TCONS_00060002-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060002-protein
Unique NameTCONS_00060002-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2099

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060002-protein ID=TCONS_00060002-protein|Name=TCONS_00060002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2099bp
MMVNKGVFLLVFHLSLVLWRTSAQQNTLLPYGTENDDVMLTNGDDENVEV
ELQESFMFWDRNIKTFYISFNGGVMSTQYIRIASSDPWWIFPQYSILPFW
EDFIIEPNKGGSVYYNTNVSRNVLDQIENLVKRNSHLGLNGEDEGVGQFE
ADVRRTLLVTFEKVKHISDTNVANSFQVVLTSNQDASESYIVFLYKHLDA
AKVFHPKAGYFINKNNLCKLPGSDELQALSLSCKTNIYQPGVFVVGLTPK
SSMLCSKGGVESSCSHCNYDTTIPEETCSSSQNTRLAVCGTNGVTYENIC
ALKKEICKRNGSLAFSKDGSSCNADICPDSEPCSNLNDTFCNKASISDSC
QRKCDVCFPEDKGCVAKNGGCEDLCIQNATSPLSRTCKCFNSKLNADGET
CETRTAYFSYKNTLATTSGQTRTFPSVTRVLGVDHDADKKNIFWIGVDPT
SGTNLNMAPFDDFEKSQIILKTETHFSDLTFDSTTSDIYLTEELEGKVAV
IRDIYNRTGNGLKKEELMSGLRQPRAIVFEPCERLLFISDYKFPAIIQFN
LTDRSSKRIVTDRLSQPNALALDVNSKKIYWGDSDIDKIERSNYDGTCRE
VVYFTDWNNDDEDDSHIYSMTYNSNNLYWTDLLENPADGKFHINQVDLQT
GVVSSLTVVPDAPRAVGFLKYNKYHCSSKDQSQCSRLSPPSPEPITNEIC
YEYGDLIGQKLPRGDDVIEGEIKLERNISVLKGNIDKMFVNVNGYITLGG
DIEDYELTLPYTEPVLAVSATDYNTEQAGNIYYQVTKSAKVMEKVAKDVN
EFYGTHNSFRPDHVVIVTWENVPSVANPNKRNTFQAVIASDSQQTFAIYC
YQRLQSEPVIGFYDGDKCTVQWKETDPGKIVARKKMVYNLTPNECNKNLT
QKLNGLLPYGEGKGDTKEEIDSISNNITLTLSRQTMFLTQLTNKITITKD
GRIYGPITDDEKYVSVYSSNWVKGNVFYRQSTHPQDFNQIISDLTQYVGH
QNLKSIQFQVIFIITFEEVSTQQNPSQTNTFQFAHISNDEISYGLFKFQK
LLTQSATSGYFDGPCNQAFLPHSTTPKSILLQEESNIQKPGTFTFLLSGS
DCDKKSNNFTIIQQKIYFKSIFGSATIDFTHQESASQKSISINDVISGKE
PILAIIANQNNTSMKFSYLSLHHSENSHNYTFNMLNIPASTPKTPYLDFG
ELPMSSLGSNTKCIKHHHFTSKMSGTPVIKVSLHHKDLGSIDSIHLKDVA
SAWLRNVDQSGFDVCVRKAVSLTGAANFVVSYVAVANTIGDQGFTESKVE
TVNSLPQTNKEEGGNKHCGIFKYKYTYHTQPLVFVTAEDSTADASSSHQH
DASSHLEGTSNYQVHAWVRSVYQDHAVICGRSSSDDSDKIKIHVLITGSF
DACSIHKCPENKECRIDSRTNRPSCQCITSCPEESKDRGLFCASNYKSYA
SSCEMYKDACALYGLDIFENVVKIHDGFCTHLPYYSGSTQLSEVPEMHGA
FCQYIALPSSYFNTFSKVNVILTTHWSEQNMTSSHENEASARWSEDVTRQ
GFRACAMVAGRGASNRAPWVNWVAYQSNELTYSTHHQIEAGDVIMPTWYT
GSRCKSIVLKGLKKSSSEQPRIMVSVEHQQPRAFRNAMTAWIEQHARNNG
STEYRICARELQNFDGVHRDIKVNWLAVYNPYPVHISEIGTVDFMASPTT
PVNGQYSITARCKAIEYNSGYPSTAHPLIIVSPQNTTSPTLFNTGYSNQD
TVAWVEGNNETRMKVCLKSIRSGLQQESYSIAFTVFPRKGLCEKGWYFYE
EKCYSTLNAEPQSFGEASRVCENTGSSLVEIESVQENHFVSSIVAENKNI
WLGYIDVTIEGDWTWLSKTPNNKYTNWNIGKPSGSTEENCALMLGDGRWD
DVSCSVKNLFVCEKDSSELQRACSKYCQNGASCKLLKNDVTGNVNVQCKC
AIGFAGEKCEIDLSQHKECTQYQSLENQRWRLVSNDNNNVTKQPDTACDR
SLVSQTKWYRFIGASGFRLLDGDTCTNTMNQCGVRYPGWIRGIHPTVYEG
VLSMRVHFYSAYCASDQGVVRVRNCGSYFVYNFVKFPYWSCEYGLCTKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037757XLOC_037757Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060002TCONS_00060002Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003886NIDO_dom
IPR001304C-type_lectin-like
IPR002350Kazal_dom
IPR000742EGF-like_dom
IPR000033LDLR_classB_rpt
IPR016186C-type_lectin-like/link
IPR0110426-blade_b-propeller_TolB-like
IPR018378C-type_lectin_CS
IPR013032EGF-like_CS
IPR016187CTDL_fold
Vocabulary: Biological Process
TermDefinition
GO:0007160cell-matrix adhesion
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007160 cell-matrix adhesion
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003886NIDO domainSMARTSM00539ylk_9coord: 765..895
e-value: 3.4E-8
score: 43.2
coord: 98..252
e-value: 2.6E-5
score: 29.7
coord: 966..1102
e-value: 9.4E-4
score: 10.5
IPR003886NIDO domainPFAMPF06119NIDOcoord: 174..244
e-value: 3.3E-6
score: 27.9
IPR003886NIDO domainPROSITEPS51220NIDOcoord: 768..898
score: 13.097
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 1792..1913
e-value: 9.6E-26
score: 101.5
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 1811..1914
e-value: 2.1E-20
score: 73.4
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 1799..1913
score: 23.028
IPR002350Kazal domainSMARTSM00280kazal_3coord: 1426..1479
e-value: 0.94
score: 3.0
coord: 277..321
e-value: 3.1E-7
score: 40.0
IPR002350Kazal domainPFAMPF07648Kazal_2coord: 1426..1464
e-value: 0.001
score: 19.1
coord: 275..320
e-value: 2.5E-6
score: 27.4
IPR002350Kazal domainPROSITEPS51465KAZAL_2coord: 258..321
score: 8.289
IPR002350Kazal domainPROSITEPS51465KAZAL_2coord: 1419..1481
score: 7.66
IPR002350Kazal domainSUPERFAMILY100895Kazal-type serine protease inhibitorscoord: 278..319
IPR002350Kazal domainSUPERFAMILY100895Kazal-type serine protease inhibitorscoord: 1425..1479
IPR000742EGF-like domainSMARTSM00181egf_5coord: 1922..1960
e-value: 5.5E-4
score: 29.2
coord: 1402..1443
e-value: 180.0
score: 1.7
coord: 363..402
e-value: 85.0
score: 5.4
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 1919..1960
score: 11.909
IPR000033LDLR class B repeatSMARTSM00135LY_2coord: 557..599
e-value: 9.6E-11
score: 51.7
NoneNo IPR availableGENE3D3.30.60.30coord: 1453..1481
e-value: 0.021
score: 14.5
NoneNo IPR availableGENE3D3.30.60.30coord: 1402..1452
e-value: 1.6E-6
score: 27.9
NoneNo IPR availableGENE3D2.10.25.10coord: 1926..1965
e-value: 4.1E-5
score: 23.0
NoneNo IPR availableGENE3D3.30.60.30coord: 273..326
e-value: 1.3E-8
score: 34.5
NoneNo IPR availableCDDcd00104KAZAL_FScoord: 278..320
e-value: 1.99461E-5
score: 43.4126
NoneNo IPR availableCDDcd00037CLECTcoord: 1802..1914
e-value: 1.28688E-26
score: 106.935
NoneNo IPR availableSUPERFAMILY63825YWTD domaincoord: 421..661
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 1621..1922
e-value: 1.0E-34
score: 119.3
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 412..671
e-value: 4.1E-13
score: 48.6
IPR018378C-type lectin, conserved sitePROSITEPS00615C_TYPE_LECTIN_1coord: 1890..1912
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 1948..1959
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 1948..1959
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 1789..1916

Blast
[Close]
BLAST of TCONS_00060002-protein vs. Swiss-Prot (Human)
Match: LRP6 (Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.532e-21
Identity = 81/282 (28.72%), Postives = 125/282 (44.33%), Query Frame = 0 
Query:  364 CVAKNGGCEDLCIQNATSPLSRTCKCFNS-KLNADGETCE---TRTAYFSYKNTLATTSGQTRTFPSVT-------RVLGVDHDADKKNIFWIGVDPTSGTNLNMAPFDDFEKSQIILKTE-THFSDLTFDSTTSDIYLTEELEGKVAVIRDIYNRTGNGLKKEELMS-GLRQPRAIVFEPCERLLFISDY-KFPAIIQFNLTDRSSKRIVTDRLSQPNALALDVNSKKIYWGDSDIDKIERSNYDGTCREVVYFTDWNNDDEDDSHIYSMTYNSNNLYWTD 631
            C   NGGC  LC+ +   P  + C C    KL  +G+TC+   T     + +  L   S  T  F  +          + +D+D  +  I+W   D       +   F D   SQ ++  +  H   +  D    ++Y T+    ++ V R       NG  ++ L+S  L +PRAIV +P    ++ +D+ + P I +  L       +V   L  PN LALD +  KIYWGD+  DKIE  N DGT R V+        ++   HI+  T   + +YWTD
Sbjct:  286 CGIDNGGCSHLCLMSPVKPFYQ-CACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTD-DEVRAIRRS---FIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR------LNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV-------EDKIPHIFGFTLLGDYVYWTD 549
The following BLAST results are available for this feature:
BLAST of TCONS_00060002-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRP61.532e-2128.72Low-density lipoprotein receptor-related protein 6... [more]
back to top