TCONS_00062028-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062028-protein
Unique NameTCONS_00062028-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1169

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062028-protein ID=TCONS_00062028-protein|Name=TCONS_00062028-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1169bp
VNTKIKKSLLVVPLQKHSNIEEARRRDSLSKIKVDMASQDLKHLSSSEFV
AGKPPDEQNKHLQDFVSPHIDSFNYVLDNGLKTAVQLIPPQHFELPDGRR
AEIRFLNADIGHPMVDEKDVTSKTTRIYPAECRERHCTYGANLTATVQWK
IGDQVQGHTSRVLGKVPMMVKSSHCSLHGLTPKELIRQHEEAQEMGGYFI
INGIERIIRMLIMPRRNYPLAMVRNSWKQRGPLFTEFGVSIRSVQKDQTG
NTSVLHYLNDGTCTFSFIHGKEQFFIPLAIVLKALTPNTDQYVYTNLVKG
QEENVFFKDAVANMLRVLQNEGLLTRKEVLKYIGERFRIKFSLAEWVTDE
EVAIYLFNNCILPHLDNNQDKFNLLVFMTQKLFDLANEKCAVETPDNPMN
QEVLLGGHVFQTVLKDKLETWLTSLRYGLLRGMKKMGNEFELNQATLLSW
MQKTINVSNAVEHFFSTGNISSKSSLGLMQNTGLTVVADKLNIMRFLSHF
RCIHRGAFFAQMRTTGVRKLLPEAWGFMCPVHTPDGSPCGLLNHLAALCK
VENEIRPTATLRKMLLTLGVYPENQASKLPNLSDCYTVLLDGDVVGRIHR
NRAEDLAAQLRYFKASGKEGIPSTMEICLIQKTKYAGQYPGLFLFTEPAR
MIRPVTNLRTKTVEYIGSFEQVYMDIAVCKKEIIKNVTTHLELGPSSMLS
ALANLTPYSDFNQSPRNMYQCQMGKQTMGTPCQALKHRSDNKMYRIQTPQ
APIVRNERYNDYGVDEFPLGTNAVVAVISYTGYDMEDAMIINKGSLDRGF
SHGQIYKTEVINLVEKKGRTSTTRFGADPKSGPVINGKIDLDGLPLIGRY
MQQDEPYYSYYNTANQQYTVKKYKSMEPAYIEDVKILGNNLGDGKMDRVS
IKLRIRRNPIIGDKFASRHGQKGILSQKWPVHDMPFTESGMVPDILFNPH
GFPSRMTIGMMIESMAGKSAALHGITHDSTPFKFSEDDPAADYMGDMLLK
AGYNYYGNETLYSGINGQEMGVSIFVGIVYYQRLRHMVSDKFQVRTTGPI
DVLTHQPVKGRKRHGGIRFGEMERDALIAHGSGFLLHDRLFNCSDKSETH
VCTKCGSLISPTFVKIPEELAKISCDKNQWICKTCENGDHITKMVVPYVF
RYLLAELTAMNIRVTLDVK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038877XLOC_038877Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062028TCONS_00062028Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009674Rpa2_dom_4
IPR007644RNA_pol_bsu_protrusion
IPR007642RNA_pol_Rpb2_2
IPR007645RNA_pol_Rpb2_3
IPR007120DNA-dir_RNA_pol_su2_6
IPR007641RNA_pol_Rpb2_7
IPR007121RNA_pol_bsu_CS
IPR015712DNA-dir_RNA_pol_su2
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003899DNA-directed 5'-3' RNA polymerase activity
GO:0003677DNA binding
GO:0032549ribonucleoside binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009674DNA-directed RNA polymerase I subunit RPA2, domain 4PFAMPF06883RNA_pol_Rpa2_4coord: 595..653
e-value: 1.6E-21
score: 75.9
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 66..436
e-value: 5.1E-38
score: 130.5
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 216..403
e-value: 7.5E-15
score: 55.0
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 487..551
e-value: 1.1E-28
score: 99.1
NoneNo IPR availableGENE3D3.90.1800.10coord: 1066..1161
e-value: 3.9E-34
score: 116.3
NoneNo IPR availableGENE3D3.90.1100.10coord: 248..740
e-value: 2.2E-50
score: 170.9
coord: 57..247
e-value: 2.2E-22
score: 78.9
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 59..1168
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6GENE3D2.40.270.10coord: 998..1041
e-value: 7.7E-10
score: 38.3
coord: 762..997
e-value: 1.4E-44
score: 151.8
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6PFAMPF00562RNA_pol_Rpb2_6coord: 702..1063
e-value: 6.3E-115
score: 384.3
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 1065..1167
e-value: 2.2E-23
score: 82.4
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 912..924
IPR015712DNA-directed RNA polymerase, subunit 2CDDcd00653RNA_pol_B_RPB2coord: 65..1167
e-value: 0.0
score: 1001.7

Blast
[Close]
BLAST of TCONS_00062028-protein vs. Swiss-Prot (Human)
Match: RPA2 (DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B PE=1 SV=2)

HSP 1 Score: 1246.11 bits (3223), Expect = 0.000e+0
Identity = 603/1129 (53.41%), Postives = 783/1129 (69.35%), Query Frame = 0 
Query:   41 LKHLSSSEFVAGKPPDEQNKHLQDFVSPHIDSFNYVLDNGLKTAVQLIPPQHFELPDGRRAEIRFLNADIGHPMVDEKDVTSKTTRIYPAECRERHCTYGANLTATVQWKIGDQVQGHTSRVLGKVPMMVKSSHCSLHGLTPKELIRQHEEAQEMGGYFIINGIERIIRMLIMPRRNYPLAMVRNSWKQRGPLFTEFGVSIRSVQKDQTGNTSVLHYLNDGTCTFSFIHGKEQFFIPLAIVLKALTPNTDQYVYTNLVKGQEENVFFKDAVANMLRVLQNEGLLTRKEVLKYIGERFRIKFSLAEWVTDEEVAIYLFNNCILPHLDNNQDKFNLLVFMTQKLFDLANEKCAVETPDNPMNQEVLLGGHVFQTVLKDKLETWLTSLRYGLLRGMKKMGNEFELNQATLLSWMQKTINVSNAVEHFFSTGNISSKSSLGLMQNTGLTVVADKLNIMRFLSHFRCIHRGAFFAQMRTTGVRKLLPEAWGFMCPVHTPDGSPCGLLNHLAALCKVENEIRPTATLRKMLLTLGVYPENQASKLPNLSDCYTVLLDGDVVGRIHRNRAEDLAAQLRYFKASGKEGIPSTMEICLIQKTKYAGQYPGLFLFTEPARMIRPVTNLRTKTVEYIGSFEQVYMDIAVCKKEIIKNVTTHLELGPSSMLSALANLTPYSDFNQSPRNMYQCQMGKQTMGTPCQALKHRSDNKMYRIQTPQAPIVRNERYNDYGVDEFPLGTNAVVAVISYTGYDMEDAMIINKGSLDRGFSHGQIYKTEVINLVEK-KGRTSTTRFGADPKSGPVINGKIDLDGLPLIGRYMQQDEPYYSYYNTANQQYTVKKYKSMEPAYIEDVKILGNNLGDGKMDRVSIKLRIRRNPIIGDKFASRHGQKGILSQKWPVHDMPFTESGMVPDILFNPHGFPSRMTIGMMIESMAGKSAALHGITHDSTPFKFSEDDPAADYMGDMLLKAGYNYYGNETLYSGINGQEMGVSIFVGIVYYQRLRHMVSDKFQVRTTGPIDVLTHQPVKGRKRHGGIRFGEMERDALIAHGSGFLLHDRLFNCSDKSETHVCTKCGSLISPTFVKIPEELAKISCDKNQWICKTCENGDHITKMVVPYVFRYLLAELTAMNIRVTLDV 1168
            LKHL+   +  G P ++Q   LQ+    H++SFNY +  GL  AVQ IPP  F   D  R     L+A I  P V  K    K   +YPAECR R  TY   LTA + W +    +G   + LG VP+MVKS  C+L  L P+ LI  HEEA+EMGGYFIINGIE++IRMLIMPRRN+P+AM+R  WK RGP +T++GVS+  V+++ +     LHYL +GT   +FI+ KE FF+PL   LKAL   +D  ++  L+KG+E++ F +++V+ MLR++  EG  T+K+VL Y+GE FR+K ++ +W  +E+ A +LFN CI  HL +N +KF +L  MT+KLF LA  +C  + PD+ +NQEVL  G +F   LK+KLE WL S++    +  +K      +N   L+      I+++   E+ F+TGN+ SK+ LGL+Q++GL VVADKLN +R+LSHFRC+HRGA FA+MRTT VR+LLPE+WGF+CPVHTPDG PCGL+NHL A+C+V  +   TA++  +L  LGV P + A    + S+CY VLLDG +VG + ++ A  +A  LR+FK   ++ IP  ME+ LI  T     YPGLFLFT P R++RPV NL     E IG+ EQ++M++A+ + E+   VTTH EL P S+LS +AN  P+SD NQSPRNMYQCQMGKQTMG P    + RSDNK+YR+QTPQ+P+VR   Y+ Y +D +P+GTNA+VAVISYTGYDMEDAMI+NK S +RGF+HG +YK+E I+L EK K   S+  FG  P   P +  K+D DGLP IG  +Q  +PYYSY N    +  V  YKS E   ++++K+  N+ G GK   V I +R+ RNP IGDKFASRHGQKGILS+ WP  DMPFTESGMVPDILFNPHGFPSRMTIGM+IESMAGKSAALHG+ HD+TPF FSE++ A +Y G+ML  AGYN+YG E LYSGI+G E+   IF+G+VYYQRLRHMVSDKFQVRTTG  D +T+QP+ GR   GGIRFGEMERDAL+AHG+ FLLHDRLFNCSD+S  HVC KCGSL+SP   K P   + +     ++ C  C   D I  + VPYVFRY +AEL AMNI+V LDV
Sbjct:   16 LKHLTDPSY--GIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKD-ERISFTILDAVISPPTV-PKGTICKEANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQK--TSVSMNTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTPIDGAPHR-SYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKP-GDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSAMR--NRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
The following BLAST results are available for this feature:
BLAST of TCONS_00062028-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPA20.000e+053.41DNA-directed RNA polymerase I subunit RPA2 OS=Homo... [more]
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