TCONS_00059829-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059829-protein
Unique NameTCONS_00059829-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059829-protein ID=TCONS_00059829-protein|Name=TCONS_00059829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=363bp
MNPLTNVRNVKKLNEQDLKNGIFDHTKTWHSQYKDSAYIFIGGLPYDLTE
GDVLCVFSQYGEIVNINMVRDKKTGKIKGYGFICYEDQRSTILAVDNLNG
IKLGGRTIRVDHVSEYRIPKSDEKGEDGKYKDKIETGCAPKTPSPAPSSD
EELSDYKLEKKKKKKEKKKNKKLKKGADRDDEQRYNDKSNGEKKRDDLSP
PYKKYHKDRLRDYSLDKERSKRDKSRSVSPERQHREGHYKDARKNESSSS
YKKYHRDRSRDDSPPISQKKRHASPSPSGKKRHDFRSPSPVRKRRHDSRS
LSPSDRRMRDRNSKRSXVRKGRHDSRSLSPSDRRMRDRNSKRSPSPDKRR
RSRSPVGRDRGRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037632XLOC_037632Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059829TCONS_00059829Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 38..111
e-value: 5.3E-25
score: 99.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 39..109
e-value: 1.3E-20
score: 72.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 37..115
score: 18.99
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 29..114
NoneNo IPR availableGENE3D3.30.70.330coord: 31..196
e-value: 1.4E-27
score: 95.7
NoneNo IPR availableCDDcd12411RRM_ist3_likecoord: 28..116
e-value: 2.54448E-64
score: 200.557

Blast
[Close]
BLAST of TCONS_00059829-protein vs. Swiss-Prot (Human)
Match: RBMX2 (RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 1.171e-64
Identity = 93/142 (65.49%), Postives = 117/142 (82.39%), Query Frame = 0 
Query:    1 MNPLTNVRNVKKLNEQDLKNGIFDHTKTWHSQYKDSAYIFIGGLPYDLTEGDVLCVFSQYGEIVNINMVRDKKTGKIKGYGFICYEDQRSTILAVDNLNGIKLGGRTIRVDHVSEYRIPKSDEKGEDGKYKDKIETGCAPKT 142
            MNPLT V+ + +LNE++++ G+ D   +WHS+YKDSA+IF+GGLPY+LTEGD++CVFSQYGEIVNIN+VRDKKTGK KG+ F+CYEDQRSTILAVDN NGIK+ GRTIRVDHVS YR PK  E+ +D   + + E GC  +T
Sbjct:    1 MNPLTKVKLINELNEREVQLGVADKV-SWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQ-EKGCGART 140
The following BLAST results are available for this feature:
BLAST of TCONS_00059829-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBMX21.171e-6465.49RNA-binding motif protein, X-linked 2 OS=Homo sapi... [more]
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