TCONS_00058466-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058466-protein
Unique NameTCONS_00058466-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058466-protein ID=TCONS_00058466-protein|Name=TCONS_00058466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp
LEKKNRKFCVKLYFLLIFMEKSVATLLTFVSNQSENLLNKKDMVIQTVEH
LSSSNINNRAPKCARCRNHGIVNSLKGHKHFCQWKNCTCARCQVVVERQR
ITASRVASLRQQRKIVGGTESSTSNKTRNEYASSDDERSPRTLINLNNVK
YLGEFQRRRFVDSDDESERSARSTGTPASISPPISPPLSVRSDDIDVRSX
GPPASISPPISPPLSVRSDDIDVRSRSRTTIRKPASFCKDSECNECLKIS
EFMFKTSMSKLRQEFPRFPTREIEIVLQQSKGDFLSAAQCLRNRELAQQR
VVPIYRGFTVSPPSCDCTECKEAIKINRKRHVESPISRPSPGPIQYSPLS
KRRRQVLENALSISKRGASPPSLIKYCADCSSSVPLEDRFCGKCGSNQTI
SQKKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036840XLOC_036840Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058466TCONS_00058466Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001275DM_DNA-bd
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001275DM DNA-binding domainSMARTSM00301DM_3coord: 59..112
e-value: 8.2E-19
score: 78.5
IPR001275DM DNA-binding domainGENE3D4.10.1040.10coord: 58..105
e-value: 5.3E-20
score: 70.6
IPR001275DM DNA-binding domainPFAMPF00751DMcoord: 59..104
e-value: 1.2E-18
score: 66.6
IPR001275DM DNA-binding domainPROSITEPS40000DM_1coord: 63..92
IPR001275DM DNA-binding domainPROSITEPS50809DM_2coord: 63..110
score: 12.634
IPR001275DM DNA-binding domainSUPERFAMILY82927Cysteine-rich DNA binding domain, (DM domain)coord: 57..103

Blast
[Close]
BLAST of TCONS_00058466-protein vs. Swiss-Prot (Human)
Match: DMTA2 (Doublesex- and mab-3-related transcription factor A2 OS=Homo sapiens GN=DMRTA2 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.117e-20
Identity = 34/56 (60.71%), Postives = 47/56 (83.93%), Query Frame = 0 
Query:   59 RAPKCARCRNHGIVNSLKGHKHFCQWKNCTCARCQVVVERQRITASRVASLRQQRK 114
            R PKCARCRNHG+V++LKGHK +C+WK+C CA+C ++ ERQR+ A++VA  RQQ +
Sbjct:   66 RTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQAQ 121
The following BLAST results are available for this feature:
BLAST of TCONS_00058466-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DMTA29.117e-2060.71Doublesex- and mab-3-related transcription factor ... [more]
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