TCONS_00060849 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060849
Unique NameTCONS_00060849
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060849 ID=TCONS_00060849|Name=TCONS_00060849|organism=Clytia hemisphaerica|type=transcript|length=1571bp
GTTCGCTATTAGACCTTGATCAACTCAAAGTGTATTAATTACCAGATACT
ACAAAGTTTGTCAAATATATCTTGATCAAAATTGTAAAGGCTGTCGAATA
AAGCCAAGCAAATAACAAATTTGATCGAAATTTACCAAGAGAGAGAAAGG
GAGTTGTTGAATGACTGTTTGTCACAGCTTTGGGAAGGGTCATTGCTAAA
TTTAGAAGATAACTGGAAGGACTAGAACACTAGAACAATCTCAGGCtcaa
atttcaaagattttacaaCAATGCCGCGTTCTTTTTTGATTAAGCGAATC
GAGGAGAAAATGGTTACTGGGTATTTCCCTTGGCAGGATGAGACGCTGAT
GGAAGGATGTTGCTTGAAATATGAAATGGAAGATGGAATGGACCGCGCGA
CATTTGATGGAAAAAGAGATTCACATACAGGATCAGACAGCGGTATAACC
TCAACATCGTCACCTTTTGAGATTCAAATCCTGACACCCTTTTGTTCAGG
AATGTCCCCTTCAACAATGTTGGTATCATCGTGCTGTGATAAAGACCATG
GTGACATTGGTTCCCTCTCACCTGCATCTAGCTGCCACCATGAGGGATCA
AGCCCGTTCTTCTCTCGGTCTAGCTCCAGTCAGGATGGATTAGGCTCGAT
CTCACCTGAATCTAACCATGACAGAGATTTACCGAGATCTTTCCTATCCA
CACATAGCTACAACCATATGGTAGCATGCTCGCTCTCACCTGCTTCAAGC
TACCACCACGAGGATGAAATGATACCATCCCCTTCCGGGccacaacaaca
aaaaatcaaCGAAAATCATGTGGAACTATTATCCTCAACGAAAAGGTACG
GTAGCCTCCTTCCTCCTTCAAGATTGAGCTACCTACCACCTTGGCAAGTG
ACCTCCTCAGATGAGATAAAAAAGCACCAATGTGAATACTGTCTTAAATG
GTTCCAAAGATCAAGTAGTTTATCAAATCACCGATTAATCCATAAGAACT
CCAAATCATACAAGTGCAACCAATGCAATATGAGCTTTCTTCGTAAGTCT
GACCTTGGTAAACACATGGTCACACATTCCGGATCAAAACCGTATCAGTG
TAACGTTTGTGGTAAACGCTTTTCACAATCTTCGAATATGCTGACTCATC
AAAGACGCCATACCGGGATCCGTCCGTATTCTTGTGGTGTATGCGGGAAA
GCTTTTTATCGGAAAGTCGATGTAAGGAGACATGCTTCAGTTCATAGGGG
TTATTGAAAAAAGTCATTTAACAATATCCACAAATATTCCACAGACCTTT
TTCTATATTTATAAATGTTTTGAGTGGGGTACCCAGTTGGTGTGAGTTTA
TAAAGATTCCCGTTTATTTATGCCGGCAGTATATTTTTCTAGGACTTCTT
TTCACAGGACTCGAATTTTAGGGGGTGAATTAATTCTGAATGTTAGGGGA
GTAGTGGTATGAAAACCAACATATTAAATccttgtctcacagccctggtg
aaACTTTATCCCACAGTTGAGATAAAAATTCCATTGTTCCCAGCTGAAAA
AATCTCGCGgtaatggttttg
Run BLAST on NCBI

protein sequence of TCONS_00060849-protein

>TCONS_00060849-protein ID=TCONS_00060849-protein|Name=TCONS_00060849-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MPRSFLIKRIEEKMVTGYFPWQDETLMEGCCLKYEMEDGMDRATFDGKRD
SHTGSDSGITSTSSPFEIQILTPFCSGMSPSTMLVSSCCDKDHGDIGSLS
PASSCHHEGSSPFFSRSSSSQDGLGSISPESNHDRDLPRSFLSTHSYNHM
VACSLSPASSYHHEDEMIPSPSGPQQQKINENHVELLSSTKRYGSLLPPS
RLSYLPPWQVTSSDEIKKHQCEYCLKWFQRSSSLSNHRLIHKNSKSYKCN
QCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGI
RPYSCGVCGKAFYRKVDVRRHASVHRGY
Run BLAST on NCBI

transcript from alignment at scaffold_349:386537..394012-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060849 ID=TCONS_00060849|Name=TCONS_00060849|organism=Clytia hemisphaerica|type=transcript|length=7476bp|location=Sequence derived from alignment at scaffold_349:386537..394012- (Clytia hemisphaerica)
GTTCGCTATTAGACCTTGATCAACTCAAAGTGTATTAATTACCAGATACT
ACAAAGTTTGTCAAATATATCTTGATCAAAATTGTAAAGGCTGTCGAATA
AAGCCAAGCAAATAACAAATTTGATCGAAATTTACCAAGAGAGAGAAAGG
GAGTTGTTGAATGACTGTTTGTCACAGCTTTGGGAAGGGTCATTGCTAAA
TTTAGAAGATAACTGGAAGGACTAGAACACTAGAACAATCTCAGGCTCAA
ATTTCAAAGATTTTACAACAATGCCGCGTTCTTTTTTGATTAAGCGAATC
GAGGAGAAAATGGTTACTGGGTATTTCCCTTGGCAGGATGAGACGCTGAT
GGAAGGATGTTGCTTGAAATATGAAATGGAAGATGGAATGGACCGCGCGA
CATTTGATGGAAAAAGAGATTCACATACAGGTAATTTGAAACATTTTTTC
TTTGCATGAGTGTGTCTTGAGTTTACCATCAGCCTATTTCATAGAATTCG
TACATCTGTTACATTTCATTTTCTATTCAATTTAAAAGGTGAAAATGCAC
AAATCTGGTGCTCTCACTGGTAGCCGGCTATGAGTTTTAAATTCAATTGT
TTATACAGTATATTAGAATTCGAACGGGAAGTTTCATTTTTTCGAATCAC
AGAGAAATTCAAATTTATAGGGGGTAGTTTAAGTGGGTTCCTCCTTCACG
GGGACTGAGAGCTAGTTTGAAGGGGTTACAGCAACAAGAAGAACTACAGG
TTTTTTGTATAAGAATGTCCAAAATCTTTTAAGCCTTCGGATCATGGATG
TTCTTAACCTTTGAGTTTTAGGCCAAAACTGTTCTTAAAATAGTTTTGTG
TAATTTACAAAGAAACCGGGTGTTTTAGAGTCCTTAAAGACTTAAAATGT
TCTTAACTTGCTCTTAACATTTTGGCTACCGAAGTCTTATGTTCTTATAC
AGTTTGTTCTTATATAAAACGTGCTAGTGTGGATTTTGAATTCCTACAAT
CGACAAACTTATAAACAATATAATGACAAATCAAAAATTACCAGAATTCC
ACAAAAAGAAATTAAAAAACCTATGCCAACCCATTGAACAGTTATAATTG
TTGTATTGTCAAACTTGGAATAAACAACACGCATTGGCTTGCTTTCAAAG
ACTTTTCATTTTCGTTTCGCTCCCTCGTTTACGTTTAAAATGACGTCAAA
AGGCATGAAGCCAATTACGTTAACGACTTTTTTGTTTACAAGTTTCTTCG
AAATTAGCATTCAACTATCATTAGAATTGTTTTCAAATAAGAATAGAAAA
CTCGTTAAAATGGTAGTCCATATCGTTAATTCCAAATGGTATGCCTATCC
AATCCTTTGGGACGAAATGGAGTTTTTACAAGTTCTTATTTGATTTGGTT
GGTCGTTAACCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAACGCG
TCATCTCTATCACTTCAAATGACCAATTAGTGAAGTATCTTGTAAAAACT
CCAGCTCATCCCGAGAGTCATGTGATACACTTTTCGACCAATGAGATCAA
TTTTTCGATGGGAAAACAAACTACTTTAAGTTAAACCAAAGTGCTCTGTT
TTCATCTAGTTCTGAGGCCATTTTAATTATTTTAAATTGATAAATAAAGT
CGTTAAAATTGTGATCCACCTATCTACCCTTCGCACTGAACGTCATGCGA
TAGCATACACTTATTTTCAACTTGGTTTCGGAGTGCATTTGTTTCCATTG
AATTTTAAGTATGAATGATAACAAAAAGTCAATTTTCCACCAGGATGAAT
TTGTACGGATTTTTCCACCAGGGAGACTAAATCTAAACCAAATATTCCAG
TAGAGTTAGGGTCCCAACGGGTCTGTGTCACATGAATATAAGAAAACACA
AACATAATACTGGACGAAGAGATTTAAACAACATATATCAAAATCCAAAA
AGTAGAGCAAATAAATGCGTTACAAGTTTTGATTTTCTTATAAAAAAAAA
ACAAAAAGCAATTAAAACATTCTCTTGCATTCCGTGCCAGACGCGACCAG
GGCGGGGCGTTCGAAACCACGAAGACGCCGCATGGTCAATCAAAAAGAGT
AATTTGTTACTCTTTTATGAGAGAGATTTTATAACCACTTTTGGATTTCA
TTCTAAAAATGTCCTTAAATGTTTTTGTCTTCGGCATTTTTGGTGTAATT
TCATGAGGAATTGCATGTCTTAGAGCTTTTGAATTTCATAAAACCGTCGG
CTTGCGCTTAAGACTTATATTCTTATATGGAAAAGAGACAATCGTTAAAC
GATTTTGCTTCGACTAATGATAGCCTTTGTATGCTCCGCCCTACCTTGTA
AAGATGGTTTCGAAGCTAAACTGGTCTCAACTTTTTGTTTACAGACTGTT
TCTATGGTGATGAGACATACAAAAAATTGAAAAAAGTATGTTTGGGAAAA
GTCATTCAGCTCCAAGCCGAAGGCTATAGAAGAATCTTCTTACCTCCCTC
AAAAAAGAAAAAGTGAAAGCCTTGGAATTTGCGTTTTATTTCGGATGGTG
GATTGAATCTAGCACCTTCATTGATTTCTGGCCTTAAATTTTTAATCTTC
TACCGGAATATGTAACTTTCAATCTTGTATCTGGATGAGAACCACGCGCG
CCGCGCAACCAATGTAGAAAATAAAAGGTTCCAAATCCTACATAGCAGTT
TCGTCTTTAGCATTTGGCGATACCCTATTCATGATATGCACCATTGCAAT
GTCTTCCGTTCCACCCAATAGCTGATTGGTTGAAAGTGACGTAATGTCAG
AAGACATTGTAGTGGTGCATATCATGAATTGGGAAAACTCGAATACGTTT
CAATTAATTAACTGTAATATAATACAGGGTGTCCCGAAAAAAAGTATCGA
GCTCGAACACGATTCTGAGTAGAAGGTTATCGCGTGTGTTTAACAAAATG
TAAGAAAATATATACCAACACAATTATTGTTTTTACAACAATCGTTTTGA
TTAAAAATAATTAACTCTCTTTACAATTTTCAGAACGTTAAAGTTATTGA
GAATTGTTTTTTGTAAAACTTATTCATAAAAGATGTCTCATGACAATTAA
TATGACACAGAGAGAAACTTTGATAAACATTGCAAATTTCATAGTGAAAC
ACACACAAAAACTTTCTTTCTATAGAAGTGTTAAGACTCGATATTTTTTT
TCGGCACACCCTGCACACATGAATTAAACAAACTAAAGAACTCTTTTTGA
AAATTAAAAGTTTCAAAAGACACTCTTTTAGCCGCCTCAATTTATAAAAC
TCTCGGCTTAGGATGAGGATGAGGATTTAGCACAACAAATACCAAAACTA
TTTGTTTTGAAATTAATAACAATATAGGCAAACATCTTTCTACTAGAAAA
TCTTTACCGATCACGGAAATGTAAACTCTTACATAGTACACATATTGTAT
TTCTACCATTATGGAAATATACGCGTTCGAATCTGTAGAAGTGATTCCTG
ACGTAAATCGAAAAAACAACCATTTAAATGCCCAGGCAACAATATTTCCA
TGTGTTTAATATAGGGAAAATATTTACCGGTAACGGAAATGTAACTGTCT
TACAAAGATTGTTTCTAAATACGGAAGCTTTAATTGATTTTTCCACATGA
AATTACATAGACAAACCACATTTGATTGTAATATATATTGCATCTTTGTA
GCATTTACATAATCCATTCTAAAATCAACTTTCTCTTTTCCCTTCTCAGG
ATCAGATAGCGGTATAACCTCAACATCGTCACCTTTTGAGATTCAAATCC
TGACACCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTAAAATATAAGAACGTTCTCCATCACATAGGCTCATTACAAAAG
GTAGTTACAACGTATAAATTAATCAATAGCCCTTTTACTATTCCCCTGTT
GCATAAATGCACGTCTTTAAAAATCAAAATTAATAAAAATTCAAATTCCC
TCGTTTTACTTTTTTATTGTTCCATACNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
GGGAGAGCTTAAAATACAATTTTGTGAATACACACTTAAAACTTTCTACT
CAATCGCATGTTCAAACTCGATACTTTTATTAGGGACACCCTGTAGTGAA
ACACACACAAAAACTTTCTTTCTATAGAAGTGTTAAGACTCGATATTTTT
TTTCGGCACACCCTGCAAACATGAATTAAACAAACTAAAGAACTCTTTTT
GAAAATTAAAAGTTTCAAAAGACACTCTTTTAGCCGCCTCAATTTATAAA
ACTCTCGGCTTAGGATGAGGATGAGGATTTAGCACAACAAATACCAAAAC
TATTTGTTTTGAAATTAATAACAATATAGGCAAACATCTTTCTACTAGAA
AATCTTTACCGATCACGGAAATGTAAACTCTTACATAGTACACATATTGT
ATTTCTACCATTATGGAAATATACGCGTTCGAATCTGTAGAAGTGATTCC
TGACGTAAATCGAAAAAACAACCATTTAAATGCCCAGGCAACAATATTTC
CATGTGTTTAATATAGGGAAAATATTTACCGGTAACGGAAATGTAACTGT
CTTACAAAGATTGTTTCTAAATACGGAAGCTTTAATTGATTTTTCCACAT
GAAATTACATNAGGTTCCAAATCCTACATAGCAGTCTCGTCTTTAGCATT
TGGCGATACCCTATTCATGATATGCACCATTGCAATGTCTTCCGTTCCAC
CCAATAGCTGATTGGTTGAAAGTGACGTAATGTCAGAAGACATTGTAGTG
GTGCATATCATGAATTGGGAAAACTCGAATACGTTTCAATTAATTAACTG
TAATATAATACAGGGTGTCCCGAAAAAAAGTATCGAGCTCGAACACGATT
CTGAGTAGAAGGTTATCGCGTGTGTTTAACAAAATGTAAGAAAATATATA
CCAACACAATTATTGTTTTTACAACAATCGTTTTGATTAAAAATAATTAA
CTCTCTTTACAATTTTCAGAACGTTAAAGTTATTGAGAATTGTTTTTTGT
AAAACTTATTCATAAAAGATGTCTCATGACAATTAATATGACACAGAGAG
AAACTTTGATAAACATTGCAAATTTCATAGTGAAACACACACAAAAACTT
TCTTTCTATAGAAGTGTTAAGACTCGATATTTTTTTTCGGCACACCCTGC
ACACATGAATTAAACAAACTAAAGAACTCTTTTTGAAAATTAAAAGTTTC
AAAAGACACTCTTTTAGCCGCCTCAATTTATAAAACTCTCGGCTTAGGAT
GAGGATGAGGATTTAGCACAACAAATACCAAAACTATTTGTTTTGAAATT
AATAACAATATAGGCAAACATCTTTCTACTAGAAAATCTTTACCGATCAC
GGAAATGTAAACTCTTACATAGTACACATATTGTATTTCTACCATTATGG
AAATATACGCGTTCGAATCTGTAGAAGTGATTCCTGACGTAAATCGAAAA
AACAACCATTTAAATGCCCAGGCAACAATATTTCCATGTGTTTAATATAG
GGAAAATATTTACCGGTAACGGAAATGTAACTGTCTTACAAAGATTGTTT
CTAAATACGGAAGCCTTAATTGATTTTTCCACATGAAATTACATAGACAA
ACCACATTTGATTGTAATGTATATTGCATCTTTGTAGCATTTACATAATC
CATTCTAAAATCAACTTTCTCTTTTCCCTTCTCAGGATCAGACAGCGGTA
TAACCTCAACATCGTCACCTTTTGAGATTCAAATCCTGACACCCTTTTGT
TCAGGAATGTCCCCTTCAACAATGTTGGTATCATCGTGCTGTGATAAAGA
CCATGGTGACATTGGTTCCCTCTCACCTGCATCTAGCTGCCACCATGAGG
GATCAAGCCCGTTCTTCTCTCGGTCTAGCTCCAGTCAGGATGGATTAGGC
TCGATCTCACCTGAATCTAACCATGACAGAGATTTACCGAGATCTTTCCT
ATCCACACATAGCTACAACCATATGGTAGCATGCTCGCTCTCACCTGCTT
CAAGCTACCACCACGAGGATGAAATGATACCATCCCCTTCCGGGCCACAA
CAACAAAAAATCAACGAAAATCATGTGGAACTATTATCCTCAACGAAAAG
GTACGGTAGCCTCCTTCCTCCTTCAAGATTGAGCTACCTACCACCTTGGC
AAGTGACCTCCTCAGATGAGATAAAAAAGCACCAATGTGAATACTGTCTT
AAATGGTTCCAAAGATCAAGTAGTTTATCAAATCACCGATTAATCCATAA
GAACTCCAAATCATACAAGTGCAACCAATGCAATATGAGCTTTCTTCGTA
AGTCTGACCTTGGTAAACACATGGTCACACATTCCGGATCAAAACCGTAT
CAGTGTAACGTTTGTGGTAAACGCTTTTCACAATCTTCGAATATGCTGAC
TCATCAAAGACGCCATACCGGGATCCGTCCGTATTCTTGTGGTGTATGCG
GGAAAGCTTTTTATCGGAAAGTCGATGTAAGGAGACATGCTTCAGTTCAT
AGGGGTTATTGAAAAAAGTCATTTAACAATATCCACAAATATTCCACAGA
CCTTTTTCTATATTTATAAATGTTTTGAGTGGGGTACCCAGTTGGTGTGA
GTTTATAAAGATTCCCGTTTATTTATGCCGGCAGTATATTTTTCTAGGAC
TTCTTTTCACAGGACTCGAATTTTAGGGGGTGAATTAATTCTGAATGTTA
GGGGAGTAGTGGTATGAAAACCAACATATTAAATCCTTGTCTCACAGCCC
TGGTGAAACTTTATCCCACAGTTGAGATAAAAATTCCATTGTTCCCAGCT
GAAAAAATCTCGCGGTAATGGTTTTG

Coding sequence (CDS) from alignment at scaffold_349:386537..394012-

>TCONS_00060849 ID=TCONS_00060849|Name=TCONS_00060849|organism=Clytia hemisphaerica|type=CDS|length=1974bp|location=Sequence derived from alignment at scaffold_349:386537..394012- (Clytia hemisphaerica)
GATCAGACAGCGGTATAACCTCAACATCGTCACCTTTTGAGATTCAAATC
CTGACACCCTTTTGTTCAGGAATGTCCCCTTCAACAATGTTGGTATCATC
GTGCTGTGATAAAGACCATGGTGACATTGGTTCCCTCTCACCTGCATCTA
GCTGCCACCATGAGGGATCAAGCCCGTTCTTCTCTCGGTCTAGCTCCAGT
CAGGATGGATTAGGCTCGATCTCACCTGAATCTAACCATGACAGAGATTT
ACCGAGATCTTTCCTATCCACACATAGCTACAACCATATGGTAGCATGCT
CGCTCTCACCTGCTTCAAGCTACCACCACGAGGATGAAATGATACCATCC
CCTTCCGGGCCACAACAACAAAAAATCAACGAAAATCATGTGGAACTATT
ATCCTCAACGAAAAGGTACGGTAGCCTCCTTCCTCCTTCAAGATTGAGCT
ACCTACCACCTTGGCAAGTGACCTCCTCAGATGAGATAAAAAAGCACCAA
TGTGAATACTGTCTTAAATGGTTCCAAAGATCAAGTAGTTTATCAAATCA
CCGATTAATCCATAAGAACTCCAAATCATACAAGTGCAACCAATGCAATA
TGAGCTTTCTTCGTAAGTCTGACCTTGGTAAACACATGGTCACACATTCC
GGATCAAAACCGTATCAGTGTAACGTTTGTGGTAAACGCTTTTCACAATC
TTCGAATATGCTGACTCATCAAAGACGCCATACCGGGATCCGTCCGTATT
CTTGTGGTGTATGCGGGAAAGCTTTTTATCGGAAAGTCGATGTAAGGAGA
CATGCTTCAGTTCATAGGGGTTATTGAATGCCGCGTTCTTTTTTGATTAA
GCGAATCGAGGAGAAAATGGTTACTGGGTATTTCCCTTGGCAGGATGAGA
CGCTGATGGAAGGATGTTGCTTGAAATATGAAATGGAAGATGGAATGGAC
CGCGCGACATTTGATGGAAAAAGAGATTCACATACAGGATCAGACAGCGG
TATAACCTCAACATCGTCACCTTTTGAGATTCAAATCCTGACACCCTTTT
GTTCAGGAATGTCCCCTTCAACAATGTTGGTATCATCGTGCTGTGATAAA
GACCATGGTGACATTGGTTCCCTCTCACCTGCATCTAGCTGCCACCATGA
GGGATCAAGCCCGTTCTTCTCTCGGTCTAGCTCCAGTCAGGATGGATTAG
GCTCGATCTCACCTGAATCTAACCATGACAGAGATTTACCGAGATCTTTC
CTATCCACACATAGCTACAACCATATGGTAGCATGCTCGCTCTCACCTGC
TTCAAGCTACCACCACGAGGATGAAATGATACCATCCCCTTCCGGGCCAC
AACAACAAAAAATCAACGAAAATCATGTGGAACTATTATCCTCAACGAAA
AGGTACGGTAGCCTCCTTCCTCCTTCAAGATTGAGCTACCTACCACCTTG
GCAAGTGACCTCCTCAGATGAGATAAAAAAGCACCAATGTGAATACTGTC
TTAAATGGTTCCAAAGATCAAGTAGTTTATCAAATCACCGATTAATCCAT
AAGAACTCCAAATCATACAAGTGCAACCAATGCAATATGAGCTTTCTTCG
TAAGTCTGACCTTGGTAAACACATGGTCACACATTCCGGATCAAAACCGT
ATCAGTGTAACGTTTGTGGTAAACGCTTTTCACAATCTTCGAATATGCTG
ACTCATCAAAGACGCCATACCGGGATCCGTCCGTATTCTTGTGGTGTATG
CGGGAAAGCTTTTTATCGGAAAGTCGATGTAAGGAGACATGCTTCAGTTC
ATAGGGGTTATTGAATGCCGCGTTCTTTTTTGATTAAGCGAATCGAGGAG
AAAATGGTTACTGGGTATTTCCCTTGGCAGGATGAGACGCTGATGGAAGG
ATGTTGCTTGAAATATGAAATGGAAGATGGAATGGACCGCGCGACATTTG
ATGGAAAAAGAGATTCACATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038213XLOC_038213Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060849-proteinTCONS_00060849-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060849-exon-scaffold_349-1575043694:393583..394012TCONS_00060849-exon-scaffold_349-1575043694:393583..394012Clytia hemisphaericaexon
TCONS_00060849-exon-scaffold_349-1575043694:386537..387677TCONS_00060849-exon-scaffold_349-1575043694:386537..387677Clytia hemisphaericaexon
TCONS_00060849-exon-scaffold_349-1510915933:393583..394012TCONS_00060849-exon-scaffold_349-1510915933:393583..394012Clytia hemisphaericaexon
TCONS_00060849-exon-scaffold_349-1510915933:386537..387677TCONS_00060849-exon-scaffold_349-1510915933:386537..387677Clytia hemisphaericaexon
TCONS_00060849-exon-scaffold_349-1491911889:393583..394012TCONS_00060849-exon-scaffold_349-1491911889:393583..394012Clytia hemisphaericaexon
TCONS_00060849-exon-scaffold_349-1491911889:386537..387677TCONS_00060849-exon-scaffold_349-1491911889:386537..387677Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_349supercontigscaffold_349:386537..394012 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0713317	0	0.135945	0	0	6.28103	5.64895	0.700317	0.373163	1.41642	2.51508	0.351579	0.740953	0	0	0	0	0.0559337	0.0700932	0	0	0	0.0294563
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00060849 vs. Swiss-Prot (Human)
Match: GFI1 (Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 7.289e-33
Identity = 57/107 (53.27%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:  931 CEYCLKWFQRSSSLSNHRLIHKNSKSYKCNQCNMSFLRKSDLGKHMVTHSGSKPYQCNVCGKRFSQSSNMLTHQRRHTGIRPYSCGVCGKAFYRKVDVRRHASVHRG 1251
            C+ C K F+RSS+LS H LIH +++ Y C  C   F +KSD+ KH   H+G KP++C VCGK FSQSSN++TH R+HTG +P+ C +CGK F RKVD+RRH     G
Sbjct:  314 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFGCDLCGKGFQRKVDLRRHRETQHG 420
The following BLAST results are available for this feature:
BLAST of TCONS_00060849 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GFI17.289e-3353.27Zinc finger protein Gfi-1 OS=Homo sapiens GN=GFI1 ... [more]
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