101770..102841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100473	0.0400885	0	0	0.0554388	0	0	0	0	0	0	0	0	0	0	0	13.4405	9.25359	0.0437006	0	10.0342	9.34317	6.47264	8.77024	12.1125	10.0364	0.198029	0.080825	0	0.0464884
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
Blast
[Close]
BLAST of TCONS_00062089 vs. Swiss-Prot (Human)
Match: TWST2 (Twist-related protein 2 OS=Homo sapiens GN=TWIST2 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.400e-34
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = -3 
Query:  387 IEEPKAQRAIANIRERQRTQALNQAFNSLRKIIPTLPSDKLSKIQTLKLAVMYIEFLSKVLECDEQNTSNQQIDFMLAQEKISYAFSVWRMEGDF 671
             EE ++QR +AN+RERQRTQ+LN+AF +LRKIIPTLPSDKLSKIQTLKLA  YI+FL +VL+ DE +       + +A E++SYAFSVWRMEG +
Sbjct:   61 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSY-VAHERLSYAFSVWRMEGAW 154
The following BLAST results are available for this feature:
BLAST of TCONS_00062089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TWST25.400e-3463.16Twist-related protein 2 OS=Homo sapiens GN=TWIST2 ... [more]
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