TCONS_00060849-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060849-protein
Unique NameTCONS_00060849-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060849-protein ID=TCONS_00060849-protein|Name=TCONS_00060849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MPRSFLIKRIEEKMVTGYFPWQDETLMEGCCLKYEMEDGMDRATFDGKRD
SHTGSDSGITSTSSPFEIQILTPFCSGMSPSTMLVSSCCDKDHGDIGSLS
PASSCHHEGSSPFFSRSSSSQDGLGSISPESNHDRDLPRSFLSTHSYNHM
VACSLSPASSYHHEDEMIPSPSGPQQQKINENHVELLSSTKRYGSLLPPS
RLSYLPPWQVTSSDEIKKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCN
QCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGI
RPYSCGVCGKAFYRKVDVRRHASVHRGY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038213XLOC_038213Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060849TCONS_00060849Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 247..269
e-value: 0.0014
score: 27.9
coord: 219..241
e-value: 0.17
score: 21.0
coord: 303..325
e-value: 0.02
score: 24.1
coord: 275..297
e-value: 1.9E-4
score: 30.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 249..269
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 305..325
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 221..241
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 277..297
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 303..328
score: 12.383
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 247..274
score: 14.877
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 275..302
score: 16.186
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 219..246
score: 11.344
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 217..269
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 255..312
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 303..325
e-value: 4.5E-4
score: 20.4
coord: 275..297
e-value: 3.2E-6
score: 27.2
NoneNo IPR availableGENE3D3.30.160.60coord: 267..288
e-value: 1.0E-19
score: 69.8
NoneNo IPR availableGENE3D3.30.60.60coord: 158..225
e-value: 0.07
score: 12.5
NoneNo IPR availableGENE3D3.30.160.60coord: 253..266
e-value: 1.2E-10
score: 40.7
NoneNo IPR availableGENE3D2.20.25.10coord: 239..252
e-value: 4.5E-6
score: 26.1
NoneNo IPR availablePFAMPF13894zf-C2H2_4coord: 247..269
e-value: 5.6E-4
score: 20.4
NoneNo IPR availableGENE3D3.30.160.60coord: 289..328
e-value: 1.9E-20
score: 72.5
NoneNo IPR availableGENE3D3.30.160.60coord: 226..238
e-value: 0.005
score: 16.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..140

Blast
[Close]
BLAST of TCONS_00060849-protein vs. Swiss-Prot (Human)
Match: GFI1 (Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 8.297e-35
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 0 
Query:  221 CEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRHASVHRG 327
            C+ C K F+RSS+LS H LIH +++ Y C  C   F +KSD+ KH   H+G KP++C VCGK FSQSSN++TH R+HTG +P+ C +CGK F RKVD+RRH     G
Sbjct:  314 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQHG 420

HSP 2 Score: 79.337 bits (194), Expect = 1.743e-16
Identity = 38/110 (34.55%), Postives = 57/110 (51.82%), Query Frame = 0 
Query:  219 HQCEYCLKWFQRSSSLSNH-RLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRHASVHRG 327
            ++C  C K F     L  H R  H  ++ + C  C  +F     L +H   HS  + + C +CGK F +SS + TH   H+  RPY C  CGK F++K D+++H  +H G
Sbjct:  255 YKCIKCSKVFSTPHGLEVHVRRSHSGTRPFACEMCGKTFGHAVSLEQHKAVHSQERSFDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTG 364
The following BLAST results are available for this feature:
BLAST of TCONS_00060849-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI18.297e-3553.27Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 ... [more]
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